Sun Jul 19 06:12:37 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq -p -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/10 -r /var/data/P_putida_KT2440_SBRG_200326_galETKM_new.gb /var/alemutpipe-outputs/good/JBEI_A34_adapted_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JBEI_A34_adapted_R2_001.good.fq.gz