mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 188,837 | C→T | R316C (CGC→TGC) | PP_0165 → | GGDEF domain‑containing protein |
| RA | 233,545 | C→T | G548G (GGC→GGT) | PP_0180 → | cytochrome c family protein |
| RA | 476,133 | A→T | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| RA | 591,535 | T→A | V260D (GTT→GAT) | PP_0501 → | NAD‑dependent epimerase/dehydratase family protein |
| RA | 1,011,323 | +T | intergenic (‑258/+192) | PP_0871 ← / ← SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| RA | 1,164,101 | G→A | A427T (GCC→ACC) | gtsA → | mannose/glucose ABC transporter substrate‑binding protein |
| RA | 1,167,740 | C→T | Q185* (CAG→TAG) | oprB‑I → | carbohydrate‑selective porin |
| RA | 1,505,141 | Δ1 bp | coding (597/1095 nt) | zapE → | nucleoside triphosphate hydrolase domain‑containing protein |
| MC JC | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| RA | 1,652,918 | G→A | Y265Y (TAC→TAT) | oprB‑II ← | carbohydrate‑selective porin |
| RA | 1,856,513 | A→G | D203G (GAT→GGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 2,043,352 | (G)10→11 | coding (1120/1143 nt) | rffE ← | UDP‑N‑acetylglucosamine‑2‑epimerase |
| RA | 2,590,436 | C→G | Q17H (CAG→CAC) | folD‑II ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
| RA | 4,018,201 | G→A | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,746,222 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,224 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,226 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,229 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,232 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,234 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,248 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,250 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,253 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1015841 = | 34 (0.090) | 530 (1.470) | 194/294 | 0.0 | 94.0% | intergenic (‑68/‑700) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | 4541196 = | NA (NA) | intergenic (+730/‑85) | PP_4022/PP_4024 | hypothetical protein/transposase | |||||
| * | ? | NC_002947 | = 1015848 | 36 (0.100) | 566 (1.570) | 192/294 | 0.0 | 94.0% | intergenic (‑75/‑693) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | = 4543236 | NA (NA) | intergenic (+45/‑275) | PP_4025/PP_4027 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | 1444956 = | NA (NA) | 327 (0.940) | 147/284 | 0.3 | 100% | intergenic (‑331/‑328) | yveA/PP_1260 | aspartate‑proton symporter/transposase |
| ? | NC_002947 | = 1849442 | 0 (0.000) | coding (343/2754 nt) | gacS | sensor protein GacS | |||||
| * | ? | NC_002947 | = 1446649 | NA (NA) | 301 (0.850) | 131/288 | 0.7 | 100% | intergenic (+37/+395) | PP_1260/ghrB | transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase |
| ? | NC_002947 | 1849440 = | 0 (0.000) | coding (345/2754 nt) | gacS | sensor protein GacS | |||||
| * | ? | NC_002947 | 2930325 = | 232 (0.650) | 236 (0.680) | 117/286 | 1.2 | 51.1% | intergenic (‑81/+484) | PP_2563/PP_2564 | antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase |
| ? | NC_002947 | = 2930764 | NA (NA) | intergenic (‑520/+45) | PP_2563/PP_2564 | antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase | |||||
| * | ? | NC_002947 | 3976787 = | NA (NA) | 328 (1.040) | 130/258 | 0.4 | 100% | intergenic (+177/‑203) | PP_3501/PP_3502 | transposase/transposase |
| ? | NC_002947 | 4578248 = | 0 (0.000) | intergenic (+63/‑74) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme | |||||
| * | ? | NC_002947 | = 4578249 | 0 (0.000) | 375 (1.100) | 136/280 | 0.5 | 100% | intergenic (+64/‑73) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
| ? | NC_002947 | = 5763126 | NA (NA) | intergenic (+145/+373) | PP_5050/PP_5051 | transposase/hypothetical protein | |||||