mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 24,716 | G→T | 28.6% | E8* (GAG→TAG) | PP_0020 → | hypothetical protein |
| RA | 188,837 | C→T | 100% | R316C (CGC→TGC) | PP_0165 → | GGDEF domain‑containing protein |
| RA | 195,634 | C→T | 41.8% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 11.0% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 22.7% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 28.3% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 233,545 | C→T | 100% | G548G (GGC→GGT) | PP_0180 → | cytochrome c family protein |
| RA | 303,104 | G→T | 36.4% | R423L (CGG→CTG) | envZ → | osmolarity sensor protein EnvZ |
| RA | 303,121 | G→T | 28.5% | G429W (GGG→TGG) | envZ → | osmolarity sensor protein EnvZ |
| RA | 374,739 | C→A | 8.2% | P9Q (CCA→CAA) | PP_0312 → | electron transfer flavoprotein subunit alpha |
| RA | 476,133 | A→T | 100% | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| RA | 478,113 | G→T | 26.8% | W123L (TGG→TTG) | PP_0393 → | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase |
| RA | 503,164 | G→T | 18.2% | S64S (TCG→TCT) | PP_0414 → | polyamine ABC transporter permease |
| RA | 664,273 | T→C | 12.5% | L379P (CTG→CCG) | yfhM → | lipoprotein |
| RA | 699,725 | A→G | 57.2% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 807,424 | C→A | 11.1% | D205Y (GAC→TAC) | PP_0694 ← | hypothetical protein |
| RA | 1,011,323:1 | +T | 100% | intergenic (‑258/+192) | PP_0871 ← / ← SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| RA | 1,147,959 | G→C | 13.4% | G47A (GGG→GCG) | arcD‑II → | arginine/ornithine antiporter |
| RA | 1,147,969 | G→A | 13.5% | A50A (GCG→GCA) | arcD‑II → | arginine/ornithine antiporter |
| RA | 1,147,979 | T→C | 10.5% | L54L (TTG→CTG) | arcD‑II → | arginine/ornithine antiporter |
| RA | 1,147,982 | G→A | 10.8% | A55T (GCC→ACC) | arcD‑II → | arginine/ornithine antiporter |
| RA | 1,168,578 | C→A | 100% | intergenic (+47/‑71) | oprB‑I → / → yeaD | carbohydrate‑selective porin/glucose‑6‑phosphate 1‑epimerase |
| RA | 1,332,076 | C→T | 63.6% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,397,745 | A→G | 23.5% | N236S (AAT→AGT) | PP_1214 → | transcriptional regulator |
| RA | 1,507,474 | C→T | 20.0% | G142S (GGC→AGC) | tas ← | NAD(P)‑linked reductase |
| MC JC | 1,515,769 | Δ33 bp | 100% | pseudogene (757‑789/1851 nt) | PP_1325 ← | putative lipoprotein |
| RA | 1,558,207 | A→T | 16.2% | Q86L (CAG→CTG) | PP_1363 → | hypothetical protein |
| RA | 1,660,814 | G→T | 20.8% | L316M (CTG→ATG) | PP_1449 ← | hypothetical protein |
| RA | 1,856,513 | A→G | 100% | D203G (GAT→GGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 1,891,634 | C→T | 13.8% | A437V (GCG→GTG) | rmuC → | DNA recombination limiting inversions protein |
| RA | 1,982,697 | C→T | 100% | P457S (CCG→TCG) | PP_1770 → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 2,266,995 | A→T | 25.0% | E864V (GAA→GTA) | fimV → | motility protein FimV |
| RA | 2,284,838 | C→T | 11.1% | A329V (GCG→GTG) | fadH → | 2,4‑dienoyl‑CoA reductase |
| RA | 2,310,796 | G→T | 10.5% | L251L (CTC→CTA) | PP_2028 ← | TPR repeat‑containing protein |
| RA | 2,545,558 | G→T | 17.1% | E105* (GAA→TAA) | PP_2232 → | XRE family transcriptional regulator |
| RA | 2,562,186 | G→T | 36.0% | I39I (ATC→ATA) | PP_2241 ← | MFS transporter |
| RA | 2,592,539 | C→A | 30.8% | I304I (ATC→ATA) | PP_2266 → | DNA‑directed RNA polymerase |
| RA | 2,743,094 | G→T | 18.6% | G161* (GGA→TGA) | PP_2395 → | leucine‑rich repeat‑containing protein |
| RA | 2,834,812 | G→T | 36.3% | G142C (GGC→TGC) | PP_2482 → | molybdenum cofactor biosynthesis protein A |
| RA | 3,146,403 | C→A | 19.2% | R110S (CGC→AGC) | PP_2757 → | sugar‑binding protein |
| RA | 3,198,324 | G→A | 23.5% | A43A (GCC→GCT) | prr ← | gamma‑aminobutyraldehyde dehydrogenase |
| RA | 3,221,483 | C→A | 10.3% | T802T (ACC→ACA) | mexD → | multidrug RND transporter MexD |
| RA | 3,304,972 | G→A | 28.6% | A733T (GCC→ACC) | pvdQ → | acyl‑homoserine lactone acylase PvdQ |
| RA | 3,385,634 | C→T | 100% | A105V (GCT→GTT) | tnpT‑I → | cointegrate resolution protein T |
| RA | 3,450,733 | C→A | 100% | R45R (CGC→CGA) | gpD → | tail formation |
| RA | 3,451,094 | G→T | 11.4% | A166S (GCC→TCC) | gpD → | tail formation |
| RA | 3,644,469 | G→T | 21.0% | E164* (GAG→TAG) | PP_3206 → | hypothetical protein |
| RA | 3,817,284 | G→T | 17.4% | E206* (GAG→TAG) | PP_3368 → | MFS transporter |
| RA | 3,951,168 | T→C | 10.8% | S42G (AGC→GGC) | PP_3482 ← | hypothetical protein |
| RA | 4,018,201 | G→A | 100% | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,100,955 | G→T | 25.1% | L98F (TTG→TTT) | PP_5607 → | membrane protein |
| RA | 4,163,118 | G→T | 9.1% | L45L (CTG→CTT) | PP_3661 → | membrane protein |
| RA | 4,259,523 | C→T | 16.7% | R533H (CGC→CAC) | PP_3728 ← | two‑component system sensor histidine kinase/response regulator |
| RA | 4,342,644 | C→A | 13.8% | V97V (GTC→GTA) | PP_3812 → | lipase |
| RA | 4,353,698 | A→G | 35.7% | intergenic (‑70/+404) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,439,967 | T→A | 16.6% | I34N (ATT→AAT) | yfbS → | putative transporter |
| RA | 4,464,862 | C→A | 21.1% | A298A (GCC→GCA) | trkH‑I → | potassium transporter |
| RA | 4,664,263 | G→T | 28.4% | K40N (AAG→AAT) | nuoE → | NADH‑quinone oxidoreductasesubunit E |
| RA | 4,714,468 | C→A | 28.6% | L14L (CTG→CTT) | PP_4166 ← | hypothetical protein |
| RA | 4,745,039 | G→T | 25.0% | D191Y (GAC→TAC) | gltA → | citrate synthase |
| RA | 4,746,222:1 | +C | 100% | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,224 | A→G | 100% | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,226 | C→T | 100% | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,229 | C→T | 100% | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,232 | C→G | 100% | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,234 | 2 bp→CT | 100% | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,248 | C→T | 100% | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,250 | A→C | 100% | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,253 | 2 bp→GC | 100% | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,813,140 | G→T | 50.3% | intergenic (‑255/‑300) | PP_4234 ← / → dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| RA | 4,835,053 | C→A | 36.4% | P377P (CCG→CCT) | pvdL ← | non‑ribosomal peptide synthetase |
| RA | 4,931,947 | C→T | 9.7% | G310D (GGC→GAC) | cheBA ← | chemotaxis response regulator protein‑glutamate methylesterase |
| RA | 4,950,408 | A→G | 20.0% | intergenic (+774/+24) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| RA | 4,950,411 | G→A | 20.7% | intergenic (+777/+21) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| RA | 4,950,412 | C→A | 20.1% | intergenic (+778/+20) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| RA | 4,977,662 | C→T | 30.8% | G294S (GGC→AGC) | flgL ← | flagellar hook‑associated protein FlgL |
| RA | 4,995,991 | G→T | 10.8% | P46P (CCC→CCA) | PP_4399 ← | glutamine synthetase |
| RA | 5,209,780 | G→A | 10.0% | V49I (GTC→ATC) | PP_4585 → | TrmH family RNA methyltransferase |
| RA | 5,380,749 | C→T | 24.9% | E605K (GAG→AAG) | dnaK ← | chaperone protein DnaK |
| RA | 5,468,576 | G→T | 25.0% | H296N (CAC→AAC) | lipA ← | lipoyl synthase |
| RA | 5,514,902 | T→G | 44.6% | L35R (CTG→CGG) | urtB → | urea ABC transporter permease |
| RA | 5,527,127 | T→C | 15.4% | D93D (GAT→GAC) | PP_4855 → | osmotically‑inducible lipoprotein OsmE |
| RA | 5,552,249 | C→T | 29.4% | R601H (CGC→CAC) | rnr ← | exoribonuclease R |
| RA | 5,677,577 | C→A | 23.5% | intergenic (+38/‑181) | PP_4979 → / → rhlE‑II | substrate‑binding protein/ATP‑dependent RNA helicase |
| RA | 5,705,255 | G→A | 12.1% | C243Y (TGC→TAC) | phaA → | poly(3‑hydroxyalkanoate) polymerase |
| RA | 5,716,438 | G→A | 17.4% | G91E (GGG→GAG) | ubiE → | ubiquinone/menaquinone biosynthesis C‑methyltransferase UbiE |
| RA | 5,778,524 | G→T | 42.5% | G28W (GGG→TGG) | betI → | choline‑responsive transcriptional repressor BetI |
| RA | 5,801,147 | G→T | 21.0% | V586V (GTC→GTA) | gltB ← | L‑glutamate synthase subunit alpha |
| RA | 5,862,978 | G→A | 10.8% | G174G (GGG→GGA) | PP_5134 → | hypothetical protein |
| RA | 5,931,794 | G→A | 9.5% | P369L (CCC→CTC) | PP_5195 ← | iron ABC transporter permease |
| RA | 5,945,268 | G→T | 25.0% | V34V (GTG→GTT) | yhhJ → | translation‑like protein |
| RA | 5,952,826 | T→C | 19.1% | E218G (GAA→GGA) | rho ← | transcription termination factor Rho |
| RA | 5,993,814 | G→A | 33.3% | intergenic (+103/‑443) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,148,724 | G→T | 19.1% | M100I (ATG→ATT) | cusF → | copper efflux protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 33088 | 33126 | 39 | 2 [1] | [1] 2 | czcR‑I | heavy metal two‑component system response regulator |
| * | * | ÷ | NC_002947 | 41498 | 41607 | 110 | 3 [1] | [1] 3 | oprP | porin P |
| * | * | ÷ | NC_002947 | 45457 | 45534 | 78 | 3 [1] | [0] 2 | [cadA‑I] | [cadA‑I] |
| * | * | ÷ | NC_002947 | 47263 | 47281 | 19 | 2 [0] | [1] 2 | czcA‑I | cation efflux system protein |
| * | * | ÷ | NC_002947 | 55997 | 56132 | 136 | 3 [1] | [1] 2 | PP_5423/PP_0049 | membrane protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 85075 | 85099 | 25 | 2 [1] | [0] 2 | aroE/PP_0075 | shikimate 5‑dehydrogenase/choline sulfate transporter |
| * | * | ÷ | NC_002947 | 91741 | 91820 | 80 | 3 [1] | [1] 2 | trpA | tryptophan synthase subunit alpha |
| * | * | ÷ | NC_002947 | 97567 | 97618 | 52 | 2 [1] | [1] 2 | [PP_0090]–[PP_0091] | [PP_0090],[PP_0091] |
| * | * | ÷ | NC_002947 | 170778 | 171003–170883 | 106–226 | 2 [1] | [1] 2 | [PP_0159] | [PP_0159] |
| * | * | ÷ | NC_002947 | 171396–172965 | 176318–172968 | 4–4923 | 2 [0] | [1] 2 | [PP_16SA]–[PP_5SA] | [PP_16SA],PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176672–178395 | 181707–178398 | 4–5036 | 2 [0] | [0] 2 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 188061 | 188112 | 52 | 2 [1] | [1] 2 | PP_0165 | GGDEF domain‑containing protein |
| * | * | ÷ | NC_002947 | 220575 | 220629 | 55 | 2 [1] | [1] 2 | PP_0168/PP_5431 | putative surface adhesion protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 267445 | 267479 | 35 | 2 [1] | [1] 4 | PP_0215 | two‑component system response regulator |
| * | * | ÷ | NC_002947 | 284562 | 284627 | 66 | 2 [0] | [1] 2 | [atsK] | [atsK] |
| * | * | ÷ | NC_002947 | 353076 | 353128 | 53 | 2 [1] | [1] 2 | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| * | * | ÷ | NC_002947 | 358094 | 358101 | 8 | 2 [0] | [1] 2 | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| * | * | ÷ | NC_002947 | 436288 | 436329 | 42 | 2 [0] | [0] 3 | PP_0357/PP_0358 | ACT domain‑containing protein/membrane protein |
| * | * | ÷ | NC_002947 | 445104 | 445135 | 32 | 2 [1] | [0] 3 | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| * | * | ÷ | NC_002947 | 524143 | 524224 | 82 | 2 [1] | [1] 4 | tyrS/PP_16SC | tyrosine‑‑tRNA ligase/16S ribosomal RNA |
| * | * | ÷ | NC_002947 | 540037 | 540042 | 6 | 2 [1] | [1] 2 | rpoB | DNA‑directed RNA polymerase subunit beta |
| * | * | ÷ | NC_002947 | 545935 | 545956 | 22 | 2 [1] | [1] 2 | rpoC | DNA‑directed RNA polymerase subunit beta' |
| * | * | ÷ | NC_002947 | 553543 | 553561 | 19 | 2 [0] | [1] 2 | rpsS | 30S ribosomal protein S19 |
| * | * | ÷ | NC_002947 | 614252 | 614340 | 89 | 2 [1] | [0] 3 | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| * | * | ÷ | NC_002947 | 681272 | 681323 | 52 | 2 [1] | [1] 3 | PP_0583/PP_0584 | AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer |
| * | * | ÷ | NC_002947 | 693591 | 693652 | 62 | 2 [0] | [1] 3 | PP_0595 | LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 708380 | 708423 | 44 | 2 [1] | [1] 2 | murJ | lipid II flippase |
| * | * | ÷ | NC_002947 | 718438 | 718482 | 45 | 2 [1] | [1] 2 | thiO/PP_0613 | FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein |
| * | * | ÷ | NC_002947 | 796811 | 796888 | 78 | 2 [1] | [1] 2 | PP_0681/PP_0682 | hypothetical protein/inner membrane protein |
| * | * | ÷ | NC_002947 | 863866 | 863923 | 58 | 2 [1] | [1] 2 | [hemH]–[uraA] | [hemH],[uraA] |
| * | * | ÷ | NC_002947 | 955151 | 955182 | 32 | 2 [1] | [1] 2 | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
| * | * | ÷ | NC_002947 | 1007513 | 1007600 | 88 | 2 [1] | [1] 2 | [yehX] | [yehX] |
| * | * | ÷ | NC_002947 | 1011431 | 1011432 | 2 | 2 [0] | [0] 4 | PP_0871/SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| * | * | ÷ | NC_002947 | 1030214 | 1030268 | 55 | 2 [1] | [1] 2 | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein |
| * | * | ÷ | NC_002947 | 1118763 | 1118867 | 105 | 2 [1] | [1] 2 | [rlmF] | [rlmF] |
| * | * | ÷ | NC_002947 | 1161294 | 1161323 | 30 | 3 [1] | [0] 2 | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase |
| * | * | ÷ | NC_002947 | 1188038 | 1188072 | 35 | 2 [1] | [1] 2 | mltF | membrane‑bound lytic murein transglycosylase F |
| * | * | ÷ | NC_002947 | 1232702 | 1232718 | 17 | 3 [1] | [1] 2 | PP_1072 | leucine‑rich repeat‑containing protein |
| * | * | ÷ | NC_002947 | 1372663 | 1372700 | 38 | 2 [1] | [1] 2 | PP_1193 | membrane protein |
| * | * | ÷ | NC_002947 | 1408543 | 1408558 | 16 | 2 [1] | [1] 2 | PP_1227/PP_1228 | membrane protein/methyl‑accepting chemotaxis transducer |
| * | * | ÷ | NC_002947 | 1414064 | 1414079 | 16 | 2 [1] | [0] 2 | PP_1230/nadA | hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit |
| * | * | ÷ | NC_002947 | 1423140 | 1423182 | 43 | 2 [0] | [1] 2 | purC | phosphoribosylaminoimidazole‑succinocarboxamide synthase |
| * | * | ÷ | NC_002947 | 1467966 | 1467992 | 27 | 3 [1] | [1] 2 | algI/algL | alginate O‑acetylase AlgI/alginate lyase |
| * | * | ÷ | NC_002947 | 1469152 | 1469201 | 50 | 2 [0] | [1] 2 | algX | alginate biosynthesis protein AlgX |
| * | * | ÷ | NC_002947 | 1479926 | 1480007 | 82 | 2 [1] | [1] 2 | [PP_1289] | [PP_1289] |
| * | * | ÷ | NC_002947 | 1491997 | 1492016 | 20 | 2 [1] | [1] 2 | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| * | * | ÷ | NC_002947 | 1504379 | 1504493 | 115 | 2 [1] | [1] 2 | [trpS] | [trpS] |
| * | * | ÷ | NC_002947 | 1570575 | 1570602 | 28 | 2 [0] | [1] 3 | pitB/PP_1374 | phosphate transporter/hypothetical protein |
| * | * | ÷ | NC_002947 | 1597568 | 1597625 | 58 | 2 [1] | [1] 2 | PP_1397 | hypothetical protein |
| * | * | ÷ | NC_002947 | 1620640 | 1620731 | 92 | 3 [1] | [1] 2 | PP_1415 | membrane protein |
| * | * | ÷ | NC_002947 | 1622774 | 1622828 | 55 | 3 [1] | [0] 2 | PP_1417/PP_1418 | tricarboxylate transport protein TctB/tricarboxylate transport protein TctC |
| * | * | ÷ | NC_002947 | 1644514 | 1644601 | 88 | 3 [1] | [0] 2 | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| * | * | ÷ | NC_002947 | 1648220 | 1648229 | 10 | 2 [0] | [1] 3 | lon‑I | DNA‑binding ATP‑dependent protease |
| * | * | ÷ | NC_002947 | 1668085 | 1668154 | 70 | 2 [1] | [1] 2 | yhjE | metabolite transport protein YhjE |
| * | * | ÷ | NC_002947 | 1709612 | 1709655 | 44 | 2 [1] | [1] 2 | [PP_1499] | [PP_1499] |
| * | * | ÷ | NC_002947 | 1736179 | 1736200 | 22 | 2 [1] | [1] 2 | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase |
| * | * | ÷ | NC_002947 | 1796614 | 1796654 | 41 | 2 [1] | [1] 2 | rseP | regulatory intramembrane protein RIP |
| * | * | ÷ | NC_002947 | 1926508 | 1926562 | 55 | 2 [1] | [1] 2 | [PP_1720] | [PP_1720] |
| * | * | ÷ | NC_002947 | 1930705 | 1930735 | 31 | 2 [1] | [0] 2 | PP_1725/PP_1726 | hypothetical protein/ABC transporter substrate‑binding protein |
| * | * | ÷ | NC_002947 | 1935370 | 1935458 | 89 | 2 [1] | [1] 3 | [apeB] | [apeB] |
| * | * | ÷ | NC_002947 | 1952778 | 1952810 | 33 | 3 [1] | [1] 2 | PP_1748/PP_1749 | hypothetical protein/acetyltransferase |
| * | * | ÷ | NC_002947 | 1975748 | 1975773 | 26 | 2 [1] | [1] 2 | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region |
| * | * | ÷ | NC_002947 | 2001174 | 2001272 | 99 | 3 [1] | [1] 2 | rfbC | dTDP‑4‑dehydrorhamnose 3,5‑epimerase |
| * | * | ÷ | NC_002947 | 2003390 | 2003507 | 118 | 2 [1] | [1] 3 | rffG | dTDP‑glucose 4,6‑dehydratase |
| * | * | ÷ | NC_002947 | 2006893 | 2006901 | 9 | 2 [1] | [0] 2 | PP_1786 | glycosyl transferase |
| * | * | ÷ | NC_002947 | 2008699 | 2008843 | 145 | 2 [1] | [1] 2 | PP_1787 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2028395 | 2028426 | 32 | 2 [1] | [1] 3 | rmd | oxidoreductase Rmd |
| * | * | ÷ | NC_002947 | 2104942 | 2104994 | 53 | 2 [0] | [1] 2 | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| * | * | ÷ | NC_002947 | 2108290 | 2108382 | 93 | 2 [1] | [1] 2 | [PP_1879] | [PP_1879] |
| * | * | ÷ | NC_002947 | 2130752 | 2130893 | 142 | 2 [1] | [1] 2 | PP_1887 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2132585 | 2132714 | 130 | 2 [1] | [1] 2 | PP_1887 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2133452 | 2133533 | 82 | 2 [0] | [0] 3 | [PP_1887] | [PP_1887] |
| * | * | ÷ | NC_002947 | 2187040 | 2187074 | 35 | 2 [1] | [0] 2 | PP_1935/PP_5487 | Cro/CI family transcriptional regulator/hypothetical protein |
| * | * | ÷ | NC_002947 | 2188462 | 2188466 | 5 | 2 [1] | [0] 2 | PP_5489 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2194508 | 2194714 | 207 | 2 [1] | [1] 2 | PP_1937 | helicase |
| * | * | ÷ | NC_002947 | 2207164 | 2207201 | 38 | 2 [1] | [1] 2 | PP_1946/PP_1947 | short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein |
| * | * | ÷ | NC_002947 | 2208176 | 2208210 | 35 | 2 [1] | [1] 2 | PP_1947 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2216402 | 2216467 | 66 | 2 [1] | [1] 3 | PP_1954 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2218187 | 2218230 | 44 | 2 [1] | [1] 3 | PP_1956 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2221050 | 2221114 | 65 | 2 [1] | [1] 2 | PP_1957/PP_5493 | Pdr/VanB family oxidoreductase/hypothetical protein |
| * | * | ÷ | NC_002947 | 2221439 | 2221519 | 81 | 3 [1] | [1] 3 | PP_5493/PP_5494 | hypothetical protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 2227622 | 2227652 | 31 | 2 [1] | [1] 3 | PP_1962 | site‑specific recombinase |
| * | * | ÷ | NC_002947 | 2246006 | 2246029 | 24 | 2 [1] | [0] 2 | gltX | glutamate‑‑tRNA ligase |
| * | * | ÷ | NC_002947 | 2246257 | 2246313 | 57 | 2 [1] | [1] 3 | gltX/PP_t25 | glutamate‑‑tRNA ligase/tRNA‑Ala |
| * | * | ÷ | NC_002947 | 2300823 | 2300857 | 35 | 2 [0] | [1] 2 | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein |
| * | * | ÷ | NC_002947 | 2323211 | 2323217 | 7 | 3 [1] | [0] 4 | PP_2039 | acyl‑CoA dehydrogenase |
| * | * | ÷ | NC_002947 | 2342120 | 2342245 | 126 | 2 [1] | [1] 2 | [PP_2053]–[ybhD] | [PP_2053],[ybhD] |
| * | * | ÷ | NC_002947 | 2343767 | 2343822 | 56 | 2 [0] | [1] 2 | PP_2055 | isomerase |
| * | * | ÷ | NC_002947 | 2379726 | 2379749 | 24 | 6 [1] | [1] 2 | ppsA | phosphoenolpyruvate synthetase |
| * | * | ÷ | NC_002947 | 2432303 | 2432316 | 14 | 2 [1] | [0] 2 | PP_5503 | CheA signal transduction histidine kinase |
| * | * | ÷ | NC_002947 | 2434910 | 2434917 | 8 | 2 [0] | [0] 2 | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| * | * | ÷ | NC_002947 | 2455360 | 2455423 | 64 | 2 [1] | [0] 2 | PP_2146 | SNF2/RAD54 family helicase |
| * | * | ÷ | NC_002947 | 2477080 | 2477093 | 14 | 2 [1] | [0] 21 | [PP_2166] | [PP_2166] |
| * | * | ÷ | NC_002947 | 2479137 | 2479149 | 13 | 3 [1] | [1] 2 | PP_2167/tal | PhoD‑like phosphatase/transaldolase |
| * | * | ÷ | NC_002947 | 2482144 | 2482189 | 46 | 2 [1] | [1] 2 | [PP_2170] | [PP_2170] |
| * | * | ÷ | NC_002947 | 2482452 | 2482486 | 35 | 2 [1] | [0] 2 | PP_2171 | LysE family transporter |
| * | * | ÷ | NC_002947 | 2483323 | 2483525 | 203 | 2 [1] | [1] 2 | PP_2172 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2596933 | 2596981 | 49 | 2 [1] | [1] 3 | PP_2270 | DNA primase/helicase |
| * | * | ÷ | NC_002947 | 2603243 | 2603326 | 84 | 2 [1] | [1] 2 | PP_2276 | exonuclease |
| * | * | ÷ | NC_002947 | 2604168 | 2604181 | 14 | 2 [0] | [1] 2 | PP_2277 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2615380 | 2615472 | 93 | 2 [1] | [1] 2 | PP_2286 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2625401 | 2625442 | 42 | 2 [1] | [1] 2 | PP_2293 | DNA maturase B |
| * | * | ÷ | NC_002947 | 2625659 | 2625683 | 25 | 2 [1] | [1] 2 | PP_2293 | DNA maturase B |
| * | * | ÷ | NC_002947 | 2627552 | 2627598 | 47 | 3 [1] | [1] 4 | PP_5516 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2668993 | 2669089 | 97 | 2 [1] | [1] 3 | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
| * | * | ÷ | NC_002947 | 2673032 | 2673079 | 48 | 2 [0] | [0] 2 | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| * | * | ÷ | NC_002947 | 2699990 | 2700068 | 79 | 2 [1] | [1] 2 | PP_2362 | usher protein |
| * | * | ÷ | NC_002947 | 2764348 | 2764425 | 78 | 2 [1] | [1] 2 | PP_2413 | GGDEF domain‑containing protein |
| * | * | ÷ | NC_002947 | 2798758 | 2798768 | 11 | 2 [1] | [0] 2 | PP_2445/PP_2446 | membrane protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 2803042 | 2803051 | 10 | 2 [1] | [1] 2 | endX | extracellular DNA endonuclease |
| * | * | ÷ | NC_002947 | 2814279 | 2814339 | 61 | 2 [1] | [1] 2 | PP_5525/thrS | hypothetical protein/threonine‑‑tRNA ligase |
| * | * | ÷ | NC_002947 | 2825643 | 2825693 | 51 | 4 [1] | [1] 2 | PP_2473/PP_2474 | hypothetical protein/glutathione S‑transferase family protein |
| * | * | ÷ | NC_002947 | 2842070 | 2842257 | 188 | 2 [1] | [1] 2 | [PP_2489] | [PP_2489] |
| * | * | ÷ | NC_002947 | 2870431 | 2870477 | 47 | 3 [1] | [1] 2 | gllP/glllA | porin‑like protein/gallate dioxygenase |
| * | * | ÷ | NC_002947 | 2925109 | 2925151 | 43 | 2 [1] | [1] 3 | PP_2561 | hemolysin‑type calcium‑binding bacteriocin |
| * | * | ÷ | NC_002947 | 3115905 | 3115947 | 43 | 2 [1] | [1] 4 | PP_2724/pfpI | hypothetical protein/protease PfpI |
| * | * | ÷ | NC_002947 | 3157279 | 3157319 | 41 | 2 [1] | [1] 3 | PP_2768 | branched‑chain amino acid ABC transporter permease |
| * | * | ÷ | NC_002947 | 3207167 | 3207179 | 13 | 2 [1] | [1] 2 | PP_2809 | membrane protein |
| * | * | ÷ | NC_002947 | 3209035 | 3209046 | 12 | 3 [1] | [1] 2 | PP_2810 | hypothetical protein |
| * | * | ÷ | NC_002947 | 3308687 | 3308693 | 7 | 2 [1] | [0] 2 | cysS | cysteine‑‑tRNA ligase |
| * | * | ÷ | NC_002947 | 3356698 | 3356705 | 8 | 3 [1] | [1] 2 | arfB/PP_2947 | peptidyl‑tRNA hydrolase/transcriptional regulator MvaT |
| * | * | ÷ | NC_002947 | 3357658 | 3357697 | 40 | 2 [0] | [0] 2 | PP_2948 | GntR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 3358661 | 3358724 | 64 | 2 [1] | [1] 2 | PP_2948/PP_2949 | GntR family transcriptional regulator/permease |
| * | * | ÷ | NC_002947 | 3359346 | 3359364 | 19 | 3 [1] | [1] 2 | PP_2949 | permease |
| * | * | ÷ | NC_002947 | 3362350 | 3362378 | 29 | 3 [1] | [0] 2 | PP_2953 | alcohol dehydrogenase |
| * | * | ÷ | NC_002947 | 3373004 | 3373211 | 208 | 2 [1] | [1] 2 | PP_2964 | transposase |
| * | * | ÷ | NC_002947 | 3378953 | 3379008 | 56 | 2 [1] | [0] 2 | [PP_2972] | [PP_2972] |
| * | * | ÷ | NC_002947 | 3381254 | 3381315 | 62 | 4 [1] | [1] 2 | PP_2975 | insertion element ISR1 protein A3 |
| * | * | ÷ | NC_002947 | 3471817 | 3471905 | 89 | 2 [0] | [1] 2 | [PP_3081] | [PP_3081] |
| * | * | ÷ | NC_002947 | 3504154 | 3504162 | 9 | 2 [1] | [1] 2 | PP_5563/PP_5565 | membrane protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 3781353 | 3781407 | 55 | 2 [0] | [1] 3 | PP_3338/PP_3339 | cytochrome bd‑type quinol oxidase/hypothetical protein |
| * | * | ÷ | NC_002947 | 3940381 | 3940383 | 3 | 4 [0] | [0] 2 | PP_3467 | sigma‑54 dependent transcriptional regulator |
| * | * | ÷ | NC_002947 | 3956084 | 3956155 | 72 | 4 [0] | [1] 2 | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
| * | * | ÷ | NC_002947 | 4054901 | 4054944 | 44 | 2 [1] | [1] 2 | quiA/oprB‑III | quinate dehydrogenase/carbohydrate‑selective porin |
| * | * | ÷ | NC_002947 | 4060245 | 4060266 | 22 | 2 [1] | [1] 2 | [PP_3575] | [PP_3575] |
| * | * | ÷ | NC_002947 | 4155018 | 4155126 | 109 | 3 [1] | [1] 2 | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein |
| * | * | ÷ | NC_002947 | 4175150 | 4175214 | 65 | 2 [1] | [1] 3 | katG/PP_3669 | catalase‑peroxidase/LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 4184715 | 4184815 | 101 | 2 [1] | [1] 2 | PP_5610 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4188872 | 4188927 | 56 | 2 [1] | [1] 2 | PP_3680 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4200878 | 4200894 | 17 | 2 [1] | [1] 2 | PP_5618 | Cro/CI family transcriptional regulator |
| * | * | ÷ | NC_002947 | 4214604 | 4214649 | 46 | 3 [1] | [1] 2 | PP_3692 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4215820 | 4215845 | 26 | 2 [1] | [0] 2 | PP_5621 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4228184 | 4228220 | 37 | 2 [1] | [0] 2 | PP_3703 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4228285 | 4228343 | 59 | 2 [0] | [1] 2 | PP_3703 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4231692 | 4231733 | 42 | 2 [1] | [1] 4 | PP_5623 | membrane protein |
| * | * | ÷ | NC_002947 | 4316300 | 4316358 | 59 | 2 [0] | [1] 2 | PP_3784 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4345036 | 4345090 | 55 | 2 [1] | [1] 2 | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| * | * | ÷ | NC_002947 | 4349279 | 4349304 | 26 | 2 [1] | [0] 2 | PP_3817/PP_3818 | polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein |
| * | * | ÷ | NC_002947 | 4358172 | 4358191 | 20 | 2 [1] | [0] 4 | yrpB | 2‑nitropropane dioxygenase |
| * | * | ÷ | NC_002947 | 4378268 | 4378383 | 116 | 2 [1] | [1] 2 | PP_3849 | hemolysin‑type calcium‑binding protein |
| * | * | ÷ | NC_002947 | 4417540 | 4417618 | 79 | 2 [1] | [1] 2 | PP_3897 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4470091 | 4470123 | 33 | 2 [0] | [0] 5 | betT‑III | choline/carnitine/betaine transporter BetTC |
| * | * | ÷ | NC_002947 | 4534993 | 4535060 | 68 | 2 [1] | [0] 2 | PP_4018/topB | acetyltransferase/DNA topoisomerase III |
| * | * | ÷ | NC_002947 | 4557008 | 4557017 | 10 | 2 [0] | [1] 2 | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
| * | * | ÷ | NC_002947 | 4578235 | 4578254 | 20 | 3 [1] | [1] 2 | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
| * | * | ÷ | NC_002947 | 4588522 | 4588592 | 71 | 2 [1] | [1] 3 | [glgE] | [glgE] |
| * | * | ÷ | NC_002947 | 4630635 | 4630660 | 26 | 2 [1] | [1] 2 | PP_5654/PP_4091 | phosphotriesterase/transposase |
| * | * | ÷ | NC_002947 | 4634680 | 4634742 | 63 | 2 [1] | [1] 2 | [PP_5655]–[PP_4094] | [PP_5655],[PP_4094] |
| * | * | ÷ | NC_002947 | 4653222 | 4653291 | 70 | 2 [1] | [1] 2 | PP_4112 | sulfate transporter |
| * | * | ÷ | NC_002947 | 4680290 | 4680392 | 103 | 2 [1] | [1] 3 | [PP_4137] | [PP_4137] |
| * | * | ÷ | NC_002947 | 4730192 | 4730210 | 19 | 2 [1] | [1] 2 | PP_4183 | membrane protein |
| * | * | ÷ | NC_002947 | 4745787 | 4745859 | 73 | 2 [1] | [1] 3 | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | * | ÷ | NC_002947 | 4801569 | 4801644 | 76 | 2 [1] | [1] 2 | pvdH/PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| * | * | ÷ | NC_002947 | 4847891 | 4847900 | 10 | 3 [1] | [1] 2 | ccoP‑II/PP_4259 | cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein |
| * | * | ÷ | NC_002947 | 4857448 | 4857484 | 37 | 6 [0] | [1] 2 | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| * | * | ÷ | NC_002947 | 4875672 | 4875682 | 11 | 2 [0] | [1] 4 | xdhB/xdhC | xanthine dehydrogenase subunit XdhB/xanthine dehydrogenase accessory factor |
| * | * | ÷ | NC_002947 | 4955946 | 4956028 | 83 | 2 [1] | [1] 2 | [fliK] | [fliK] |
| * | * | ÷ | NC_002947 | 5020514 | 5020530 | 17 | 2 [1] | [1] 3 | [PP_5679] | [PP_5679] |
| * | * | ÷ | NC_002947 | 5029323 | 5029349 | 27 | 2 [0] | [1] 3 | PP_4429 | GntR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 5059066 | 5059202 | 137 | 2 [1] | [1] 2 | gsiA | glutathione ABC transporter ATP‑binding protein |
| * | * | ÷ | NC_002947 | 5069168 | 5069224 | 57 | 2 [1] | [1] 2 | PP_4461 | MFS transporter |
| * | * | ÷ | NC_002947 | 5073674 | 5073827 | 154 | 2 [1] | [1] 2 | PP_4465 | porin |
| * | * | ÷ | NC_002947 | 5073945 | 5074029 | 85 | 2 [1] | [1] 2 | PP_4465 | porin |
| * | * | ÷ | NC_002947 | 5075783 | 5075898 | 116 | 3 [1] | [1] 3 | [PP_4466] | [PP_4466] |
| * | * | ÷ | NC_002947 | 5076326 | 5076491 | 166 | 2 [0] | [1] 2 | PP_4467 | LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 5167611 | 5167631 | 21 | 2 [0] | [0] 2 | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase |
| * | * | ÷ | NC_002947 | 5197721 | 5197760 | 40 | 2 [1] | [1] 2 | PP_4572/PP_4573 | hypothetical protein/AAA family ATPase |
| * | * | ÷ | NC_002947 | 5204641 | 5204694 | 54 | 2 [1] | [1] 2 | PP_4579/PP_4580 | LysR family transcriptional regulator/hypothetical protein |
| * | * | ÷ | NC_002947 | 5261790 | 5261887 | 98 | 2 [1] | [1] 2 | [PP_5703] | [PP_5703] |
| * | * | ÷ | NC_002947 | 5262860–5262888 | 5262899 | 12–40 | 4 [1] | [1] 2 | PP_4634/PP_4635 | alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase |
| * | * | ÷ | NC_002947 | 5411016 | 5411021 | 6 | 2 [1] | [1] 2 | PP_4750 | amino acid ABC transporter permease |
| * | * | ÷ | NC_002947 | 5490103 | 5490209 | 107 | 2 [1] | [1] 3 | purH/purD | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase |
| * | * | ÷ | NC_002947 | 5511572 | 5511609 | 38 | 2 [1] | [0] 4 | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease |
| * | * | ÷ | NC_002947 | 5540464 | 5540511 | 48 | 2 [1] | [1] 3 | pncB | nicotinate phosphoribosyltransferase |
| * | * | ÷ | NC_002947 | 5542037 | 5542125 | 89 | 2 [1] | [1] 2 | [PP_4870] | [PP_4870] |
| * | * | ÷ | NC_002947 | 5562875 | 5562926 | 52 | 2 [1] | [1] 2 | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase |
| * | * | ÷ | NC_002947 | 5645280 | 5645300 | 21 | 2 [0] | [1] 3 | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter |
| * | * | ÷ | NC_002947 | 5657974 | 5658006 | 33 | 2 [0] | [1] 3 | PP_4961/PP_4962 | lipoprotein/hypothetical protein |
| * | * | ÷ | NC_002947 | 5658283 | 5658328 | 46 | 2 [1] | [1] 2 | [PP_4962]–[pgk] | [PP_4962],[pgk] |
| * | * | ÷ | NC_002947 | 5660618 | 5660647 | 30 | 3 [1] | [1] 3 | epd/tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| * | * | ÷ | NC_002947 | 5902751 | 5902840 | 90 | 2 [1] | [1] 2 | [PP_5173] | [PP_5173] |
| * | * | ÷ | NC_002947 | 5908157 | 5908205 | 49 | 2 [1] | [1] 2 | PP_5175/PP_5176 | HlyD family secretion protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 5973447 | 5973481 | 35 | 2 [0] | [1] 2 | PP_5723 | hypothetical protein |
| * | * | ÷ | NC_002947 | 5989445 | 5989479 | 35 | 2 [1] | [1] 2 | PP_5242/ycaC‑II | GAF domain‑containing sensor histidine kinase/putative hydrolase |
| * | * | ÷ | NC_002947 | 6018847 | 6018875 | 29 | 7 [1] | [0] 4 | xpt/PP_5266 | xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein |
| * | * | ÷ | NC_002947 | 6032902 | 6032961 | 60 | 2 [1] | [1] 2 | PP_5277/kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
| * | * | ÷ | NC_002947 | 6036795 | 6036817 | 23 | 2 [1] | [0] 2 | dppA‑IV | dipeptide transport protein |
| * | * | ÷ | NC_002947 | 6087707 | 6087794 | 88 | 3 [1] | [1] 2 | purK | 5‑(carboxyamino)imidazole ribonucleotide synthase |
| * | * | ÷ | NC_002947 | 6103171 | 6103194 | 24 | 3 [1] | [1] 2 | PP_5730/PP_5350 | hypothetical protein/RpiR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 6103328 | 6103409 | 82 | 2 [1] | [1] 2 | PP_5350 | RpiR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 6172593 | 6172697 | 105 | 2 [1] | [1] 2 | PP_5407 | TnsD‑like transposition protein |
| * | * | ÷ | NC_002947 | 6174246 | 6174306 | 61 | 2 [0] | [1] 2 | PP_5408 | hypothetical protein |
| * | * | ÷ | NC_002947 | 6185024 | 6185037 | 14 | 2 [0] | [0] 2 | atpF | ATP synthase subunit b |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652785 | 16 (1.070) | 5 (0.440) +29 bp |
3/186 | NT | 39.7% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4813156 | 4 (0.270) | intergenic (‑271/‑284) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | = 746963 | NA (NA) | 9 (0.610) | 8/242 | NT | 90.1% | intergenic (‑87/‑707) | PP_0638/PP_5448 | transposase/hypothetical protein |
| ? | NC_002947 | = 1015822 | 1 (0.070) | intergenic (‑49/‑719) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 | |||||
| * | ? | NC_002947 | 1849125 = | 0 (0.000) | 15 (1.050) | 13/234 | NT | 96.8% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2184368 | 1 (0.070) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1849128 | 0 (0.000) | 12 (0.830) | 11/236 | NT | 77.4% | coding (657/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 2182694 = | 7 (0.480) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||
| * | ? | NC_002947 | = 2090429 | 11 (0.740) | 5 (0.340) +C |
4/242 | NT | 35.9% | intergenic (+146/‑449) | PP_1864/PP_1865 | hypothetical protein/transposase |
| ? | NC_002947 | = 2090736 | 7 (0.470) | intergenic (+453/‑142) | PP_1864/PP_1865 | hypothetical protein/transposase | |||||
| * | ? | NC_002947 | 2477094 = | 0 (0.000) | 12 (1.180) | 6/166 | NT | 85.7% | intergenic (+6/+143) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947 | 2477218 = | 4 (0.390) | intergenic (+130/+19) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase | |||||
| * | ? | NC_002947 | 4027890 = | 49 (3.280) | 6 (0.420) | 5/234 | NT | 15.4% | intergenic (‑592/+76) | PP_3547/emrB | NAD(P)‑binding oxidoreductase/multidrug transporter permease |
| ? | NC_002947 | 4912947 = | 19 (1.330) | coding (72/198 nt) | PP_4317 | hypothetical protein | |||||
| * | ? | NC_002947 | 4813168 = | 1 (0.070) | 18 (1.530) | 5/192 | NT | 45.1% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | 5993784 = | 43 (3.660) | intergenic (+73/‑473) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||