breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	1,706	G→C	5.1%	L39V (CTC→GTC)	parA ←	chromosome partition protein
RA	1,707	G→C	5.1%	D38E (GAC→GAG)	parA ←	chromosome partition protein
RA	6,346	T→G	5.1%	T13P (ACG→CCG)	trmE ←	GTPase
RA	7,287	G→A	5.1%	N289N (AAC→AAT) ‡	oxaA ←	membrane protein insertase
RA	7,288	T→A	5.1%	N289I (AAC→ATC) ‡	oxaA ←	membrane protein insertase
RA	7,289	T→C	5.2%	N289D (AAC→GAC) ‡	oxaA ←	membrane protein insertase
RA	26,844	A→T	6.9%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	35,009	A→G	6.7%	intergenic (+27/+31)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	35,012	C→T	6.4%	intergenic (+30/+28)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	45,680	C→G	5.9%	intergenic (‑156/+47)	cadA‑I ← / ← PP_0042	cadmium translocating P‑type ATPase/hypothetical protein
RA	58,747	T→A	11.2%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	10.8%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	78,508	G→C	5.1%	intergenic (‑36/+25)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	81,031	T→G	6.2%	intergenic (+88/‑46)	tsaC → / → PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
RA	81,032	T→A	5.7%	intergenic (+89/‑45)	tsaC → / → PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
RA	81,033	C→A	5.8%	intergenic (+90/‑44)	tsaC → / → PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
RA	85,066	T→C	7.6%	intergenic (+44/+86)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,074	A→G	7.3%	intergenic (+52/+78)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,077	T→G	8.5%	intergenic (+55/+75)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,078:1	+T	7.7%	intergenic (+56/+74)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,081	T→G	8.5%	intergenic (+59/+71)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,088	C→A	7.8%	intergenic (+66/+64)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,091	Δ1 bp	6.8%	intergenic (+69/+61)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,093	C→A	7.2%	intergenic (+71/+59)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,096	C→T	7.3%	intergenic (+74/+56)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,104	G→A	5.8%	intergenic (+82/+48)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	90,430	G→T	5.5%	intergenic (+105/+17)	PP_0079 → / ← PP_0080	transcriptional regulator/hypothetical protein
RA	90,431	C→G	5.5%	intergenic (+106/+16)	PP_0079 → / ← PP_0080	transcriptional regulator/hypothetical protein
RA	90,432	A→C	7.2%	intergenic (+107/+15)	PP_0079 → / ← PP_0080	transcriptional regulator/hypothetical protein
RA	95,665	A→C	8.2%	intergenic (+57/+15)	PP_0087 → / ← PP_0088	hypothetical protein/alkanal monooxygenase
RA	97,588	C→G	6.6%	intergenic (+17/+19)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	117,432	G→A	5.6%	A218V (GCC→GTC)	metQ ←	methionine ABC transporter substrate‑binding protein
RA	126,115	A→G	6.0%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	6.0%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	127,121	C→G	7.1%	intergenic (‑31/+39)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	127,122	C→G	7.1%	intergenic (‑32/+38)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	127,123	G→C	7.2%	intergenic (‑33/+37)	thrB ← / ← PP_0122	homoserine kinase/hypothetical protein
RA	139,740	T→G	6.1%	Q255P (CAG→CCG)	kinB ←	alginate biosynthesis sensor protein KinB
RA	139,749	A→C	8.0%	L252R (CTG→CGG)	kinB ←	alginate biosynthesis sensor protein KinB
RA	161,733	A→C	17.6%	intergenic (‑228/+18)	PP_0152 ← / ← PP_0153	hypothetical protein/hypothetical protein
RA	181,805	T→C	13.6%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,811	C→T	11.5%	intergenic (+25/‑81)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	11.9%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	11.0%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	182,034	G→A	10.3%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	10.6%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	10.2%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	188,837	C→T	100%	R316C (CGC→TGC)	PP_0165 →	GGDEF domain‑containing protein
RA	195,559	C→A	27.4%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	8.5%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	8.5%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	43.5%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	22.9%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	26.3%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	27.9%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	29.1%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	9.0%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	17.1%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	7.4%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	13.6%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	6.2%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	5.2%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	11.2%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	19.1%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	20.3%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	17.4%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	14.2%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	198,367	G→C	5.1%	V1291V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	233,545	C→T	100%	G548G (GGC→GGT)	PP_0180 →	cytochrome c family protein
RA	237,450	G→A	5.8%	D111N (GAT→AAT) ‡	algR →	alginate biosynthesis regulatory protein
RA	237,452	T→G	5.9%	D111E (GAT→GAG) ‡	algR →	alginate biosynthesis regulatory protein
RA	237,455	C→A	5.8%	A112A (GCC→GCA)	algR →	alginate biosynthesis regulatory protein
RA	237,457	T→C	5.7%	L113S (TTG→TCG)	algR →	alginate biosynthesis regulatory protein
RA	239,163	Δ1 bp	5.3%	coding (244/768 nt)	hemD →	uroporphyrinogen‑III synthase
RA	239,167	A→T	5.3%	Q83L (CAG→CTG)	hemD →	uroporphyrinogen‑III synthase
RA	239,169:1	+G	5.3%	coding (250/768 nt)	hemD →	uroporphyrinogen‑III synthase
RA	244,819	A→G	7.0%	P165P (CCA→CCG)	algP →	transcriptional regulator AlgP
RA	244,888	A→G	10.1%	K188K (AAA→AAG)	algP →	transcriptional regulator AlgP
RA	253,348	T→C	6.7%	intergenic (‑133/+38)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,356	C→T	7.7%	intergenic (‑141/+30)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,358	A→T	8.0%	intergenic (‑143/+28)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,359	A→T	7.7%	intergenic (‑144/+27)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,361	A→G	7.9%	intergenic (‑146/+25)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	268,744	T→A	6.4%	intergenic (‑75/+25)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	268,746	G→C	6.7%	intergenic (‑77/+23)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	277,234	G→T	5.6%	intergenic (‑67/+30)	PP_0223 ← / ← PP_0224	DszC family monooxygenase/DszC family monooxygenase
RA	278,754	T→A	7.6%	intergenic (‑249/+66)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,587	T→A	14.9%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,588	T→A	14.7%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	289,943	C→A	5.2%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,945	G→C	5.2%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,947	T→G	5.3%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	295,676	T→C	7.6%	intergenic (+23/+119)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,681	T→G	7.0%	intergenic (+28/+114)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,684	A→G	6.3%	intergenic (+31/+111)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,764	C→G	5.5%	intergenic (+111/+31)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	297,351	T→G	5.1%	E218D (GAA→GAC)	gshA ←	glutamate‑‑cysteine ligase
RA	305,154	T→G	5.0%	intergenic (+11/+18)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	305,155	G→C	5.0%	intergenic (+12/+17)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	305,156	C→A	5.3%	intergenic (+13/+16)	hslR → / ← PP_0251	heat shock protein Hsp15/membrane protein
RA	321,742	T→C	6.3%	intergenic (+27/+431)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	321,743	G→A	6.2%	intergenic (+28/+430)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,135	G→A	16.9%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,142	T→C	16.2%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	335,435	C→T	5.2%	intergenic (‑38/+166)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	335,436	A→T	5.2%	intergenic (‑39/+165)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	335,437	A→G	5.1%	intergenic (‑40/+164)	PP_0277 ← / ← PP_5437	hypothetical protein/hypothetical protein
RA	337,812	A→G	22.2%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819:1	+A	22.8%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	A→C	22.1%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	C→G	20.8%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,828	G→T	22.1%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,830	Δ1 bp	21.6%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,839	C→T	24.9%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	343,610	T→A	5.5%	intergenic (‑163/‑77)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,611	G→C	5.5%	intergenic (‑164/‑76)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,612	T→A	5.6%	intergenic (‑165/‑75)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	344,035	A→G	6.3%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,044	Δ1 bp	6.7%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,048:1	+T	6.6%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,105	T→G	13.7%	intergenic (+69/+49)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	358,088	A→G	19.7%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	C→T	18.3%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,093	T→C	18.5%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	G→A	18.3%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,097	A→G	17.2%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,099	C→T	17.6%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	367,370	T→G	5.4%	intergenic (‑53/+21)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	372,650	A→T	5.2%	intergenic (+67/‑112)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,654	A→G	5.3%	intergenic (+71/‑108)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,660	C→G	5.0%	intergenic (+77/‑102)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	385,478	A→C	5.7%	intergenic (+15/+20)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,479	C→G	7.2%	intergenic (+16/+19)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	395,849	C→A	6.9%	intergenic (+28/+176)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,850	A→T	6.7%	intergenic (+29/+175)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	395,851	T→G	6.5%	intergenic (+30/+174)	fdhA → / ← PP_0329	formaldehyde dehydrogenase/hypothetical protein
RA	406,250	G→T	5.0%	intergenic (‑191/+117)	PP_0337 ← / ← aceF	sensory box protein/AceF‑S‑acetyldihydrolipoate
RA	406,252	A→C	5.9%	intergenic (‑193/+115)	PP_0337 ← / ← aceF	sensory box protein/AceF‑S‑acetyldihydrolipoate
RA	414,070	T→A	5.1%	intergenic (+87/‑116)	glnE → / → waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
RA	414,071	T→A	5.1%	intergenic (+88/‑115)	glnE → / → waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
RA	432,996	A→T	9.1%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,997	A→T	9.1%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,998	A→T	9.1%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	444,559	T→G	5.3%	intergenic (+38/‑136)	bioD → / → PP_0367	dethiobiotin synthetase/hypothetical protein
RA	445,108	A→T	16.9%	intergenic (+78/‑210)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,110	T→G	13.1%	intergenic (+80/‑208)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,118	G→A	15.3%	intergenic (+88/‑200)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,123	G→A	11.5%	intergenic (+93/‑195)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,125	C→G	11.4%	intergenic (+95/‑193)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,126	T→C	11.8%	intergenic (+96/‑192)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,127	C→A	10.8%	intergenic (+97/‑191)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	467,101	A→G	6.9%	intergenic (‑31/+22)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	467,104	C→T	5.6%	intergenic (‑34/+19)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	471,069	T→C	7.8%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,070	G→A	7.9%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	476,133	A→T	100%	Q141L (CAG→CTG)	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	478,316	A→T	9.4%	intergenic (+61/+49)	PP_0393 → / ← cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	503,828	Δ1 bp	9.3%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,834	A→T	10.6%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,835	A→T	10.7%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,840:1	+C	10.0%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,852	C→T	5.5%	intergenic (+52/‑99)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	524,339	A→G	7.2%	intergenic (+203/‑613)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,352	G→C	12.6%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,355	G→C	12.7%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,368	C→T	7.2%	intergenic (+232/‑584)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	537,454	T→C	5.7%	noncoding (47/66 nt)	PP_mr07 →	P26 ncRNA
RA	537,461	T→A	6.3%	noncoding (54/66 nt)	PP_mr07 →	P26 ncRNA
RA	537,464	T→A	6.7%	noncoding (57/66 nt)	PP_mr07 →	P26 ncRNA
RA	537,471	G→A	5.0%	noncoding (64/66 nt)	PP_mr07 →	P26 ncRNA
RA	546,005	G→A	6.6%	intergenic (+42/‑31)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,010	G→T	6.1%	intergenic (+47/‑26)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,011	A→T	5.6%	intergenic (+48/‑25)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,012	A→C	6.5%	intergenic (+49/‑24)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,017	T→C	6.2%	intergenic (+54/‑19)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	550,552	C→G	5.7%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	557,335	Δ1 bp	6.9%	intergenic (+75/‑134)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	557,339:1	+A	7.1%	intergenic (+79/‑130)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	564,380:1	+A	6.5%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,385	Δ1 bp	6.5%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	565,993	T→G	5.2%	intergenic (+30/‑134)	katA → / → bfr‑I	catalase/bacterioferritin
RA	566,623	C→T	5.5%	intergenic (+32/+41)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,627	A→G	5.6%	intergenic (+36/+37)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,628	T→A	5.4%	intergenic (+37/+36)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,629	C→T	5.6%	intergenic (+38/+35)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	566,633	A→G	5.7%	intergenic (+42/+31)	bfr‑I → / ← uvrA	bacterioferritin/uvrABC excinuclease protein A
RA	571,217	G→C	5.7%	K62N (AAG→AAC)	ssb →	single‑stranded DNA‑binding protein
RA	571,218	G→C	5.7%	V63L (GTT→CTT)	ssb →	single‑stranded DNA‑binding protein
RA	604,472	C→T	5.5%	P101S (CCA→TCA) ‡	nusB →	transcription antitermination protein
RA	604,473	C→G	5.5%	P101R (CCA→CGA) ‡	nusB →	transcription antitermination protein
RA	604,474	A→G	5.4%	P101P (CCA→CCG) ‡	nusB →	transcription antitermination protein
RA	625,065	C→T	6.5%	intergenic (‑156/+27)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,066	A→T	6.4%	intergenic (‑157/+26)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,067	A→T	6.6%	intergenic (‑158/+25)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,068	A→G	6.6%	intergenic (‑159/+24)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	648,290	A→C	9.4%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,292	A→T	5.7%	intergenic (+58/+33)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,294	G→T	5.7%	intergenic (+60/+31)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	668,074	T→G	16.3%	intergenic (+35/+117)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	668,079	T→G	9.3%	intergenic (+40/+112)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	668,110	T→A	11.7%	intergenic (+71/+81)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	675,590	A→T	5.7%	C38S (TGC→AGC)	PP_0577 ←	hypothetical protein
RA	675,592	C→G	6.0%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,594	A→T	6.0%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	697,103	T→G	6.7%	intergenic (+27/‑724)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,217	T→C	6.4%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	11.1%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,231	C→G	9.9%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,242	G→A	6.4%	intergenic (+166/‑585)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,725	A→G	48.4%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,767	T→G	10.6%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,768	A→T	10.4%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,769	C→A	10.4%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	733,650	A→T	6.2%	intergenic (+21/‑26)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	743,433	G→A	6.0%	intergenic (+109/+165)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,435	A→C	6.4%	intergenic (+111/+163)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,442	T→G	6.5%	intergenic (+118/+156)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,443	T→A	6.2%	intergenic (+119/+155)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,444	C→A	6.4%	intergenic (+120/+154)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	772,181	T→C	7.6%	intergenic (+39/‑160)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,182	T→G	7.6%	intergenic (+40/‑159)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,185	C→A	7.8%	intergenic (+43/‑156)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,186	G→A	7.8%	intergenic (+44/‑155)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	780,559	A→C	6.4%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,561	T→A	7.1%	intergenic (‑88/+34)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,563	G→T	7.7%	intergenic (‑90/+32)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	788,584	C→A	6.3%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	A→T	6.8%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,587	A→T	6.8%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,589	T→G	7.8%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	799,844	T→A	5.7%	D211V (GAC→GTC)	ispB ←	octaprenyl diphosphate synthase
RA	799,850	A→T	5.4%	L209Q (CTG→CAG)	ispB ←	octaprenyl diphosphate synthase
RA	813,203	T→G	7.0%	intergenic (+107/+24)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,204	T→C	6.7%	intergenic (+108/+23)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,205	G→A	6.7%	intergenic (+109/+22)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	813,206	C→A	6.5%	intergenic (+110/+21)	PP_0699 → / ← PP_t70	LysE family transporter/tRNA‑Met
RA	838,718	A→C	11.2%	intergenic (‑18/+41)	rplY ← / ← prs	50S ribosomal protein L25/general stress protein Ctc/ribose‑phosphate pyrophosphokinase
RA	838,719	C→T	8.6%	intergenic (‑19/+40)	rplY ← / ← prs	50S ribosomal protein L25/general stress protein Ctc/ribose‑phosphate pyrophosphokinase
RA	838,720	A→G	9.1%	intergenic (‑20/+39)	rplY ← / ← prs	50S ribosomal protein L25/general stress protein Ctc/ribose‑phosphate pyrophosphokinase
RA	838,721	G→T	8.5%	intergenic (‑21/+38)	rplY ← / ← prs	50S ribosomal protein L25/general stress protein Ctc/ribose‑phosphate pyrophosphokinase
RA	848,506	G→A	5.6%	L23F (CTT→TTT)	PP_0730 ←	hypothetical protein
RA	848,508	C→G	5.7%	R22P (CGG→CCG)	PP_0730 ←	hypothetical protein
RA	848,510	T→C	5.9%	K21K (AAA→AAG)	PP_0730 ←	hypothetical protein
RA	863,383	A→C	12.3%	S172R (AGC→CGC)	hemH →	ferrochelatase
RA	867,936	G→A	9.3%	intergenic (+31/+146)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	867,937	C→T	10.2%	intergenic (+32/+145)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	868,055	A→C	5.5%	intergenic (+150/+27)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	878,088	A→C	5.2%	F32V (TTC→GTC)	hprA ←	glycerate dehydrogenase
RA	878,092	G→T	5.4%	D30E (GAC→GAA)	hprA ←	glycerate dehydrogenase
RA	883,809	T→G	10.8%	intergenic (+44/‑284)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	883,810	C→A	10.0%	intergenic (+45/‑283)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	883,866	A→C	20.2%	intergenic (+101/‑227)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	895,201	G→C	6.0%	intergenic (+38/+26)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,204	T→C	6.4%	intergenic (+41/+23)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,210	G→C	6.2%	intergenic (+47/+17)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,213	G→C	6.8%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→A	6.6%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	944,829	A→T	5.0%	S266T (TCG→ACG)	PP_0806 ←	surface adhesion protein
RA	944,834	G→A	5.2%	P264L (CCC→CTC)	PP_0806 ←	surface adhesion protein
RA	944,837	T→C	5.1%	E263G (GAG→GGG)	PP_0806 ←	surface adhesion protein
RA	955,079	Δ1 bp	9.6%	intergenic (+30/‑283)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,083	T→A	9.7%	intergenic (+34/‑279)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,085:1	+G	9.7%	intergenic (+36/‑277)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	A→G	25.2%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,154	G→A	24.0%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	T→A	23.8%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,156	T→C	26.2%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,158	C→T	25.3%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	961,708	A→G	6.3%	V237A (GTC→GCC)	selD ←	selenide, water dikinase
RA	961,713	G→C	5.9%	H235Q (CAC→CAG)	selD ←	selenide, water dikinase
RA	966,598	A→T	8.5%	L41* (TTG→TAG) ‡	PP_0828 ←	membrane protein
RA	966,599	A→T	8.3%	L41M (TTG→ATG) ‡	PP_0828 ←	membrane protein
RA	968,878	G→T	8.8%	intergenic (‑308/+23)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	968,881	A→C	9.5%	intergenic (‑311/+20)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	994,950	T→A	6.1%	intergenic (+26/+99)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	994,951	T→A	6.2%	intergenic (+27/+98)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	1,011,323:1	+T	100%	intergenic (‑258/+192)	PP_0871 ← / ← SBRG_Ecoli_galM	glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM
RA	1,013,189	C→G	100%	C170S (TGC→TCC)	SBRG_Ecoli_galK ←	SBRG_Ecoli_galK
RA	1,015,820	A→C	100%	intergenic (‑47/‑721)	SBRG_Ecoli_galE ← / → prfC	SBRG_Ecoli_galE/peptide chain release factor 3
RA	1,018,180	A→T	28.0%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,186	C→A	26.7%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,187	A→T	28.5%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,193	G→C	31.8%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,194	G→C	32.0%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,200	A→T	35.9%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,201	T→G	39.1%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,207	A→T	32.7%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,018,243	G→A	5.4%	intergenic (+119/+12)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,030,259	A→T	8.8%	intergenic (‑161/+68)	opdP ← / ← dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
RA	1,042,748	T→A	7.8%	intergenic (+41/+75)	PP_0896 → / ← PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
RA	1,065,048	Δ1 bp	6.2%	coding (242/891 nt)	iciA →	chromosome initiation inhibitor
RA	1,065,054:1	+T	6.3%	coding (248/891 nt)	iciA →	chromosome initiation inhibitor
RA	1,071,287	T→C	5.7%	S89G (AGC→GGC)	PP_0924 ←	hypothetical protein
RA	1,071,290	T→C	5.3%	S88G (AGC→GGC)	PP_0924 ←	hypothetical protein
RA	1,071,291	G→A	5.3%	A87A (GCC→GCT)	PP_0924 ←	hypothetical protein
RA	1,071,294	G→A	5.2%	A86A (GCC→GCT)	PP_0924 ←	hypothetical protein
RA	1,075,214	G→C	12.4%	intergenic (+62/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,075,217	G→C	12.6%	intergenic (+65/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,119,900	G→A	5.3%	intergenic (‑140/+39)	rlmF ← / ← valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
RA	1,128,892	T→A	5.3%	intergenic (‑138/+83)	PP_mr13 ← / ← gcvT‑I	cspA regulatory region/aminomethyltransferase
RA	1,128,897	T→A	5.3%	intergenic (‑143/+78)	PP_mr13 ← / ← gcvT‑I	cspA regulatory region/aminomethyltransferase
RA	1,131,569	A→T	7.3%	intergenic (‑69/+81)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,135,093	G→T	5.3%	intergenic (‑193/+111)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,135,094	C→G	5.7%	intergenic (‑194/+110)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,135,095	A→C	5.7%	intergenic (‑195/+109)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,135,147	A→T	6.4%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,150,388	C→T	6.1%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,395	G→A	9.0%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,396	T→C	9.0%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,150,403	A→G	7.8%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,153,751	A→C	5.3%	L150R (CTT→CGT)	PP_1007 ←	transmembrane sensor
RA	1,161,305	G→C	10.1%	intergenic (+53/‑163)	PP_1013 → / → yihS	sensor histidine kinase/aldose‑ketose isomerase
RA	1,163,732	A→G	90.5%	N304D (AAC→GAC)	gtsA →	mannose/glucose ABC transporter substrate‑binding protein
RA	1,165,540	C→T	100%	L133F (CTC→TTC)	gtsC →	mannose/glucose ABC transporter permease
RA	1,165,856	C→T	5.4%	T238I (ACC→ATC)	gtsC →	mannose/glucose ABC transporter permease
RA	1,168,596	G→T	100%	intergenic (+65/‑53)	oprB‑I → / → yeaD	carbohydrate‑selective porin/glucose‑6‑phosphate 1‑epimerase
RA	1,183,706	T→A	5.2%	intergenic (+56/+38)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,189,516	A→T	6.8%	intergenic (‑177/‑235)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,523	A→G	8.8%	intergenic (‑184/‑228)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,540	G→C	14.5%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,189,543	G→C	15.3%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,206,908	A→C	5.6%	Q119H (CAA→CAC)	xcpW →	type II secretion pathway protein XcpW
RA	1,206,967	A→C	25.8%	Q139P (CAG→CCG)	xcpW →	type II secretion pathway protein XcpW
RA	1,207,809	A→C	5.8%	Q228P (CAG→CCG)	xcpY →	type II secretion pathway protein XcpY
RA	1,207,812	G→T	5.3%	R229L (CGG→CTG)	xcpY →	type II secretion pathway protein XcpY
RA	1,215,783	T→A	7.2%	intergenic (+18/+19)	ytnA → / ← PP_1060	amino acid permease YtnA/glutamate synthase large subunit
RA	1,215,784	T→A	7.2%	intergenic (+19/+18)	ytnA → / ← PP_1060	amino acid permease YtnA/glutamate synthase large subunit
RA	1,229,585	C→T	5.5%	W16* (TGG→TGA) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,229,587	A→G	5.1%	W16R (TGG→CGG) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,238,722	A→C	6.9%	intergenic (‑83/+19)	glpR ← / ← glpK	DNA‑binding transcriptional repressor GlpR/glycerol kinase
RA	1,238,723	T→A	7.0%	intergenic (‑84/+18)	glpR ← / ← glpK	DNA‑binding transcriptional repressor GlpR/glycerol kinase
RA	1,238,724	G→T	7.1%	intergenic (‑85/+17)	glpR ← / ← glpK	DNA‑binding transcriptional repressor GlpR/glycerol kinase
RA	1,246,917:1	+T	6.7%	intergenic (+27/+31)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,246,922	Δ1 bp	6.6%	intergenic (+32/+26)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,249,323	A→G	6.2%	G39G (GGT→GGC) ‡	rnt ←	ribonuclease T
RA	1,249,324	C→G	6.2%	G39A (GGT→GCT) ‡	rnt ←	ribonuclease T
RA	1,249,325	C→T	6.2%	G39S (GGT→AGT) ‡	rnt ←	ribonuclease T
RA	1,250,285	G→C	5.0%	A66A (GCC→GCG)	pyrC ←	dihydroorotase
RA	1,253,168	C→A	9.6%	intergenic (+26/+42)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,253,169	T→C	9.6%	intergenic (+27/+41)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,253,172	G→A	9.7%	intergenic (+30/+38)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,253,173	T→G	10.1%	intergenic (+31/+37)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,254,704	A→T	6.7%	intergenic (+22/+49)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,254,706	C→G	6.8%	intergenic (+24/+47)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,254,708	A→T	7.3%	intergenic (+26/+45)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,258,384	G→C	5.1%	intergenic (‑75/+32)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,258,386	A→T	5.3%	intergenic (‑77/+30)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,258,388	G→C	5.1%	intergenic (‑79/+28)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,261,836	A→T	6.6%	noncoding (434/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,261,837	G→T	6.8%	noncoding (433/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,261,838	A→C	6.7%	noncoding (432/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,261,839	A→T	7.0%	noncoding (431/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,280,039	G→C	6.9%	intergenic (‑281/+31)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,280,042	G→C	6.6%	intergenic (‑284/+28)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,289,982	T→C	5.3%	G86G (GGT→GGC)	PP_1122 →	OmpA family protein
RA	1,289,983	G→A	5.3%	G87S (GGT→AGT) ‡	PP_1122 →	OmpA family protein
RA	1,289,984	G→A	5.3%	G87D (GGT→GAT) ‡	PP_1122 →	OmpA family protein
RA	1,299,069	C→T	5.3%	intergenic (+15/+25)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,070	A→T	5.0%	intergenic (+16/+24)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,071	A→G	5.0%	intergenic (+17/+23)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,968	Δ1 bp	8.6%	intergenic (+29/+41)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,973	T→A	9.2%	intergenic (+34/+36)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,976	T→A	9.4%	intergenic (+37/+33)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,299,980:1	+T	7.3%	intergenic (+41/+29)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,316,697	G→A	7.5%	intergenic (‑210/+68)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,316,714	T→A	5.9%	intergenic (‑227/+51)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,316,715	T→A	6.3%	intergenic (‑228/+50)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,332,076	C→T	48.7%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,347,206	C→T	6.5%	intergenic (‑35/+20)	PP_1166 ← / ← PP_1167	DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM
RA	1,347,207	A→T	6.8%	intergenic (‑36/+19)	PP_1166 ← / ← PP_1167	DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM
RA	1,347,208	A→G	6.3%	intergenic (‑37/+18)	PP_1166 ← / ← PP_1167	DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM
RA	1,355,456	T→A	6.6%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,355,457	T→A	6.6%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,359,220	G→T	5.2%	S371Y (TCC→TAC)	nrdA ←	ribonucleoside‑diphosphate reductase subunit alpha
RA	1,360,974	G→C	5.7%	intergenic (+286/‑106)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,979	T→C	6.0%	intergenic (+291/‑101)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,985	A→G	6.9%	intergenic (+297/‑95)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,990	C→G	7.1%	intergenic (+302/‑90)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,995	G→C	6.6%	intergenic (+307/‑85)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,360,998	C→T	6.6%	intergenic (+310/‑82)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,361,004	G→A	6.1%	intergenic (+316/‑76)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,361,360	G→C	11.0%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,371,184	T→C	5.1%	E157E (GAA→GAG)	PP_1191 ←	S4 domain‑containing protein
RA	1,373,151	A→G	5.4%	intergenic (+25/‑158)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,373,152	G→T	5.3%	intergenic (+26/‑157)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,373,154	G→C	5.4%	intergenic (+28/‑155)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,373,156	A→C	5.3%	intergenic (+30/‑153)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,373,157	C→T	5.2%	intergenic (+31/‑152)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,381,276	A→T	10.1%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,381,277	G→C	11.2%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,381,278	A→T	10.5%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,385,677	G→T	6.1%	intergenic (‑110/+25)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,385,678	T→A	6.1%	intergenic (‑111/+24)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,385,679	T→A	5.5%	intergenic (‑112/+23)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,385,680	A→C	5.2%	intergenic (‑113/+22)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,388,209	A→T	8.1%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein
RA	1,397,870	T→C	12.4%	intergenic (+85/‑101)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,872	A→G	12.5%	intergenic (+87/‑99)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,874	G→A	13.6%	intergenic (+89/‑97)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,876:1	+A	11.4%	intergenic (+91/‑95)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,882	C→G	11.8%	intergenic (+97/‑89)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,888	Δ1 bp	11.9%	intergenic (+103/‑83)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,891	T→C	11.3%	intergenic (+106/‑80)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,893	C→T	11.9%	intergenic (+108/‑78)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,895	G→A	12.1%	intergenic (+110/‑76)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,397,914	T→A	6.3%	intergenic (+129/‑57)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,405,827	C→A	6.5%	intergenic (+35/‑134)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,405,829	A→T	6.1%	intergenic (+37/‑132)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,405,831	T→G	6.2%	intergenic (+39/‑130)	ybgF → / → queE	TolQRA transport system periplasmic protein/7‑carboxy‑7‑deazaguanine synthase
RA	1,408,545	G→A	11.0%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,408,546	T→C	10.3%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,418,388	T→A	5.2%	N155I (AAC→ATC)	PP_1235 ←	AhpC/TSA family protein
RA	1,421,817	G→A	5.1%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,421,823	T→A	5.5%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,421,829	T→C	5.6%	L41P (CTG→CCG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,440,771	A→T	8.5%	L50Q (CTG→CAG)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,440,778	A→T	8.6%	C48S (TGC→AGC)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,448,097	T→G	12.0%	intergenic (‑79/+97)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,448,115	T→G	10.7%	intergenic (‑97/+79)	ghrB ← / ← PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
RA	1,463,077	C→A	5.1%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,467,980	A→T	7.4%	intergenic (‑100/+42)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,467,981	A→T	7.3%	intergenic (‑101/+41)	algI ← / ← algL	alginate O‑acetylase AlgI/alginate lyase
RA	1,469,152	G→A	5.5%	T474T (ACC→ACT) ‡	algX ←	alginate biosynthesis protein AlgX
RA	1,469,154	T→A	7.0%	T474S (ACC→TCC) ‡	algX ←	alginate biosynthesis protein AlgX
RA	1,469,156	T→G	8.1%	Q473P (CAG→CCG)	algX ←	alginate biosynthesis protein AlgX
RA	1,479,951	T→G	13.0%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,479,952	C→A	12.6%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,488,834	C→G	5.1%	intergenic (+23/‑45)	yhdW → / → yhdX	amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease
RA	1,492,000	T→A	5.8%	intergenic (+60/+70)	yhdZ → / ← degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
RA	1,500,606	G→A	6.2%	A27T (GCC→ACC)	mdeA →	methionine gamma‑lyase
RA	1,500,613	T→C	5.2%	V29A (GTG→GCG)	mdeA →	methionine gamma‑lyase
RA	1,501,771	T→G	6.2%	intergenic (+47/+25)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,501,772	T→C	5.2%	intergenic (+48/+24)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,501,773	G→A	5.2%	intergenic (+49/+23)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,501,774	C→A	5.3%	intergenic (+50/+22)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,502,790	T→G	6.2%	M141R (ATG→AGG)	PP_1310 →	hypothetical protein
RA	1,509,025	T→A	8.9%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,509,026	T→A	8.6%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,511,881	A→G	9.1%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,885	G→A	9.6%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,888	T→C	9.5%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,511,892	C→T	9.0%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,513,036	G→A	5.2%	intergenic (+17/+45)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,037	G→T	5.0%	intergenic (+18/+44)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,038	A→C	5.8%	intergenic (+19/+43)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,513,039	T→C	5.8%	intergenic (+20/+42)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
MC JC	1,515,769	Δ33 bp	100%	pseudogene (757‑789/1851 nt)	PP_1325 ←	putative lipoprotein
RA	1,525,982	T→A	5.0%	L83* (TTG→TAG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,525,988	C→G	6.1%	T85R (ACG→AGG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,531,571	T→A	7.5%	I256N (ATT→AAT)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,531,580	A→C	5.7%	E259A (GAA→GCA)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,539,880	T→C	5.9%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,884	C→T	6.0%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,889	A→G	5.7%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,893	G→A	5.9%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,899	A→G	5.1%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,549,480	C→A	35.0%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,483	G→C	32.6%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,485	C→G	32.5%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,490	C→G	32.5%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,492	G→C	33.8%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,495	T→G	33.6%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,510	T→A	5.0%	intergenic (+78/+36)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,554,886	A→T	6.0%	I99F (ATC→TTC)	groL →	chaperonin GroEL
RA	1,554,891	C→T	5.3%	V100V (GTC→GTT)	groL →	chaperonin GroEL
RA	1,554,892	A→G	5.4%	N101D (AAC→GAC)	groL →	chaperonin GroEL
RA	1,554,897	A→T	5.1%	E102D (GAA→GAT)	groL →	chaperonin GroEL
RA	1,556,273	G→T	6.9%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,556,276	A→C	6.8%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,560,379	A→C	9.7%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,560,380	T→A	7.5%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,560,381	G→T	8.0%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,580,181	A→C	6.2%	intergenic (‑176/+34)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,580,189	G→A	8.2%	intergenic (‑184/+26)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,580,191	T→A	8.2%	intergenic (‑186/+24)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,580,192	T→A	8.1%	intergenic (‑187/+23)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,580,194	T→C	8.1%	intergenic (‑189/+21)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,581,747	G→C	6.1%	intergenic (‑276/+37)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,581,748	A→T	6.1%	intergenic (‑277/+36)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,581,751	A→T	6.1%	intergenic (‑280/+33)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,581,752	G→C	6.2%	intergenic (‑281/+32)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,596,973	C→A	12.7%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,596,978	T→G	13.2%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,599,052	T→C	5.6%	intergenic (‑259/+42)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,599,057	G→T	5.4%	intergenic (‑264/+37)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,599,058	C→G	5.6%	intergenic (‑265/+36)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,599,059	A→C	5.9%	intergenic (‑266/+35)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,599,064	G→A	5.8%	intergenic (‑271/+30)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,603,804	C→A	5.4%	intergenic (‑52/+79)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,819	A→G	7.4%	intergenic (‑67/+64)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,822	C→G	6.7%	intergenic (‑70/+61)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,823	T→C	6.7%	intergenic (‑71/+60)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,824	G→A	6.7%	intergenic (‑72/+59)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,825	C→G	6.6%	intergenic (‑73/+58)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,603,828	C→T	6.8%	intergenic (‑76/+55)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,630,198	G→T	9.1%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,630,199	A→C	14.8%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,637,084	C→T	6.8%	P283S (CCT→TCT) ‡	lepA →	elongation factor 4
RA	1,637,086	T→A	6.5%	P283P (CCT→CCA) ‡	lepA →	elongation factor 4
RA	1,637,088	A→G	6.6%	E284G (GAG→GGG)	lepA →	elongation factor 4
RA	1,642,298	A→G	5.5%	intergenic (+16/+50)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,300	C→T	5.6%	intergenic (+18/+48)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,306	T→C	7.6%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,316	A→T	11.1%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,317	A→T	11.1%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,644,556	A→G	11.4%	intergenic (‑155/‑156)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,566	C→T	13.4%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,567	G→T	13.9%	intergenic (‑166/‑145)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,571	G→A	12.1%	intergenic (‑170/‑141)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,572	T→C	12.0%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,576	A→C	12.3%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,577	A→G	12.1%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,644,587	C→T	13.4%	intergenic (‑186/‑125)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,647,255	G→A	10.0%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,262	G→C	10.6%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,268	G→C	10.6%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,269	C→G	10.5%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,270	G→C	10.5%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,276	G→C	11.1%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,283	T→C	8.3%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,292	G→A	6.5%	intergenic (‑129/+23)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,294	C→T	6.6%	intergenic (‑131/+21)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,652,918	G→A	90.1%	Y265Y (TAC→TAT)	oprB‑II ←	carbohydrate‑selective porin
RA	1,666,468	C→A	5.7%	A50D (GCC→GAC)	PP_1456 →	membrane protein
RA	1,666,471	T→A	5.6%	L51Q (CTG→CAG)	PP_1456 →	membrane protein
RA	1,666,474	T→G	5.6%	V52G (GTC→GGC)	PP_1456 →	membrane protein
RA	1,675,617	T→C	6.5%	intergenic (+49/‑46)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,675,618	T→G	6.4%	intergenic (+50/‑45)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,675,619	C→A	6.3%	intergenic (+51/‑44)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,675,620	G→A	6.4%	intergenic (+52/‑43)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,687,926	A→G	6.4%	Q485R (CAG→CGG)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,688,239	C→G	9.6%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,688,242	C→G	8.5%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,696,774	C→A	10.3%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,696,777	T→G	11.1%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,698,783	C→G	5.6%	R87R (CGC→CGG)	PP_1489 →	CheW domain‑containing protein
RA	1,700,011	C→G	6.0%	A329G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,700,014	G→A	5.9%	R330Q (CGG→CAG)	wspC →	biofilm formation methyltransferase WspC
RA	1,700,017	T→C	5.9%	L331P (CTG→CCG)	wspC →	biofilm formation methyltransferase WspC
RA	1,700,020	C→G	5.8%	A332G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,708,239	A→G	32.6%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,708,241	G→C	30.9%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,708,243	C→T	32.7%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,712,218	G→C	7.7%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,221	G→C	7.5%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,279:1	+A	5.2%	intergenic (+106/+36)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,284	Δ1 bp	5.1%	intergenic (+111/+31)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,717,942	T→A	6.4%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,717,943	T→A	6.6%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,755,724	C→G	5.6%	A31G (GCC→GGC)	PP_1551 →	replication protein O
RA	1,760,821	C→G	5.6%	intergenic (+22/‑39)	PP_1559 → / → PP_1560	holin/hypothetical protein
RA	1,760,822	C→G	5.6%	intergenic (+23/‑38)	PP_1559 → / → PP_1560	holin/hypothetical protein
RA	1,779,410	C→A	6.9%	V534V (GTC→GTA)	PP_1581 →	BNR domain‑containing protein
RA	1,779,411	A→C	7.0%	S535R (AGT→CGT) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,779,412	G→T	7.0%	S535I (AGT→ATT) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,779,413	T→G	7.0%	S535R (AGT→AGG) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,785,057	G→A	5.1%	intergenic (+25/+81)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
JC	1,785,058	Δ62 bp	13.6%	intergenic (+26/+19)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,785,120	T→C	6.2%	intergenic (+88/+18)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,791,013	T→A	5.5%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,791,014	T→A	5.1%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,791,015	T→A	5.0%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,809,639	T→G	5.5%	intergenic (+53/‑119)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,809,640	T→A	5.3%	intergenic (+54/‑118)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,809,641	C→A	5.0%	intergenic (+55/‑117)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,813,071	T→A	5.6%	V44D (GTT→GAT)	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,813,079	A→C	6.9%	K47Q (AAG→CAG) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,813,080	A→T	7.4%	K47M (AAG→ATG) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,813,081	G→T	6.8%	K47N (AAG→AAT) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,815,326	T→G	14.2%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,815,327	C→A	10.8%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,819,512	G→A	5.0%	intergenic (+21/‑92)	frmC → / → ispF	S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase/2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
RA	1,825,970	2 bp→CT	100%	coding (742‑743/1422 nt)	PP_1624 →	group II intron‑encoding maturase
RA	1,830,082	G→C	5.3%	R55G (CGC→GGC)	mutS ←	DNA mismatch repair protein MutS
RA	1,830,083	G→C	5.6%	A54A (GCC→GCG)	mutS ←	DNA mismatch repair protein MutS
RA	1,856,513	A→G	100%	D203G (GAT→GGT)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,897,517	C→G	5.6%	intergenic (+36/‑59)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,897,518	T→C	5.6%	intergenic (+37/‑58)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,897,519	G→A	5.6%	intergenic (+38/‑57)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,897,520	C→G	5.6%	intergenic (+39/‑56)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,902,194	G→T	7.2%	intergenic (‑56/+88)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,198	T→A	7.0%	intergenic (‑60/+84)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,902,202	A→C	6.8%	intergenic (‑64/+80)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,904,269	A→G	6.7%	intergenic (+348/‑172)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,911,732	G→C	7.4%	intergenic (+81/+47)	nirD → / ← PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,911,733	A→C	5.6%	intergenic (+82/+46)	nirD → / ← PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,911,767	A→G	7.9%	intergenic (+116/+12)	nirD → / ← PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,923,247	C→G	5.5%	intergenic (‑32/+86)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,923,248	T→C	5.5%	intergenic (‑33/+85)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,923,249	G→A	5.5%	intergenic (‑34/+84)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,923,250	C→G	5.6%	intergenic (‑35/+83)	PP_1718 ← / ← prc	EAL domain‑containing diguanylate phosphodiesterase/tail‑specific protease Prc
RA	1,926,540	T→A	11.4%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,926,541	T→A	12.7%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,930,711	T→A	7.7%	intergenic (‑19/+81)	PP_1725 ← / ← PP_1726	hypothetical protein/ABC transporter substrate‑binding protein
RA	1,931,504	T→G	5.2%	D118A (GAC→GCC) ‡	PP_1726 ←	ABC transporter substrate‑binding protein
RA	1,931,505	C→A	5.2%	D118Y (GAC→TAC) ‡	PP_1726 ←	ABC transporter substrate‑binding protein
RA	1,937,614	T→G	12.0%	intergenic (‑90/+61)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,940,035	T→G	5.1%	L103R (CTG→CGG)	htrB →	lipid A biosynthesis lauroyl acyltransferase
RA	1,944,112	A→C	5.2%	intergenic (‑65/‑114)	PP_1738 ← / → PP_1739	hypothetical protein/membrane protein
RA	1,944,113	G→T	5.1%	intergenic (‑66/‑113)	PP_1738 ← / → PP_1739	hypothetical protein/membrane protein
RA	1,947,358	T→A	6.8%	intergenic (+44/‑161)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,947,361	T→C	6.9%	intergenic (+47/‑158)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,947,364	G→A	6.1%	intergenic (+50/‑155)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,947,367	T→A	5.7%	intergenic (+53/‑152)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,952,787	C→G	11.5%	intergenic (‑56/+114)	PP_1748 ← / ← PP_1749	hypothetical protein/acetyltransferase
RA	1,952,799	G→C	9.3%	intergenic (‑68/+102)	PP_1748 ← / ← PP_1749	hypothetical protein/acetyltransferase
RA	1,958,395	G→A	5.1%	R46R (CGC→CGT)	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,958,398	G→C	5.1%	T45T (ACC→ACG) ‡	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,958,400	T→C	5.0%	T45A (ACC→GCC) ‡	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,960,201	T→A	9.2%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,960,202	T→A	9.4%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,965,091	T→A	5.5%	intergenic (+50/‑78)	bolA → / → PP_1758	DNA‑binding transcriptional dual regulator/rhodanese‑like domain‑containing sulfurtransferase
RA	1,972,170	A→C	9.5%	intergenic (+48/+71)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,189	A→G	10.4%	intergenic (+67/+52)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,972,198	T→A	9.1%	intergenic (+76/+43)	PP_1762 → / ← yciK	hypothetical protein/putative oxidoreductase
RA	1,986,084	T→G	8.6%	intergenic (+31/‑269)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,986,085	C→A	7.4%	intergenic (+32/‑268)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,998,594	G→T	10.0%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,998,595	C→G	9.8%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,998,596	A→C	9.7%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,002,963	G→T	5.2%	H138N (CAT→AAT)	rfbD ←	dTDP‑4‑dehydrorhamnose reductase
RA	2,032,444	T→G	6.9%	L81R (CTG→CGG)	wbpL →	glycosyl transferase WbpL
RA	2,036,362	T→G	5.9%	intergenic (+43/+32)	PP_1806 → / ← kdsA‑II	arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	2,036,364	T→A	5.7%	intergenic (+45/+30)	PP_1806 → / ← kdsA‑II	arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	2,036,366	C→A	5.9%	intergenic (+47/+28)	PP_1806 → / ← kdsA‑II	arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	2,044,006	C→T	5.2%	D156N (GAC→AAC)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,054,295	G→T	6.5%	intergenic (‑32/+28)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,054,296	A→C	6.6%	intergenic (‑33/+27)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,061,044	C→A	6.7%	intergenic (+101/‑42)	aroC → / → PP_1831	chorismate synthase/membrane protein
RA	2,068,177	C→G	13.8%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,184	C→A	15.2%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,185	A→C	20.4%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,186	T→C	14.7%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,193	G→A	17.2%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,197	T→C	18.7%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,200	G→A	19.4%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,204	T→C	17.6%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,211	G→A	11.5%	intergenic (+76/‑131)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,212	G→T	11.7%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,213	T→G	13.2%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,220	C→G	10.8%	intergenic (+85/‑122)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,073,143	A→T	9.1%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,073,144	A→T	9.3%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,076,188	A→T	6.2%	intergenic (+148/+79)	PP_1846 → / ← PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
RA	2,083,278	A→C	11.1%	intergenic (+71/+44)	PP_1853 → / ← PP_1854	LysR family transcriptional regulator/hypothetical protein
RA	2,086,104	G→T	5.1%	intergenic (+30/+85)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,086,105	C→T	5.4%	intergenic (+31/+84)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,086,106	A→G	5.4%	intergenic (+32/+83)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,086,107	A→C	6.0%	intergenic (+33/+82)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,092,325	C→G	8.9%	intergenic (+146/+772)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,326	C→G	9.1%	intergenic (+147/+771)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,097,372	G→A	6.8%	intergenic (+26/+65)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,097,374	T→C	6.9%	intergenic (+28/+63)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,097,377	G→A	6.6%	intergenic (+31/+60)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,097,379	T→C	6.9%	intergenic (+33/+58)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,099,024	C→T	7.2%	intergenic (+68/+30)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,099,025	G→T	7.0%	intergenic (+69/+29)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,099,026	A→C	6.9%	intergenic (+70/+28)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,099,027	A→G	6.9%	intergenic (+71/+27)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,106,378	G→C	5.3%	T135T (ACG→ACC)	msrC →	free methionine‑(R)‑sulfoxide reductase
RA	2,109,894	G→C	6.4%	intergenic (‑19/+22)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,109,895	C→A	6.4%	intergenic (‑20/+21)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,109,898	T→G	6.4%	intergenic (‑23/+18)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,109,899	G→C	6.0%	intergenic (‑24/+17)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,144,620	A→T	5.3%	R165R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,144,623	A→T	5.3%	R164R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,144,629	C→A	5.4%	Q162H (CAG→CAT)	PP_5481 ←	hypothetical protein
RA	2,147,432	A→C	10.0%	R726R (AGG→CGG)	PP_1897 →	DNA internalization‑related competence protein ComEC/Rec2
RA	2,149,360	G→C	6.5%	Q239H (CAG→CAC)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,149,364	C→A	6.3%	L241M (CTG→ATG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,149,369	T→G	6.3%	H242Q (CAT→CAG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,149,373	G→C	6.3%	V244L (GTG→CTG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,161,635	T→A	5.7%	intergenic (+74/‑54)	plsX → / → fabD	phosphate acyltransferase/malonyl‑CoA‑ACP transacylase
RA	2,161,640	T→C	5.9%	intergenic (+79/‑49)	plsX → / → fabD	phosphate acyltransferase/malonyl‑CoA‑ACP transacylase
RA	2,161,641	C→G	5.9%	intergenic (+80/‑48)	plsX → / → fabD	phosphate acyltransferase/malonyl‑CoA‑ACP transacylase
RA	2,161,642	G→A	6.1%	intergenic (+81/‑47)	plsX → / → fabD	phosphate acyltransferase/malonyl‑CoA‑ACP transacylase
RA	2,161,647	T→A	5.7%	intergenic (+86/‑42)	plsX → / → fabD	phosphate acyltransferase/malonyl‑CoA‑ACP transacylase
RA	2,176,801	A→C	5.6%	intergenic (+344/+59)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,209,475	A→T	100%	N387I (AAC→ATC)	PP_1948 →	benzaldehyde dehydrogenase
RA	2,242,670	C→G	5.1%	A302A (GCG→GCC) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,242,671	G→C	5.1%	A302G (GCG→GGG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,242,672	C→G	5.1%	A302P (GCG→CCG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,243,135	C→G	5.1%	M147I (ATG→ATC) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,243,136	A→T	5.2%	M147K (ATG→AAG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,246,292	A→G	7.7%	intergenic (+47/‑234)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,295	G→A	6.7%	intergenic (+50/‑231)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,296	G→T	13.9%	intergenic (+51/‑230)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,298	A→G	9.1%	intergenic (+53/‑228)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,305	A→C	7.6%	intergenic (+60/‑221)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,309	C→T	7.0%	intergenic (+64/‑217)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,246,318	C→G	7.0%	intergenic (+73/‑208)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,251,233	C→T	5.6%	intergenic (+30/+61)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,251,234	A→G	5.7%	intergenic (+31/+60)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,274,242	G→A	5.5%	G18D (GGT→GAT) ‡	metZ →	O‑succinylhomoserine sulfhydrylase
RA	2,274,243	T→A	5.7%	G18G (GGT→GGA) ‡	metZ →	O‑succinylhomoserine sulfhydrylase
RA	2,274,244	T→A	5.6%	F19I (TTC→ATC) ‡	metZ →	O‑succinylhomoserine sulfhydrylase
RA	2,274,245	T→C	5.6%	F19S (TTC→TCC) ‡	metZ →	O‑succinylhomoserine sulfhydrylase
RA	2,278,054	C→G	12.1%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,058	A→T	13.6%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,062	C→G	13.3%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,072	C→T	5.2%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,278,859	T→G	5.9%	Q167P (CAG→CCG)	PP_2004 ←	AraC family transcriptional regulator
RA	2,278,865	G→C	6.5%	P165R (CCG→CGG) ‡	PP_2004 ←	AraC family transcriptional regulator
RA	2,278,866	G→C	5.9%	P165A (CCG→GCG) ‡	PP_2004 ←	AraC family transcriptional regulator
RA	2,278,872	C→A	6.5%	G163C (GGC→TGC)	PP_2004 ←	AraC family transcriptional regulator
RA	2,287,762	T→G	30.8%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,766	G→C	28.0%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,767	G→C	28.0%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,771	C→A	28.3%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,293,757	G→A	100%	D350N (GAC→AAC)	pepN →	aminopeptidase N
RA	2,300,766	T→G	5.5%	intergenic (+20/+113)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,300,821	T→G	8.0%	intergenic (+75/+58)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,305,400	A→C	5.7%	W317G (TGG→GGG)	sbcD ←	exonuclease subunit SbcD
RA	2,305,401	G→T	5.4%	P316P (CCC→CCA)	sbcD ←	exonuclease subunit SbcD
RA	2,315,087	A→C	6.7%	intergenic (‑74/‑155)	PP_2032 ← / → PP_2033	ATPase/hypothetical protein
RA	2,341,489	C→T	7.4%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,341,490	A→T	7.1%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,341,491	A→G	7.5%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,347,094	C→A	5.6%	intergenic (+17/‑47)	yraO → / → PP_2058	transporter YraO/porin
RA	2,347,095	T→G	5.6%	intergenic (+18/‑46)	yraO → / → PP_2058	transporter YraO/porin
RA	2,365,368	A→T	13.6%	S261T (TCA→ACA)	PP_2075 ←	membrane protein
RA	2,377,073	G→T	7.5%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,074	T→C	7.5%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,075	G→A	7.3%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,377,076	A→C	7.3%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,384,391	C→A	100%	Q227K (CAA→AAA)	cmpX →	protein CmpX
RA	2,386,394	T→G	12.3%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,386,395	C→A	11.0%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,392,183	C→G	6.6%	intergenic (‑88/‑50)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,392,185	C→G	6.6%	intergenic (‑90/‑48)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,392,187	C→G	6.4%	intergenic (‑92/‑46)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,400,575	G→C	5.4%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,400,577	A→T	5.4%	intergenic (‑193/+50)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,400,579	G→C	5.7%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,407,303	A→T	5.5%	L19Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,413,652	C→G	7.3%	intergenic (‑96/+46)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,413,653	C→G	7.0%	intergenic (‑97/+45)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,413,654	C→G	7.0%	intergenic (‑98/+44)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,413,655	C→G	7.1%	intergenic (‑99/+43)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,417,896	G→C	6.5%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,417,897	G→C	6.5%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,426,560	G→A	5.1%	G127R (GGG→AGG)	moaB‑I →	molybdenum cofactor biosynthesis protein B
RA	2,426,564	T→C	5.0%	L128P (CTG→CCG)	moaB‑I →	molybdenum cofactor biosynthesis protein B
RA	2,430,856	T→G	9.2%	E33D (GAA→GAC)	PP_2126 ←	LuxR family transcriptional regulator
RA	2,449,407	A→C	10.9%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,449,411	G→T	10.6%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,449,412	A→C	10.8%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,449,416	G→T	10.8%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,461,852	A→G	9.1%	intergenic (+111/‑70)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,853	T→G	7.0%	intergenic (+112/‑69)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,854	T→C	5.2%	intergenic (+113/‑68)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,856	T→G	7.0%	intergenic (+115/‑66)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,859	C→A	5.5%	intergenic (+118/‑63)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,861	G→A	5.5%	intergenic (+120/‑61)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,862	C→A	5.5%	intergenic (+121/‑60)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,863	C→T	5.4%	intergenic (+122/‑59)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,466,727	A→T	5.3%	Q245L (CAG→CTG)	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,467,922	T→A	5.7%	L229Q (CTG→CAG)	lolD →	lipoprotein‑releasing system ATP‑binding protein LolD
RA	2,473,253	G→C	5.3%	intergenic (‑25/+98)	PP_2161 ← / ← PP_2162	hypothetical protein/phosphonoacetaldehyde phosphonohydrolase‑like protein
RA	2,479,133	C→T	16.2%	intergenic (‑46/+134)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,135	T→C	20.7%	intergenic (‑48/+132)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,140	T→C	19.8%	intergenic (‑53/+127)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,141	C→T	18.4%	intergenic (‑54/+126)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,146	A→G	16.3%	intergenic (‑59/+121)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,147	G→A	18.3%	intergenic (‑60/+120)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,152	G→A	13.1%	intergenic (‑65/+115)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,479,154	A→G	13.6%	intergenic (‑67/+113)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,480,272	A→G	6.8%	intergenic (‑79/+78)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,480,275	C→A	6.7%	intergenic (‑82/+75)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,480,278	T→G	6.2%	intergenic (‑85/+72)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,480,281	C→T	6.2%	intergenic (‑88/+69)	tal ← / ← dusA	transaldolase/tRNA dihydrouridine synthase DusA
RA	2,483,832	G→A	7.2%	intergenic (+93/+352)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,483,833	C→A	7.2%	intergenic (+94/+351)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,483,837	G→C	7.6%	intergenic (+98/+347)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,483,841	T→G	7.6%	intergenic (+102/+343)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,483,842	T→C	7.4%	intergenic (+103/+342)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,491,173	C→G	5.3%	A258G (GCC→GGC)	spuC‑I →	polyamine:pyruvate transaminase
RA	2,503,207	A→G	5.2%	H39R (CAC→CGC) ‡	PP_2193 →	ferric siderophore receptor
RA	2,503,208	C→T	5.1%	H39H (CAC→CAT) ‡	PP_2193 →	ferric siderophore receptor
RA	2,513,023	T→A	6.1%	Q48L (CAG→CTG)	PP_2201 ←	alpha/beta family hydrolase
RA	2,513,781	A→T	6.9%	M109K (ATG→AAG)	PP_2203 ←	hypothetical protein
RA	2,534,020	G→C	5.3%	intergenic (+155/‑252)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,534,021	G→C	5.5%	intergenic (+156/‑251)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,545,801	T→A	10.9%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,545,802	G→C	10.4%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,545,803	T→A	10.1%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,606,072	T→C	6.0%	L186P (CTG→CCG)	PP_2279 →	head‑to‑tail joining protein
RA	2,633,379	G→T	5.0%	G17C (GGC→TGC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,638,449	T→G	5.8%	intergenic (+100/‑82)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,638,450	C→A	5.5%	intergenic (+101/‑81)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,656,268	G→C	7.1%	intergenic (+41/+29)	PP_2323 → / ← aroF‑I	hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA	2,673,045	T→G	10.3%	intergenic (+71/‑96)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,673,073	C→A	12.9%	intergenic (+99/‑68)	prpF → / → prpD	aconitate isomerase/2‑methylcitrate dehydratase
RA	2,674,663	T→G	10.3%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,674,666	C→A	10.4%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,737,574	T→G	6.2%	V640G (GTG→GGG)	polB →	DNA polymerase II
RA	2,750,167	G→T	7.6%	intergenic (+18/+17)	PP_2399 → / ← PP_2400	hypothetical protein/hypothetical protein
RA	2,750,168	C→G	7.7%	intergenic (+19/+16)	PP_2399 → / ← PP_2400	hypothetical protein/hypothetical protein
RA	2,750,169	A→C	9.2%	intergenic (+20/+15)	PP_2399 → / ← PP_2400	hypothetical protein/hypothetical protein
RA	2,764,025	G→T	5.3%	P44Q (CCG→CAG)	PP_2412 ←	ParA family protein
RA	2,764,032	G→C	5.6%	L42V (CTC→GTC)	PP_2412 ←	ParA family protein
RA	2,764,033	G→C	5.6%	D41E (GAC→GAG)	PP_2412 ←	ParA family protein
RA	2,781,099	A→C	5.1%	K152Q (AAG→CAG)	sotB →	sugar efflux transporter
RA	2,781,992	C→G	5.0%	A169P (GCA→CCA)	PP_2429 ←	membrane protein
RA	2,789,136	G→C	5.2%	Q199H (CAG→CAC)	PP_2437 →	acyl‑CoA dehydrogenase
RA	2,798,744	G→T	5.3%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,798,747	A→C	5.7%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,804,163	A→G	5.7%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,804,169	C→T	6.4%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,804,172	A→G	5.9%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,804,178	C→T	6.1%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,813,536	A→C	6.0%	noncoding (416/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,817,767	C→T	5.4%	intergenic (+69/‑41)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,817,770	C→G	5.1%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,817,773	A→G	5.1%	intergenic (+75/‑35)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,821,586	T→A	5.8%	I21N (ATT→AAT)	PP_2472 →	MerR family transcriptional regulator
RA	2,825,589	C→T	6.9%	intergenic (+398/+114)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,825,590	G→C	6.8%	intergenic (+399/+113)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,825,591	A→G	6.9%	intergenic (+400/+112)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,868,821	T→G	10.7%	S297A (TCG→GCG)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,870,470	G→T	6.7%	intergenic (‑96/+36)	gllP ← / ← glllA	porin‑like protein/gallate dioxygenase
RA	2,870,471	G→C	6.7%	intergenic (‑97/+35)	gllP ← / ← glllA	porin‑like protein/gallate dioxygenase
RA	2,870,472	A→C	6.8%	intergenic (‑98/+34)	gllP ← / ← glllA	porin‑like protein/gallate dioxygenase
RA	2,870,480	T→C	5.5%	intergenic (‑106/+26)	gllP ← / ← glllA	porin‑like protein/gallate dioxygenase
RA	2,878,639	G→A	5.4%	V143M (GTG→ATG) ‡	cigR →	membrane protein
RA	2,878,640	T→C	5.5%	V143A (GTG→GCG) ‡	cigR →	membrane protein
RA	2,878,749	G→T	8.4%	intergenic (+63/+19)	cigR → / ← PP_2527	membrane protein/membrane protein
RA	2,878,750	C→G	8.4%	intergenic (+64/+18)	cigR → / ← PP_2527	membrane protein/membrane protein
RA	2,878,751	A→C	10.3%	intergenic (+65/+17)	cigR → / ← PP_2527	membrane protein/membrane protein
RA	2,878,760	A→T	6.9%	intergenic (+74/+8)	cigR → / ← PP_2527	membrane protein/membrane protein
RA	2,885,308	T→C	6.1%	V53A (GTG→GCG)	PP_2535 →	transport protein
RA	2,885,311	T→C	6.4%	L54P (CTG→CCG)	PP_2535 →	transport protein
RA	2,885,316	G→A	6.2%	G56S (GGC→AGC)	PP_2535 →	transport protein
RA	2,885,319	G→A	6.2%	A57T (GCG→ACG)	PP_2535 →	transport protein
RA	2,904,228	A→T	6.1%	intergenic (+48/+20)	PP_2552 → / ← PP_2553	DOPA decarboxylase/MFS transporter
RA	2,904,229	A→T	6.1%	intergenic (+49/+19)	PP_2552 → / ← PP_2553	DOPA decarboxylase/MFS transporter
RA	2,904,230	A→T	6.3%	intergenic (+50/+18)	PP_2552 → / ← PP_2553	DOPA decarboxylase/MFS transporter
RA	2,956,326	G→C	14.8%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,333	A→C	19.3%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,334	G→T	19.2%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,956,341	G→C	16.0%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
JC	2,962,073	Δ84 bp	9.3%	intergenic (+36/‑77)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,963,782	T→C	16.8%	intergenic (+56/+86)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,791	G→C	21.1%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,792	T→C	20.9%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,795	G→C	20.6%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,798	G→A	21.1%	intergenic (+72/+70)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,799	G→C	21.1%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,808	G→A	17.9%	intergenic (+82/+60)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,825	G→A	8.6%	intergenic (+99/+43)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,963,826	C→T	8.6%	intergenic (+100/+42)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,977,635	G→C	5.1%	L411V (CTG→GTG)	PP_2600 ←	hypothetical protein
RA	2,977,638	G→C	5.1%	P410A (CCG→GCG)	PP_2600 ←	hypothetical protein
RA	3,006,807	C→G	5.7%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,006,813	G→A	5.7%	R182Q (CGG→CAG)	PP_2625 →	hypothetical protein
RA	3,006,816	G→C	6.8%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,006,819	T→C	6.7%	L184P (CTG→CCG)	PP_2625 →	hypothetical protein
RA	3,006,825	C→G	6.9%	A186G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,011,460	T→G	7.8%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,011,465	G→T	7.4%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,011,466	A→C	7.5%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,011,471	C→A	7.4%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,036,081	C→G	5.1%	I132M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,036,084	C→G	5.1%	I133M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,036,087	C→G	5.1%	I134M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,053,574	T→C	7.2%	intergenic (+37/‑259)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,577	T→C	8.7%	intergenic (+40/‑256)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,582	A→G	11.5%	intergenic (+45/‑251)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,596	G→T	15.3%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,597	A→C	16.8%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,611	C→T	7.8%	intergenic (+74/‑222)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,053,616	G→A	5.6%	intergenic (+79/‑217)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,058,210	G→A	8.4%	intergenic (+19/+27)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,212	T→C	7.7%	intergenic (+21/+25)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,213	G→T	9.6%	intergenic (+22/+24)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,214	A→T	12.5%	intergenic (+23/+23)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,058,215	T→C	8.1%	intergenic (+24/+22)	PP_2664 → / ← agmR	two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator
RA	3,059,725	A→C	6.0%	intergenic (‑208/+100)	PP_2666 ← / ← PP_2667	hypothetical protein/ABC transporter permease
RA	3,065,811	A→T	5.1%	intergenic (+185/+21)	exaE → / ← PP_2673	transcriptional regulator ExaE/pentapeptide repeat‑containing protein
RA	3,065,812	A→T	5.2%	intergenic (+186/+20)	exaE → / ← PP_2673	transcriptional regulator ExaE/pentapeptide repeat‑containing protein
RA	3,075,468	A→T	6.2%	intergenic (+44/‑310)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,469	C→T	5.9%	intergenic (+45/‑309)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,471	G→A	5.9%	intergenic (+47/‑307)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,473	T→C	5.9%	intergenic (+49/‑305)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,479	C→T	6.0%	intergenic (+55/‑299)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,480	A→G	5.9%	intergenic (+56/‑298)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,486	G→A	5.9%	intergenic (+62/‑292)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,488	T→C	5.9%	intergenic (+64/‑290)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,490	A→G	6.3%	intergenic (+66/‑288)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,075,491	A→T	6.3%	intergenic (+67/‑287)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,131,848	G→C	5.3%	A190G (GCC→GGC)	PP_2744 ←	ribose‑phosphate pyrophosphokinase family protein
RA	3,136,493	T→A	5.0%	L127Q (CTG→CAG)	PP_2748 →	ABC transporter ATP‑binding protein
RA	3,142,644	C→T	6.1%	intergenic (+80/‑210)	PP_2753 → / → PP_2754	ABC transporter ATP‑binding protein/OprD family outer membrane porin
RA	3,142,645	A→G	6.5%	intergenic (+81/‑209)	PP_2753 → / → PP_2754	ABC transporter ATP‑binding protein/OprD family outer membrane porin
RA	3,151,570	G→C	6.5%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,151,571	G→C	6.5%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,171,048	G→C	5.8%	G163A (GGC→GCC)	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,194,270	G→C	5.6%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,194,271	G→C	5.2%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,203,894	A→T	5.4%	intergenic (‑246/+31)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,203,898	A→T	6.4%	intergenic (‑250/+27)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,203,902	A→T	6.1%	intergenic (‑254/+23)	ethA ← / ← PP_2806	FAD‑containing monooxygenase EthA/TetR family transcriptional regulator
RA	3,245,190	G→C	7.3%	intergenic (+18/‑107)	PP_2837 → / → PP_2838	uronate transporter/hypothetical protein
RA	3,257,484	G→A	7.0%	intergenic (+22/+221)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,257,489	T→C	6.9%	intergenic (+27/+216)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,260,835	C→T	5.4%	intergenic (‑106/+30)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,260,838	T→G	5.6%	intergenic (‑109/+27)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,260,841	C→A	5.5%	intergenic (‑112/+24)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,260,844	A→G	5.5%	intergenic (‑115/+21)	PP_2852 ← / ← PP_2853	sulfatase domain‑containing protein/hypothetical protein
RA	3,271,103	G→C	6.0%	intergenic (+28/+31)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,271,105	A→T	5.9%	intergenic (+30/+29)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,271,106	A→T	5.9%	intergenic (+31/+28)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,271,108	G→C	5.9%	intergenic (+33/+26)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,281,305	T→C	5.1%	intergenic (+15/+32)	PP_2874 → / ← PP_2875	hypothetical protein/hypothetical protein
RA	3,282,333	C→T	5.9%	Q260Q (CAG→CAA)	ampC ←	beta‑lactamase
RA	3,282,338	T→C	6.0%	M259V (ATG→GTG)	ampC ←	beta‑lactamase
RA	3,282,339	G→A	6.0%	H258H (CAC→CAT)	ampC ←	beta‑lactamase
RA	3,282,344	A→G	5.7%	L257L (TTG→CTG)	ampC ←	beta‑lactamase
RA	3,297,313	G→C	8.2%	Q535H (CAG→CAC)	PP_2893 →	hypothetical protein
RA	3,297,315	T→G	11.7%	L536R (CTG→CGG)	PP_2893 →	hypothetical protein
RA	3,313,093	A→C	5.2%	D103A (GAT→GCT)	csiD →	carbon starvation induced protein
RA	3,313,095	G→C	5.1%	D104H (GAC→CAC)	csiD →	carbon starvation induced protein
RA	3,313,100	G→C	5.4%	V105V (GTG→GTC)	csiD →	carbon starvation induced protein
RA	3,313,102	G→T	5.2%	S106I (AGC→ATC)	csiD →	carbon starvation induced protein
RA	3,317,679	G→T	5.7%	intergenic (+28/‑134)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,680	T→A	5.8%	intergenic (+29/‑133)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,681	T→A	5.7%	intergenic (+30/‑132)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,317,682	A→C	6.3%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,332,185	A→C	5.0%	L338R (CTG→CGG)	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,333,147	C→G	5.6%	V17V (GTG→GTC) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,333,148	A→T	5.5%	V17E (GTG→GAG) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,333,149	C→G	5.5%	V17L (GTG→CTG) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,344,131	T→A	10.7%	intergenic (‑141/+102)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,136	A→C	8.5%	intergenic (‑146/+97)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,344,184	A→C	8.3%	intergenic (‑194/+49)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,345,571:1	+A	5.4%	coding (249/1587 nt)	ybiT ←	ABC‑F family ATPase
RA	3,345,576	Δ1 bp	5.2%	coding (244/1587 nt)	ybiT ←	ABC‑F family ATPase
RA	3,357,166	A→G	5.9%	intergenic (+64/+78)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,357,167	G→C	5.9%	intergenic (+65/+77)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,357,168	C→T	5.9%	intergenic (+66/+76)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,357,174	C→T	5.7%	intergenic (+72/+70)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,359,703	T→A	5.0%	intergenic (+89/+24)	PP_2949 → / ← PP_2950	permease/hypothetical protein
RA	3,377,810	C→G	9.5%	intergenic (+268/+24)	PP_2970 → / ← PP_2971	hypothetical protein/transposase
RA	3,403,895	C→G	5.3%	intergenic (+123/‑119)	aroQ‑III → / → PP_3004	type II 3‑dehydroquinate dehydratase/hypothetical protein
RA	3,429,882	C→G	6.7%	intergenic (+478/‑34)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,429,884	T→C	6.8%	intergenic (+480/‑32)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,429,885	G→A	6.3%	intergenic (+481/‑31)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,429,887	C→G	6.8%	intergenic (+483/‑29)	PP_3039 → / → PP_3040	hypothetical protein/holin
RA	3,448,521	T→G	13.1%	F763C (TTT→TGT)	PP_3062 →	tail length determination protein
RA	3,452,278	A→C	11.4%	S18R (AGC→CGC)	PP_5556 →	bacteriophage lysis protein
RA	3,452,283	T→G	13.1%	A19A (GCT→GCG)	PP_5556 →	bacteriophage lysis protein
RA	3,458,455	C→T	5.3%	intergenic (‑17/+96)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,458,472	A→G	6.0%	intergenic (‑34/+79)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,471,833	T→G	17.8%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,495,851	T→A	7.1%	S178C (AGC→TGC)	clpV ←	protein ClpV1
RA	3,533,558	T→A	7.0%	L128Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,533,561	T→A	7.3%	L129Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,539,769	C→A	5.2%	intergenic (+64/‑91)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,546,717	C→A	5.2%	intergenic (+31/+32)	PP_3128 → / ← galE	exopolysaccharide biosynthesis/transport protein/UDP‑glucose 4‑epimerase
RA	3,546,718	T→C	5.2%	intergenic (+32/+31)	PP_3128 → / ← galE	exopolysaccharide biosynthesis/transport protein/UDP‑glucose 4‑epimerase
RA	3,546,719	T→A	5.6%	intergenic (+33/+30)	PP_3128 → / ← galE	exopolysaccharide biosynthesis/transport protein/UDP‑glucose 4‑epimerase
RA	3,546,720	G→A	5.4%	intergenic (+34/+29)	PP_3128 → / ← galE	exopolysaccharide biosynthesis/transport protein/UDP‑glucose 4‑epimerase
RA	3,546,721	T→G	5.1%	intergenic (+35/+28)	PP_3128 → / ← galE	exopolysaccharide biosynthesis/transport protein/UDP‑glucose 4‑epimerase
RA	3,576,667	C→G	5.3%	P235R (CCG→CGG) ‡	yneJ →	LysR family DNA‑binding transcriptional regulator
RA	3,576,668	G→C	5.5%	P235P (CCG→CCC) ‡	yneJ →	LysR family DNA‑binding transcriptional regulator
RA	3,576,669	C→G	5.1%	R236G (CGC→GGC)	yneJ →	LysR family DNA‑binding transcriptional regulator
RA	3,578,239	T→C	5.1%	T700A (ACG→GCG)	PP_3155 ←	ferric siderophore receptor
RA	3,578,242	G→A	5.1%	R699C (CGC→TGC)	PP_3155 ←	ferric siderophore receptor
RA	3,583,420	T→A	9.4%	intergenic (+105/‑219)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,583,421	T→A	5.0%	intergenic (+106/‑218)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,620,448	A→G	10.0%	intergenic (+19/‑210)	PP_3186 → / → codB	transcriptional regulator/cytosine transporter
RA	3,629,136	G→C	5.3%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,629,794	A→C	8.0%	L229R (CTT→CGT)	PP_3195 ←	hypothetical protein
RA	3,638,138	A→G	5.1%	Q206Q (CAA→CAG)	PP_3201 →	BNR domain‑containing protein
RA	3,664,898	C→G	6.9%	intergenic (‑41/+34)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,664,900	G→A	7.3%	intergenic (‑43/+32)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,664,901	T→C	6.9%	intergenic (‑44/+31)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,664,903	C→G	6.8%	intergenic (‑46/+29)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,674,934	A→T	5.6%	E79V (GAG→GTG)	fnrB →	Crp/Fnr family transcriptional regulator
RA	3,758,587	G→T	5.5%	A96A (GCC→GCA)	PP_3316 ←	chaperone‑associated ATPase
RA	3,758,590	A→C	5.7%	V95V (GTT→GTG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,767,934	A→T	9.2%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,767,939	A→T	7.7%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,768,494	A→G	7.2%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,768,496	G→C	7.1%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,768,498	C→T	7.0%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,773,252	T→G	9.0%	L92R (CTG→CGG)	PP_5600 →	hypothetical protein
RA	3,773,267	C→A	5.2%	P97Q (CCG→CAG)	PP_5600 →	hypothetical protein
RA	3,781,365	T→G	16.6%	intergenic (+55/‑88)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,781,385	G→C	9.1%	intergenic (+75/‑68)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,798,884	A→T	5.6%	L211M (TTG→ATG)	PP_3355 ←	beta‑ketothiolase
RA	3,798,889	A→T	5.7%	I209N (ATT→AAT)	PP_3355 ←	beta‑ketothiolase
RA	3,817,651	A→G	6.5%	D328G (GAC→GGC)	PP_3368 →	MFS transporter
RA	3,817,654	T→A	6.6%	I329N (ATT→AAT)	PP_3368 →	MFS transporter
RA	3,817,657	C→T	6.8%	A330V (GCC→GTC)	PP_3368 →	MFS transporter
RA	3,850,713	G→C	5.6%	intergenic (‑88/+11)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,858,111	T→A	5.7%	I169N (ATT→AAT)	alkB →	alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
RA	3,874,851	T→G	5.7%	E354A (GAG→GCG)	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,876,599	G→C	5.7%	L259V (CTG→GTG)	PP_3420 ←	sensor histidine kinase
RA	3,876,600	G→C	5.7%	H258Q (CAC→CAG)	PP_3420 ←	sensor histidine kinase
RA	3,877,797	G→C	9.4%	L446V (CTG→GTG)	PP_3421 ←	sensor histidine kinase
RA	3,882,142	A→G	6.2%	T80A (ACC→GCC) ‡	PP_3425 →	RND family transporter MFP subunit
RA	3,882,143	C→G	6.3%	T80S (ACC→AGC) ‡	PP_3425 →	RND family transporter MFP subunit
RA	3,882,144	C→T	6.3%	T80T (ACC→ACT) ‡	PP_3425 →	RND family transporter MFP subunit
RA	3,888,582	C→A	5.0%	A203E (GCG→GAG)	PP_3428 →	TPR repeat‑containing protein
RA	3,888,590	C→G	6.8%	P206A (CCC→GCC) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,888,591	C→G	6.8%	P206R (CCC→CGC) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,888,592	C→G	6.8%	P206P (CCC→CCG) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,888,600	T→G	5.1%	L209R (CTC→CGC)	PP_3428 →	TPR repeat‑containing protein
RA	3,930,602	A→G	5.2%	D294D (GAT→GAC) ‡	peaA ←	quinohemoprotein amine dehydrogenase subunit alpha
RA	3,930,603	T→A	5.7%	D294V (GAT→GTT) ‡	peaA ←	quinohemoprotein amine dehydrogenase subunit alpha
RA	3,930,604	C→T	5.1%	D294N (GAT→AAT) ‡	peaA ←	quinohemoprotein amine dehydrogenase subunit alpha
RA	3,934,790	G→T	12.4%	intergenic (+20/+18)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,934,791	A→T	9.1%	intergenic (+21/+17)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,934,792	A→C	13.6%	intergenic (+22/+16)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,938,985	A→T	5.5%	L474Q (CTG→CAG)	PP_3467 ←	sigma‑54 dependent transcriptional regulator
RA	3,956,096	G→T	8.1%	intergenic (‑67/+128)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,956,097	C→G	9.0%	intergenic (‑68/+127)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,956,098	A→C	15.1%	intergenic (‑69/+126)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,956,143	T→G	8.2%	intergenic (‑114/+81)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,979,383	T→C	6.0%	N28S (AAC→AGC) ‡	PP_3503 ←	sigma‑54 dependent transcriptional regulator
RA	3,979,384	T→A	5.9%	N28Y (AAC→TAC) ‡	PP_3503 ←	sigma‑54 dependent transcriptional regulator
RA	3,979,385	G→A	6.0%	R27R (CGC→CGT)	PP_3503 ←	sigma‑54 dependent transcriptional regulator
RA	3,989,033	G→T	5.5%	intergenic (+34/+156)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,989,034	C→T	5.7%	intergenic (+35/+155)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,989,035	A→G	5.8%	intergenic (+36/+154)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,989,036	A→C	7.3%	intergenic (+37/+153)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	4,018,201	G→A	100%	intergenic (+144/‑36)	mvaB → / → PP_mr44	hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA
RA	4,054,900	A→G	16.8%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,054,903	C→G	14.6%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,054,906	C→T	14.7%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,057,676	G→C	5.0%	R143G (CGC→GGC)	PP_3572 ←	hypothetical protein
RA	4,057,678	T→G	5.8%	D142A (GAC→GCC)	PP_3572 ←	hypothetical protein
RA	4,057,685	G→C	5.7%	L140V (CTG→GTG)	PP_3572 ←	hypothetical protein
RA	4,057,686	G→C	5.7%	H139Q (CAC→CAG)	PP_3572 ←	hypothetical protein
RA	4,067,994	C→G	5.1%	E446D (GAG→GAC) ‡	PP_3581 ←	membrane protein
RA	4,067,995	T→A	5.1%	E446V (GAG→GTG) ‡	PP_3581 ←	membrane protein
RA	4,078,602	G→A	9.9%	intergenic (‑147/+477)	mdtA ← / ← PP_3586	multidrug transporter membrane fusion protein/transposase
RA	4,078,603	T→C	9.9%	intergenic (‑148/+476)	mdtA ← / ← PP_3586	multidrug transporter membrane fusion protein/transposase
RA	4,084,440	A→T	6.8%	intergenic (‑251/+133)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,084,441	A→T	7.4%	intergenic (‑252/+132)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,084,442	A→T	7.0%	intergenic (‑253/+131)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,084,500	T→C	6.7%	intergenic (‑311/+73)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,106,827	C→G	5.7%	A28G (GCC→GGC)	PP_3610 →	hypothetical protein
RA	4,106,830	C→G	5.2%	A29G (GCC→GGC)	PP_3610 →	hypothetical protein
RA	4,106,907	G→T	5.1%	A55S (GCA→TCA) ‡	PP_3610 →	hypothetical protein
RA	4,106,909	A→C	5.4%	A55A (GCA→GCC) ‡	PP_3610 →	hypothetical protein
RA	4,138,970	T→A	5.9%	A351A (GCA→GCT) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,138,972	C→G	5.7%	A351P (GCA→CCA) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,138,974	T→A	5.7%	Q350L (CAG→CTG)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,141,753	T→A	5.7%	intergenic (+48/+22)	PP_3640 → / ← PP_3641	AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,141,754	T→A	5.6%	intergenic (+49/+21)	PP_3640 → / ← PP_3641	AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,143,578	C→A	5.9%	G28G (GGC→GGA)	PP_3643 →	oxidoreductase
RA	4,143,579	T→G	6.1%	S29A (TCG→GCG) ‡	PP_3643 →	oxidoreductase
RA	4,143,581	G→C	5.8%	S29S (TCG→TCC) ‡	PP_3643 →	oxidoreductase
RA	4,148,875	T→A	11.7%	intergenic (+35/‑88)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,148,876	T→A	11.7%	intergenic (+36/‑87)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,155,027	A→T	9.3%	intergenic (+33/‑364)	PP_3654 → / → PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,155,065	A→C	5.0%	intergenic (+71/‑326)	PP_3654 → / → PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,160,283	C→T	7.7%	G68G (GGG→GGA) ‡	PP_3658 ←	aromatic compound MFS transporter
RA	4,160,285	C→G	8.0%	G68R (GGG→CGG) ‡	PP_3658 ←	aromatic compound MFS transporter
RA	4,160,287	A→G	7.5%	F67S (TTC→TCC)	PP_3658 ←	aromatic compound MFS transporter
RA	4,163,456	C→G	7.7%	A158G (GCG→GGG)	PP_3661 →	membrane protein
RA	4,163,459	T→G	26.5%	L159R (CTG→CGG)	PP_3661 →	membrane protein
RA	4,163,464	A→C	16.8%	S161R (AGC→CGC)	PP_3661 →	membrane protein
RA	4,163,474	A→C	11.1%	H164P (CAT→CCT)	PP_3661 →	membrane protein
RA	4,167,092	T→C	8.0%	intergenic (‑43/+34)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,167,096	T→A	8.4%	intergenic (‑47/+30)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,167,097	T→A	7.7%	intergenic (‑48/+29)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,167,101	G→A	8.4%	intergenic (‑52/+25)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,168,491	T→C	5.1%	intergenic (‑37/‑145)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,168,495	T→G	5.4%	intergenic (‑41/‑141)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,168,498	C→A	5.2%	intergenic (‑44/‑138)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,168,502	G→A	5.2%	intergenic (‑48/‑134)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,175,173	T→G	12.0%	intergenic (‑288/‑99)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,175	A→T	12.0%	intergenic (‑290/‑97)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,176	A→T	11.7%	intergenic (‑291/‑96)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,175,178	C→A	11.2%	intergenic (‑293/‑94)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,193,342	G→T	5.8%	R82L (CGT→CTT) ‡	PP_3684 →	hypothetical protein
RA	4,193,343	T→C	5.9%	R82R (CGT→CGC) ‡	PP_3684 →	hypothetical protein
RA	4,193,344	G→A	5.9%	E83K (GAG→AAG) ‡	PP_3684 →	hypothetical protein
RA	4,193,345	A→C	5.6%	E83A (GAG→GCG) ‡	PP_3684 →	hypothetical protein
RA	4,201,285	G→A	5.1%	intergenic (+134/+235)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,201,286	G→C	5.3%	intergenic (+135/+234)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,201,287	T→C	5.2%	intergenic (+136/+233)	PP_5618 → / ← PP_5619	Cro/CI family transcriptional regulator/hypothetical protein
RA	4,205,205	T→A	5.5%	R276* (AGA→TGA)	PP_3690 ←	hypothetical protein
RA	4,205,208	T→A	5.5%	N275Y (AAT→TAT)	PP_3690 ←	hypothetical protein
RA	4,245,229	C→T	6.0%	P18P (CCG→CCA)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,245,235	T→G	6.1%	R16S (AGA→AGC)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,245,240	C→A	6.1%	A15S (GCT→TCT)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,245,246	A→G	6.2%	W13R (TGG→CGG)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,251,178	C→G	5.9%	M30I (ATG→ATC)	alr ←	alanine racemase
RA	4,251,181	C→G	5.7%	S29S (TCG→TCC)	alr ←	alanine racemase
RA	4,257,183	A→G	10.0%	intergenic (‑158/+82)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,187	C→A	14.5%	intergenic (‑162/+78)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,190	A→G	13.0%	intergenic (‑165/+75)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,195	G→C	13.9%	intergenic (‑170/+70)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,198	G→C	13.0%	intergenic (‑173/+67)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,203	C→T	13.2%	intergenic (‑178/+62)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,206	T→G	12.1%	intergenic (‑181/+59)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,257,210	C→T	11.3%	intergenic (‑185/+55)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,258,776	G→T	5.9%	intergenic (‑105/+92)	rocE ← / ← PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator
RA	4,258,777	C→G	5.1%	intergenic (‑106/+91)	rocE ← / ← PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator
RA	4,258,778	A→C	5.1%	intergenic (‑107/+90)	rocE ← / ← PP_3728	amino acid permease RocE/two‑component system sensor histidine kinase/response regulator
RA	4,279,405	C→G	5.8%	R123R (CGC→CGG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,279,406	G→T	5.7%	V124L (GTG→TTG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,301,859	A→G	6.4%	intergenic (+33/‑65)	gloA → / → PP_3767	lactoylglutathione lyase/hypothetical protein
RA	4,301,860	C→T	6.4%	intergenic (+34/‑64)	gloA → / → PP_3767	lactoylglutathione lyase/hypothetical protein
RA	4,306,568	G→C	7.4%	intergenic (+65/‑1235)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,306,570	G→C	7.7%	intergenic (+67/‑1233)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,306,572	G→C	7.1%	intergenic (+69/‑1231)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,321,015	A→C	6.9%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,321,018	G→T	6.4%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,339,333	A→G	5.5%	R145R (CGT→CGC)	PP_3806 ←	isochorismatase family hydrolase
RA	4,343,486	A→T	14.3%	intergenic (+113/+29)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,343,487	A→T	10.4%	intergenic (+114/+28)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,345,068	A→T	29.4%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,069	G→C	31.1%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,074	A→G	31.1%	intergenic (+66/‑265)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,075	C→T	31.2%	intergenic (+67/‑264)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,076	A→G	31.2%	intergenic (+68/‑263)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,077	C→T	31.2%	intergenic (+69/‑262)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,082	G→C	26.7%	intergenic (+74/‑257)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,345,083	A→T	26.7%	intergenic (+75/‑256)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,349,295	A→T	6.8%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,297	C→T	6.1%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,298	A→G	6.2%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,303	C→G	6.1%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,306	C→G	6.4%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,311	C→T	7.1%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,312	A→G	7.1%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,349,314	A→T	7.3%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,353,698	A→G	49.1%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,380,435	C→A	6.8%	A32S (GCG→TCG)	PP_5637 ←	hypothetical protein
RA	4,380,437	A→T	6.7%	V31D (GTC→GAC)	PP_5637 ←	hypothetical protein
RA	4,380,439	T→G	6.8%	R30R (CGA→CGC)	PP_5637 ←	hypothetical protein
RA	4,384,135	G→A	5.3%	A114A (GCG→GCA)  A66V (GCG→GTG) ‡	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,384,136	C→G	5.3%	Q115E (CAG→GAG)  A66P (GCG→CCG) ‡	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,384,139	G→C	5.4%	A116P (GCT→CCT)  P65A (CCT→GCT)	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,384,142	C→G	5.3%	L117V (CTG→GTG) ‡ E64Q (GAG→CAG)	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,384,143	T→C	5.7%	L117P (CTG→CCG) ‡ A63A (GCA→GCG)	PP_5639 → PP_3855 ←	hypothetical protein hypothetical protein
RA	4,387,814	G→A	9.3%	intergenic (‑32/+230)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,387,815	T→C	7.9%	intergenic (‑33/+229)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,394,501	T→A	6.5%	T411T (ACA→ACT)	PP_3865 ←	tail protein
RA	4,435,077	T→G	7.5%	intergenic (+37/‑147)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,435,078	G→T	7.5%	intergenic (+38/‑146)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,435,079	A→C	7.5%	intergenic (+39/‑145)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,435,080	C→A	7.6%	intergenic (+40/‑144)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,437,700	A→C	8.6%	L73R (CTT→CGT)	PP_3927 ←	type 12 methyltransferase
RA	4,447,621	C→G	6.6%	intergenic (‑98/+40)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,447,622	C→G	6.6%	intergenic (‑99/+39)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,455,122	C→G	7.4%	A68G (GCC→GGC)	nicA →	nicotinate dehydrogenase subunit A
RA	4,482,806	T→G	5.3%	Q60P (CAG→CCG) ‡	PP_3968 ←	sensor histidine kinase
RA	4,482,807	G→C	5.2%	Q60E (CAG→GAG) ‡	PP_3968 ←	sensor histidine kinase
RA	4,493,984	A→G	5.1%	intergenic (+344/+227)	PP_3981 → / ← PP_3982	transposase/hypothetical protein
RA	4,508,782	C→T	7.8%	intergenic (+38/‑60)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,508,783	A→G	7.9%	intergenic (+39/‑59)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,517,455	C→A	6.3%	G9V (GGT→GTT)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,517,458	T→G	7.2%	N8T (AAC→ACC)	lolA ←	outer membrane lipoprotein carrier protein
RA	4,522,225	A→C	6.9%	intergenic (+69/+17)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,226	A→T	6.9%	intergenic (+70/+16)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,522,227	G→T	6.6%	intergenic (+71/+15)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,530,543	C→G	5.6%	H161D (CAC→GAC) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,530,544	A→C	5.6%	H161P (CAC→CCC) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,530,550	T→A	5.7%	V163D (GTC→GAC)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,530,556	G→T	5.9%	G165V (GGC→GTC) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,530,557	C→G	5.9%	G165G (GGC→GGG) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,535,018	T→A	8.9%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,535,019	T→A	9.4%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,542,538:1	+T	17.2%	coding (880/1533 nt)	PP_4025 →	transposase
RA	4,542,538:2	+G	17.2%	coding (880/1533 nt)	PP_4025 →	transposase
RA	4,542,538:3	+G	17.2%	coding (880/1533 nt)	PP_4025 →	transposase
RA	4,581,040	T→C	5.3%	H148H (CAT→CAC)	ybhP‑II →	phosphohydrolase
RA	4,581,043	G→A	5.1%	A149A (GCG→GCA)	ybhP‑II →	phosphohydrolase
RA	4,581,045	T→A	5.0%	V150D (GTC→GAC)	ybhP‑II →	phosphohydrolase
RA	4,585,592	C→A	6.0%	Q943H (CAG→CAT) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,585,593	T→A	6.4%	Q943L (CAG→CTG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,585,596	T→A	6.4%	K942M (AAG→ATG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,585,597	T→G	6.4%	K942Q (AAG→CAG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,591,050	A→G	14.4%	intergenic (+140/+77)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,591,052	C→A	14.1%	intergenic (+142/+75)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,591,054	T→C	14.5%	intergenic (+144/+73)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,591,067	T→G	14.6%	intergenic (+157/+60)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,592,690	G→T	6.3%	R40R (CGC→CGA) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,692	G→C	6.3%	R40G (CGC→GGC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,693	G→C	6.3%	S39S (TCC→TCG) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,592,695	A→C	6.3%	S39A (TCC→GCC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,602,746	C→A	5.2%	Q686H (CAG→CAT) ‡	PP_4071 ←	membrane protein
RA	4,602,747	T→A	5.1%	Q686L (CAG→CTG) ‡	PP_4071 ←	membrane protein
RA	4,602,750	T→A	5.1%	K685M (AAG→ATG) ‡	PP_4071 ←	membrane protein
RA	4,602,751	T→G	5.1%	K685Q (AAG→CAG) ‡	PP_4071 ←	membrane protein
RA	4,609,200	C→G	5.0%	P12R (CCG→CGG)	PP_4076 →	hypothetical protein
RA	4,637,494	A→C	5.1%	intergenic (+104/+55)	PP_4096 → / ← PP_t59	hypothetical protein/tRNA‑Gly
RA	4,654,977	T→G	5.7%	H311P (CAC→CCC)	PP_4113 ←	hypothetical protein
RA	4,654,980	T→A	5.5%	K310M (AAG→ATG) ‡	PP_4113 ←	hypothetical protein
RA	4,654,981	T→A	5.4%	K310* (AAG→TAG) ‡	PP_4113 ←	hypothetical protein
RA	4,654,984	C→A	5.8%	G309C (GGC→TGC)	PP_4113 ←	hypothetical protein
RA	4,674,726	G→C	5.5%	T21T (ACG→ACC)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,674,727	G→A	5.5%	V22M (GTG→ATG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,674,728	T→C	5.5%	V22A (GTG→GCG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,674,729	G→C	5.5%	V22V (GTG→GTC) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,678,544	G→C	7.2%	P107P (CCG→CCC)	PP_4137 →	outer membrane siderophore receptor
RA	4,678,545	G→C	7.2%	G108R (GGG→CGG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,678,546	G→C	7.2%	G108A (GGG→GCG) ‡	PP_4137 →	outer membrane siderophore receptor
RA	4,705,764	A→G	5.7%	intergenic (‑82/+68)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,767	T→G	5.6%	intergenic (‑85/+65)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,768	C→T	5.6%	intergenic (‑86/+64)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,769	A→G	5.6%	intergenic (‑87/+63)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,774	C→T	5.9%	intergenic (‑92/+58)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,775	A→G	5.9%	intergenic (‑93/+57)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,780	C→T	5.9%	intergenic (‑98/+52)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,781	A→G	5.9%	intergenic (‑99/+51)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,782	C→A	5.8%	intergenic (‑100/+50)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,705,785	C→T	5.1%	intergenic (‑103/+47)	kdpD ← / ← kdpC	sensor protein/potassium‑transporting ATPase subunit C
RA	4,710,329	A→C	13.9%	intergenic (‑72/+105)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,397	T→C	5.4%	intergenic (‑140/+37)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,398	C→T	5.2%	intergenic (‑141/+36)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,408	T→A	11.8%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,409	T→A	12.1%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,419	A→G	11.0%	intergenic (‑162/+15)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,710,420	G→A	9.1%	intergenic (‑163/+14)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,730,035	G→A	6.4%	intergenic (+25/+43)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,730,036	A→T	6.3%	intergenic (+26/+42)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,730,037	T→C	6.4%	intergenic (+27/+41)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,745,790	T→G	8.4%	intergenic (+32/+720)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,791	C→A	6.6%	intergenic (+33/+719)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,833	C→G	19.9%	intergenic (+75/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,835	T→A	21.9%	intergenic (+77/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,836	T→A	18.7%	intergenic (+78/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,745,838	C→G	18.9%	intergenic (+80/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,222:1	+C	100%	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,224	A→G	100%	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,226	C→T	100%	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,229	C→T	100%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,232	C→G	100%	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,234	2 bp→CT	100%	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,248	C→T	100%	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,250	A→C	100%	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,746,253	2 bp→GC	100%	intergenic (+495/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,763,124	C→T	6.0%	P468L (CCG→CTG)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,763,130	G→C	6.8%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,763,135	G→C	6.3%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,763,141	A→G	5.5%	intergenic (+7/+14)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,772,812	C→T	5.6%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,772,813	A→G	5.5%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,773,051	G→C	6.5%	P252R (CCT→CGT) ‡	PP_4218 ←	lipase/esterase family protein
RA	4,773,052	G→C	6.4%	P252A (CCT→GCT) ‡	PP_4218 ←	lipase/esterase family protein
RA	4,773,060	T→A	6.4%	N249I (AAC→ATC)	PP_4218 ←	lipase/esterase family protein
RA	4,801,598	A→G	14.1%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,606	C→T	19.8%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,608	G→C	20.9%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,611	G→C	18.1%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,613	A→G	18.8%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,801,621	C→T	14.3%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,811,109	A→T	5.4%	S593T (TCG→ACG)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,811,110	A→T	5.7%	R592R (CGT→CGA)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,813,183	G→C	5.3%	intergenic (‑298/‑257)	PP_4234 ← / → dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
RA	4,813,186	G→C	5.1%	intergenic (‑301/‑254)	PP_4234 ← / → dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
RA	4,829,266	G→C	5.4%	S2306R (AGC→AGG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,842,275	A→G	5.4%	S430G (AGC→GGC)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,847,818	T→G	5.0%	S316A (TCG→GCG) ‡	ccoP‑II →	cbb3‑type cytochrome c oxidase subunit
RA	4,847,819	C→T	5.0%	S316L (TCG→TTG) ‡	ccoP‑II →	cbb3‑type cytochrome c oxidase subunit
RA	4,847,822	A→G	5.2%	H317R (CAC→CGC) ‡	ccoP‑II →	cbb3‑type cytochrome c oxidase subunit
RA	4,847,823	C→A	5.1%	H317Q (CAC→CAA) ‡	ccoP‑II →	cbb3‑type cytochrome c oxidase subunit
RA	4,847,875	A→T	5.2%	intergenic (+25/‑272)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,847,890	Δ1 bp	26.1%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,847,898:1	+G	22.9%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,855,152	C→T	5.7%	intergenic (+75/‑112)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,855,153	C→G	5.7%	intergenic (+76/‑111)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,855,154	A→G	5.7%	intergenic (+77/‑110)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,857,452	G→T	26.1%	intergenic (‑129/+168)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,857,453	A→T	25.8%	intergenic (‑130/+167)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,857,454	A→C	39.7%	intergenic (‑131/+166)	recR ← / ← ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
RA	4,863,035	G→C	5.4%	G31A (GGG→GCG)	PP_4273 →	MerR family transcriptional regulator
RA	4,863,038	G→C	5.4%	R32P (CGC→CCC)	PP_4273 →	MerR family transcriptional regulator
RA	4,866,177	A→T	10.2%	intergenic (‑134/+103)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,866,187	A→G	12.9%	intergenic (‑144/+93)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,891,159	A→G	10.0%	intergenic (+44/+79)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,160	T→A	9.8%	intergenic (+45/+78)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,162	A→T	10.3%	intergenic (+47/+76)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,168	T→A	10.6%	intergenic (+53/+70)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,169	G→C	9.4%	intergenic (+54/+69)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,171	C→T	8.4%	intergenic (+56/+67)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,173	G→C	9.2%	intergenic (+58/+65)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,175	A→G	8.6%	intergenic (+60/+63)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,177	G→C	8.6%	intergenic (+62/+61)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,178	T→A	8.5%	intergenic (+63/+60)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,184	A→T	11.2%	intergenic (+69/+54)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,186	T→A	11.1%	intergenic (+71/+52)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,891,187	C→T	10.4%	intergenic (+72/+51)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,894,579	T→G	5.8%	intergenic (+31/‑122)	hyi → / → glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
RA	4,898,610	C→G	8.2%	intergenic (+91/‑117)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,898,635	A→T	5.3%	intergenic (+116/‑92)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,898,636	A→T	5.2%	intergenic (+117/‑91)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,898,637	A→T	5.4%	intergenic (+118/‑90)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,901,393	T→C	8.8%	intergenic (+32/‑176)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,416	T→C	5.6%	intergenic (+55/‑153)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,419	G→A	5.7%	intergenic (+58/‑150)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,901,439	G→A	8.8%	intergenic (+78/‑130)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,905,059	A→G	13.5%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,063	G→A	12.3%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,064	T→C	12.4%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,068	C→T	12.6%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,938,863	A→C	11.0%	W194G (TGG→GGG)	flhF ←	flagellar biosynthesis protein FlhF
RA	4,955,966	T→G	15.0%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,955,967	C→A	10.8%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,963,588	T→G	5.2%	M36L (ATG→CTG)	fliG ←	flagellar motor switch protein
RA	4,991,045	C→G	5.3%	P97R (CCG→CGG)	flgA →	flagella basal body P‑ring formation protein
RA	5,000,519	C→G	6.6%	R396G (CGC→GGC) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	5,000,520	G→C	6.0%	R396P (CGC→CCC) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	5,000,521	C→G	6.0%	R396R (CGC→CGG) ‡	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	5,020,779	A→G	6.9%	intergenic (‑45/+189)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,020,784	T→A	6.7%	intergenic (‑50/+184)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,020,785	C→G	6.7%	intergenic (‑51/+183)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,020,786	T→A	6.5%	intergenic (‑52/+182)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,020,791	C→T	6.7%	intergenic (‑57/+177)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,020,909	A→T	5.7%	intergenic (‑175/+59)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,020,910	A→T	5.5%	intergenic (‑176/+58)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,033,902	G→A	6.0%	K391K (AAG→AAA)	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,035,745	A→G	7.7%	intergenic (+34/‑461)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,035,748	C→T	7.6%	intergenic (+37/‑458)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,082,231	G→T	5.7%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,082,234	A→C	5.9%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,084,123	T→A	8.0%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,084,126	T→A	8.0%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,084,378	G→A	6.7%	intergenic (‑3/+72)	PP_t55 ← / ← PP_t54	tRNA‑Arg/tRNA‑Arg
RA	5,084,426	G→T	7.2%	intergenic (‑51/+24)	PP_t55 ← / ← PP_t54	tRNA‑Arg/tRNA‑Arg
RA	5,089,628	G→C	9.8%	intergenic (‑366/+19)	alaS ← / ← astE	alanine‑‑tRNA ligase/succinylglutamate desuccinylase
RA	5,089,637	G→C	6.4%	intergenic (‑375/+10)	alaS ← / ← astE	alanine‑‑tRNA ligase/succinylglutamate desuccinylase
RA	5,097,571	G→C	6.3%	intergenic (‑270/+67)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,097,572	T→C	6.2%	intergenic (‑271/+66)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,097,573	G→A	6.3%	intergenic (‑272/+65)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,097,574	G→C	6.4%	intergenic (‑273/+64)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,101,286	A→C	7.3%	P159P (CCT→CCG)	argT ←	lysine/arginine/ornithine ABC transporter substrate‑binding protein
RA	5,102,237	A→C	6.4%	intergenic (+231/+61)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,244	A→C	9.1%	intergenic (+238/+54)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,102,247	G→C	5.9%	intergenic (+241/+51)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,104,932	T→G	10.0%	intergenic (+21/+132)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,104,984	A→C	5.5%	intergenic (+73/+80)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,105,035	A→G	7.5%	intergenic (+124/+29)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,105,036	A→T	8.0%	intergenic (+125/+28)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,105,037	C→T	7.3%	intergenic (+126/+27)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,108,085	A→T	5.5%	intergenic (+20/‑170)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,108,087	A→T	5.3%	intergenic (+22/‑168)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,121,497	T→G	5.7%	L29R (CTG→CGG)	PP_4502 →	hypothetical protein
RA	5,123,192	T→G	5.8%	intergenic (+27/‑32)	PP_4504 → / → PP_4505	hypothetical protein/sensor histidine kinase
RA	5,123,193	C→T	5.9%	intergenic (+28/‑31)	PP_4504 → / → PP_4505	hypothetical protein/sensor histidine kinase
RA	5,123,194	A→G	6.1%	intergenic (+29/‑30)	PP_4504 → / → PP_4505	hypothetical protein/sensor histidine kinase
RA	5,123,195	C→A	6.4%	intergenic (+30/‑29)	PP_4504 → / → PP_4505	hypothetical protein/sensor histidine kinase
RA	5,130,096	C→A	5.8%	intergenic (+73/‑109)	PP_4511 → / → PP_4512	AraC family transcriptional regulator/DMT superfamily permease
RA	5,139,983	T→A	5.9%	intergenic (‑47/+18)	PP_4520 ← / ← PP_4521	hypothetical protein/aerotaxis receptor
RA	5,139,984	T→A	6.0%	intergenic (‑48/+17)	PP_4520 ← / ← PP_4521	hypothetical protein/aerotaxis receptor
RA	5,139,985	T→A	6.0%	intergenic (‑49/+16)	PP_4520 ← / ← PP_4521	hypothetical protein/aerotaxis receptor
RA	5,153,211	T→A	5.2%	intergenic (+17/+56)	mscMB → / ← PP_5695	miniconductance mechanosensitive channel protein/hypothetical protein
RA	5,154,433	C→G	5.9%	intergenic (‑422/+26)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,154,434	T→G	6.3%	intergenic (‑423/+25)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,154,437	C→A	5.8%	intergenic (‑426/+22)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,154,438	C→G	5.7%	intergenic (‑427/+21)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,154,441	C→T	5.7%	intergenic (‑430/+18)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,167,528	T→G	10.5%	intergenic (+54/+147)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,167,593	T→G	7.2%	intergenic (+119/+82)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,167,595	T→A	9.7%	intergenic (+121/+80)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,167,619	C→G	6.9%	intergenic (+145/+56)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,177,302	T→C	5.0%	T219A (ACC→GCC)	fadD‑I ←	long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,241	T→C	21.7%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,244	G→C	21.4%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,245	G→C	21.4%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,178,248	G→A	21.8%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,185,009	C→G	8.3%	intergenic (‑240/‑43)	PP_4557 ← / → PP_4558	hypothetical protein/GNAT family acetyltransferase
RA	5,187,056	G→T	11.0%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,062	T→G	16.6%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,063	C→A	15.1%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,187,069	A→C	9.0%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,197,756	T→G	7.4%	intergenic (+140/‑62)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,197,771	T→A	6.1%	intergenic (+155/‑47)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,197,772	T→A	7.4%	intergenic (+156/‑46)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,199,884	T→G	10.5%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,199,885	C→A	10.5%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,204,642	G→C	6.9%	intergenic (+20/+53)	PP_4579 → / ← PP_4580	LysR family transcriptional regulator/hypothetical protein
JC	5,206,565	Δ98 bp	17.8%	intergenic (‑54/‑29)	PP_4582 ← / → PP_4583	membrane protein/putative Peptidase
RA	5,217,484	A→G	9.0%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,485	C→A	8.6%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,488	T→G	9.4%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,217,489	C→T	9.2%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,223,232	T→A	5.1%	S95T (TCG→ACG)	PP_4598 →	membrane protein
RA	5,234,176	G→A	9.6%	intergenic (‑121/+55)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,188	Δ1 bp	13.6%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,192	C→G	14.0%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,195	C→G	14.1%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,234,198:1	+C	14.1%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,244,881	G→A	7.9%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,244,886	T→C	8.5%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,269,287:1	+T	6.7%	intergenic (‑44/+40)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,269,290	T→G	6.5%	intergenic (‑47/+37)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,269,293	C→A	6.7%	intergenic (‑50/+34)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,269,296	Δ1 bp	6.3%	intergenic (‑53/+31)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,273,948	T→A	5.6%	intergenic (+19/+17)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,273,949	T→A	5.6%	intergenic (+20/+16)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,279,060	C→A	10.0%	intergenic (+85/+21)	rlmG → / ← PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
RA	5,293,407	T→A	5.1%	intergenic (‑91/+93)	PP_4660 ← / ← mdaB	LysR family transcriptional regulator/drug activity modulator B
RA	5,293,444	T→A	8.4%	intergenic (‑128/+56)	PP_4660 ← / ← mdaB	LysR family transcriptional regulator/drug activity modulator B
RA	5,294,586	A→T	5.3%	L246H (CTC→CAC)	PP_4663 ←	transmembrane protein
RA	5,307,654	G→A	5.0%	A372A (GCC→GCT)	recB ←	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
RA	5,318,273	C→G	9.1%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,318,276	C→G	9.3%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,334,393	T→A	5.2%	L10Q (CTG→CAG)	PP_4690 →	Rieske 2Fe‑2S family protein
RA	5,338,661	C→A	5.3%	L32M (CTG→ATG) ‡	PP_4695 →	two‑component system sensor histidine kinase
RA	5,338,663	G→C	5.2%	L32L (CTG→CTC) ‡	PP_4695 →	two‑component system sensor histidine kinase
RA	5,338,665	T→G	5.2%	I33S (ATC→AGC)	PP_4695 →	two‑component system sensor histidine kinase
RA	5,343,047	C→G	6.5%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,343,050	C→G	6.4%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,349,464	C→G	17.1%	intergenic (+42/‑136)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,468	C→T	19.6%	intergenic (+46/‑132)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,477	A→G	20.4%	intergenic (+55/‑123)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,481	C→G	22.5%	intergenic (+59/‑119)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,486	Δ1 bp	14.8%	intergenic (+64/‑114)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,349,487	Δ1 bp	15.0%	intergenic (+65/‑113)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,366,068	A→T	5.7%	intergenic (‑78/+23)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,366,069	A→T	5.9%	intergenic (‑79/+22)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,385,159	C→T	5.6%	intergenic (+73/+35)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,385,160	G→T	5.5%	intergenic (+74/+34)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,385,161	A→C	5.7%	intergenic (+75/+33)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,385,162	A→G	5.4%	intergenic (+76/+32)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,386,264	T→C	5.3%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,386,265	T→A	5.3%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,386,266	G→A	5.3%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,435,389	A→G	7.0%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,393	A→G	7.1%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,394:1	+A	7.6%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,401	Δ1 bp	7.1%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,403	C→T	7.1%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,435,407	C→T	7.0%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,451,277	A→C	13.0%	N142T (AAC→ACC)	thiE →	thiamine‑phosphate synthase
RA	5,451,286	T→G	16.7%	L145R (CTG→CGG)	thiE →	thiamine‑phosphate synthase
RA	5,451,289	T→G	13.0%	L146R (CTC→CGC)	thiE →	thiamine‑phosphate synthase
RA	5,451,295	A→C	11.3%	Q148P (CAG→CCG)	thiE →	thiamine‑phosphate synthase
RA	5,456,609	A→G	7.2%	E48G (GAG→GGG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,456,613	C→G	7.1%	L49L (CTC→CTG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,456,617	C→T	7.5%	P51S (CCG→TCG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,463,889:1	+A	8.2%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,463,895	Δ1 bp	8.4%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,464,557	T→G	7.1%	intergenic (+18/‑22)	PP_4795 → / → holA	lipoprotein/DNA polymerase III subunit delta
RA	5,467,258	G→A	5.2%	D401N (GAT→AAT) ‡	PP_4798 →	membrane‑bound lytic murein transglycosylase
RA	5,467,259	A→T	5.3%	D401V (GAT→GTT) ‡	PP_4798 →	membrane‑bound lytic murein transglycosylase
RA	5,467,260	T→C	5.3%	D401D (GAT→GAC) ‡	PP_4798 →	membrane‑bound lytic murein transglycosylase
RA	5,467,390	T→G	5.0%	intergenic (+16/+18)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,477,153	T→A	5.3%	K95M (AAG→ATG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,477,154	T→A	5.2%	K95* (AAG→TAG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,477,875	T→A	5.0%	Y226F (TAT→TTT) ‡	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,477,876	A→C	5.9%	Y226D (TAT→GAT) ‡	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,477,879	G→T	5.1%	L225I (CTA→ATA)	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,477,880	T→A	5.4%	E224D (GAA→GAT)	nadD ←	nicotinate‑nucleotide adenylyltransferase
RA	5,490,135	T→G	11.2%	intergenic (+44/‑103)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,147	A→G	28.6%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,150	A→G	33.6%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,151	T→C	32.5%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,156	G→A	33.5%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,159	T→C	37.0%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,164	G→A	29.7%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,165	C→T	28.1%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,168	C→T	29.0%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,490,181	G→C	9.3%	intergenic (+90/‑57)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,496,487	G→A	5.9%	intergenic (‑26/+26)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,496,489	C→G	5.9%	intergenic (‑28/+24)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,496,491	T→C	5.9%	intergenic (‑30/+22)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,506,403	T→A	5.8%	intergenic (+17/‑202)	PP_4834 → / → PP_4835	SPFH domain‑containing protein/hypothetical protein
RA	5,506,404	T→A	5.5%	intergenic (+18/‑201)	PP_4834 → / → PP_4835	SPFH domain‑containing protein/hypothetical protein
RA	5,514,446	G→C	5.2%	A352P (GCC→CCC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,514,455	A→T	5.0%	S355C (AGC→TGC)	urtA →	urea ABC transporter substrate‑binding protein
RA	5,514,893	A→C	8.2%	Q32P (CAG→CCG)	urtB →	urea ABC transporter permease
RA	5,514,902	T→G	8.7%	L35R (CTG→CGG)	urtB →	urea ABC transporter permease
RA	5,514,905	T→G	5.2%	L36R (CTC→CGC)	urtB →	urea ABC transporter permease
RA	5,523,550	A→T	5.1%	C10S (TGC→AGC)	PP_4850 ←	membrane protein
RA	5,523,731	T→A	6.5%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,523,732	T→A	6.8%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,523,733	T→A	6.8%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,527,788	T→A	5.4%	intergenic (+25/+15)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,527,789	T→A	5.4%	intergenic (+26/+14)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,527,790	T→A	5.3%	intergenic (+27/+13)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,527,791	T→A	5.4%	intergenic (+28/+12)	PP_4856 → / ← yhjG	Dps family ferritin/protein YhjG
RA	5,534,357	C→G	9.4%	intergenic (‑574/+20)	ydfG ← / ← livF‑II	bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/malonic semialdehyde reductase/ABC transporter ATP‑binding protein
RA	5,542,055	A→G	7.0%	intergenic (+35/+68)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,058	A→T	13.8%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,059	G→C	6.8%	intergenic (+39/+64)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,064	A→G	7.9%	intergenic (+44/+59)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,065	A→G	8.0%	intergenic (+45/+58)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,066	C→T	7.0%	intergenic (+46/+57)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,067	C→T	6.9%	intergenic (+47/+56)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,072	G→C	10.3%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,073	A→T	7.3%	intergenic (+53/+50)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,542,076	C→T	6.9%	intergenic (+56/+47)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,543,529	T→G	6.9%	intergenic (+22/+99)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,543,530	T→A	5.8%	intergenic (+23/+98)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,543,531	C→A	5.3%	intergenic (+24/+97)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,543,568	G→C	5.3%	intergenic (+61/+60)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,543,571	A→T	5.3%	intergenic (+64/+57)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,554,602	T→A	7.0%	intergenic (+18/‑154)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,554,603	T→A	7.4%	intergenic (+19/‑153)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,557,910	T→G	11.0%	intergenic (+576/+85)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,557,912	C→A	8.8%	intergenic (+578/+83)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,560,601	T→A	7.6%	intergenic (‑80/+94)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,562,785	A→C	11.0%	intergenic (‑156/+175)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,562,922	T→G	5.5%	intergenic (‑293/+38)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,563,372	C→A	6.6%	R294L (CGT→CTT)	purA ←	adenylosuccinate synthetase
RA	5,563,375	T→G	6.4%	K293T (AAG→ACG)	purA ←	adenylosuccinate synthetase
RA	5,571,413	T→A	7.7%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,571,416	T→A	7.5%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,587,560	A→C	5.3%	intergenic (+137/+30)	PP_4910 → / ← PP_4911	hypothetical protein/hypothetical protein
RA	5,613,300	G→C	5.5%	intergenic (‑162/+26)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,619,703	A→C	6.1%	I273M (ATT→ATG)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,619,706	G→T	5.9%	A272A (GCC→GCA)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,639,457	T→G	6.3%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,639,458	C→A	6.3%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,646,455	C→G	6.0%	S373C (TCC→TGC)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,646,460	C→G	6.2%	Q375E (CAG→GAG)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,648,247	T→C	6.1%	intergenic (+32/‑91)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,261	G→A	11.7%	intergenic (+46/‑77)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,262	C→T	11.2%	intergenic (+47/‑76)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,263	A→G	11.9%	intergenic (+48/‑75)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,267	A→C	11.7%	intergenic (+52/‑71)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,270	G→T	11.8%	intergenic (+55/‑68)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,274	C→T	11.7%	intergenic (+59/‑64)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,275	A→G	11.7%	intergenic (+60/‑63)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,276	T→C	11.6%	intergenic (+61/‑62)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,648,290	G→A	6.5%	intergenic (+75/‑48)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,653,980	G→A	5.3%	A29V (GCG→GTG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,653,981	C→G	5.3%	A29P (GCG→CCG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,653,982	C→G	5.3%	Q28H (CAG→CAC) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,653,983	T→C	5.2%	Q28R (CAG→CGG) ‡	ygjP ←	metal‑dependent hydrolase
RA	5,656,374	T→G	6.2%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,656,377	C→A	6.1%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,657,957	A→C	11.4%	intergenic (‑58/+103)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,959	G→A	7.6%	intergenic (‑60/+101)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,960	T→G	8.1%	intergenic (‑61/+100)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,963	A→T	11.4%	intergenic (‑64/+97)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,965	T→C	8.3%	intergenic (‑66/+95)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,966	G→A	7.8%	intergenic (‑67/+94)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,968	A→T	9.6%	intergenic (‑69/+92)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,971	C→A	8.0%	intergenic (‑72/+89)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,972	T→C	9.9%	intergenic (‑73/+88)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,660,626:1	+A	14.7%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,631	T→G	16.9%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,636	C→A	17.6%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,641	Δ1 bp	14.3%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,665,182	G→T	8.8%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,665,185	A→C	9.0%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,672,258	G→T	7.0%	intergenic (+36/+35)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,672,259	A→C	6.1%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,686,426	T→G	14.2%	intergenic (‑143/+65)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,686,427	G→C	10.4%	intergenic (‑144/+64)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,686,428	C→A	8.6%	intergenic (‑145/+63)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,701,589	A→G	8.6%	intergenic (+36/‑176)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,591	C→T	8.3%	intergenic (+38/‑174)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,597	Δ1 bp	8.6%	intergenic (+44/‑168)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,600	T→G	9.3%	intergenic (+47/‑165)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,603	A→T	8.9%	intergenic (+50/‑162)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,604	A→T	9.4%	intergenic (+51/‑161)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,607	C→A	9.1%	intergenic (+54/‑158)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,608:1	+T	10.1%	intergenic (+55/‑157)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,615	A→G	9.8%	intergenic (+62/‑150)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,701,617	C→T	10.1%	intergenic (+64/‑148)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,703,749	T→C	10.5%	intergenic (+34/‑133)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,703,772	T→C	8.5%	intergenic (+57/‑110)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,703,773	T→A	6.4%	intergenic (+58/‑109)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,703,777	C→G	8.2%	intergenic (+62/‑105)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,703,786	A→G	8.6%	intergenic (+71/‑96)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,703,788	C→G	7.0%	intergenic (+73/‑94)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,709,540	G→A	5.0%	intergenic (+60/+52)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,709,545	G→C	5.0%	intergenic (+65/+47)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,709,548	C→A	5.7%	intergenic (+68/+44)	PP_5006 → / ← PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
RA	5,729,286	T→A	11.5%	intergenic (‑183/+111)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,729,306	T→G	15.2%	intergenic (‑203/+91)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,729,310	A→T	12.2%	intergenic (‑207/+87)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,729,313	A→T	10.2%	intergenic (‑210/+84)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,731,809:1	+G	7.1%	coding (162/2574 nt)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,731,814	Δ1 bp	6.8%	coding (157/2574 nt)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,739,027	T→G	6.7%	intergenic (‑48/+109)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,739,028	G→C	5.1%	intergenic (‑49/+108)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,739,061	A→C	12.3%	intergenic (‑82/+75)	proY ← / ← hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
RA	5,745,472	T→G	26.0%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,475	A→T	21.4%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,476	A→T	23.6%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,479	C→A	20.5%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,489	T→C	13.7%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,746,895	C→T	5.1%	E88E (GAG→GAA)	PP_5039 ←	hypothetical protein
RA	5,746,900	A→G	5.4%	F87L (TTC→CTC)	PP_5039 ←	hypothetical protein
RA	5,746,905	C→A	5.4%	R85L (CGC→CTC) ‡	PP_5039 ←	hypothetical protein
RA	5,746,906	G→C	5.1%	R85G (CGC→GGC) ‡	PP_5039 ←	hypothetical protein
RA	5,748,354	A→G	11.1%	intergenic (‑182/+65)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,355	C→T	11.1%	intergenic (‑183/+64)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,356	A→C	15.1%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,357	G→T	11.4%	intergenic (‑185/+62)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,365	C→T	16.4%	intergenic (‑193/+54)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,367	T→C	15.6%	intergenic (‑195/+52)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,368	G→A	15.3%	intergenic (‑196/+51)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,370	A→G	16.1%	intergenic (‑198/+49)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,378	A→C	12.6%	intergenic (‑206/+41)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,379	G→T	10.9%	intergenic (‑207/+40)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,380	A→G	10.6%	intergenic (‑208/+39)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,381	C→T	10.2%	intergenic (‑209/+38)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,755,403	C→T	6.9%	V389M (GTG→ATG)	thiI ←	tRNA sulfurtransferase
RA	5,755,404	A→G	6.9%	H388H (CAT→CAC)	thiI ←	tRNA sulfurtransferase
RA	5,755,435	A→T	5.2%	L378H (CTT→CAT)	thiI ←	tRNA sulfurtransferase
RA	5,756,724	G→T	11.9%	intergenic (‑157/‑314)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,730	A→G	11.8%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,734	G→T	11.7%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,735	G→T	11.6%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,740	A→C	11.4%	intergenic (‑173/‑298)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,741	A→C	12.2%	intergenic (‑174/‑297)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,745	C→T	11.1%	intergenic (‑178/‑293)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,756,751	A→C	10.1%	intergenic (‑184/‑287)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,758,490	T→G	6.8%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,758,491	C→A	6.9%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,764,524	A→C	5.9%	intergenic (+128/+28)	trmL → / ← secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
RA	5,767,507	G→A	5.2%	intergenic (+18/‑123)	gpmI → / → PP_5057	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/M23/M37 family peptidase
RA	5,767,508	T→A	5.3%	intergenic (+19/‑122)	gpmI → / → PP_5057	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/M23/M37 family peptidase
RA	5,767,509	T→C	5.3%	intergenic (+20/‑121)	gpmI → / → PP_5057	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/M23/M37 family peptidase
RA	5,782,406	G→T	5.4%	intergenic (+20/+23)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,782,407	C→G	5.2%	intergenic (+21/+22)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,782,408	A→C	5.5%	intergenic (+22/+21)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,794,026	T→G	5.4%	C60G (TGC→GGC) ‡	ynfM →	efflux transporter
RA	5,794,027	G→C	5.5%	C60S (TGC→TCC) ‡	ynfM →	efflux transporter
RA	5,794,028	C→A	5.7%	C60* (TGC→TGA) ‡	ynfM →	efflux transporter
RA	5,795,148	A→T	6.4%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,155	A→G	6.3%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,156	C→G	6.2%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,157	C→T	6.2%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,795,164	A→T	5.9%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,812,989	A→G	7.1%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,990	T→C	7.9%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,991	G→A	7.3%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,812,992	C→T	7.5%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,820,536	C→T	5.8%	intergenic (+15/+76)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,541	G→T	7.6%	intergenic (+20/+71)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,544	A→C	7.7%	intergenic (+23/+68)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,820,549	A→G	7.3%	intergenic (+28/+63)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,849,117	A→G	5.0%	D245G (GAC→GGC)	PP_5122 →	GMC family oxidoreductase
RA	5,849,120	C→T	5.1%	A246V (GCC→GTC)	PP_5122 →	GMC family oxidoreductase
RA	5,863,910	T→A	10.2%	intergenic (+83/+55)	PP_5134 → / ← PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
RA	5,871,701	G→T	6.7%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,871,702	A→C	6.9%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,875,328	T→G	8.2%	intergenic (+84/+50)	PP_5144 → / ← ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
RA	5,877,026	T→A	5.5%	D211V (GAC→GTC)	ptsP ←	phosphoenolpyruvate‑dependent regulator
RA	5,882,009	T→A	6.5%	intergenic (+26/+79)	rpiA → / ← PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
RA	5,882,025	G→C	8.3%	intergenic (+42/+63)	rpiA → / ← PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
RA	5,887,704	C→A	5.0%	intergenic (+30/+18)	serA → / ← PP_5156	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase/hypothetical protein
RA	5,889,985	T→G	5.1%	A53A (GCA→GCC)	PP_5159 ←	hypothetical protein
RA	5,892,061	T→G	8.6%	intergenic (‑41/‑89)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,892,064	C→T	8.3%	intergenic (‑44/‑86)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,892,065	G→C	8.3%	intergenic (‑45/‑85)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,892,066	A→G	8.1%	intergenic (‑46/‑84)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,892,069	C→A	8.1%	intergenic (‑49/‑81)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,902,775	A→G	17.5%	intergenic (‑170/+64)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,778	G→A	19.1%	intergenic (‑173/+61)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,783	C→G	21.0%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,784	G→C	19.3%	intergenic (‑179/+55)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,787	G→C	21.1%	intergenic (‑182/+52)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,788	C→G	19.6%	intergenic (‑183/+51)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,793	T→C	21.1%	intergenic (‑188/+46)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,902,796	C→T	20.7%	intergenic (‑191/+43)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,908,169	G→T	12.2%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,908,170	A→C	14.1%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,908,805	T→A	7.3%	intergenic (+56/+51)	PP_5176 → / ← spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
RA	5,908,823	T→G	12.1%	intergenic (+74/+33)	PP_5176 → / ← spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
RA	5,919,129	C→T	6.5%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,919,131	C→G	6.4%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,919,133	A→G	6.5%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,932,952	C→A	12.3%	intergenic (‑53/+100)	PP_5195 ← / ← fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
RA	5,932,960	T→A	10.2%	intergenic (‑61/+92)	PP_5195 ← / ← fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
RA	5,953,687	T→A	5.7%	intergenic (‑63/+19)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,953,688	T→A	5.7%	intergenic (‑64/+18)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,974,735	G→A	7.7%	L522L (CTG→TTG)	PP_5236 ←	hypothetical protein
RA	5,974,738	T→A	6.6%	N521Y (AAC→TAC)	PP_5236 ←	hypothetical protein
RA	5,974,739	G→C	6.6%	Y520* (TAC→TAG) ‡	PP_5236 ←	hypothetical protein
RA	5,974,740	T→A	6.8%	Y520F (TAC→TTC) ‡	PP_5236 ←	hypothetical protein
RA	5,974,743	T→C	6.7%	K519R (AAG→AGG)	PP_5236 ←	hypothetical protein
RA	5,985,184	A→G	7.0%	Q275R (CAG→CGG) ‡	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,985,185	G→C	7.0%	Q275H (CAG→CAC) ‡	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,985,186	C→T	7.0%	R276W (CGG→TGG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,989,441	T→C	18.3%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,447	G→A	18.7%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,449	T→C	18.1%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,452	G→A	18.3%	intergenic (+43/+46)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,454	T→C	18.9%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,989,460	G→A	18.4%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,993,814	G→A	27.0%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,824	T→C	26.5%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,829	C→T	25.1%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,830	G→T	25.6%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,831	C→T	25.3%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,834	A→G	25.0%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,840	G→C	26.3%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,842	C→G	27.0%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,845	C→T	26.6%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,849	C→G	28.7%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,853	C→T	28.5%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,855	C→T	27.9%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,894	C→A	28.6%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,899	C→T	30.4%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,900	A→G	30.4%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,910	T→C	33.1%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,993,916	Δ1 bp	32.6%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	6,002,194:1	+G	9.7%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,002,199	Δ1 bp	9.4%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,009,992	T→G	6.5%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,009,999	G→C	10.1%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,002	A→T	10.2%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,005	G→C	11.1%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,010,012	C→A	7.7%	intergenic (+45/‑131)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,011,580	A→C	6.2%	intergenic (+43/+56)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,581	C→G	5.6%	intergenic (+44/+55)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,582	A→T	6.1%	intergenic (+45/+54)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,583	G→A	6.1%	intergenic (+46/+53)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,584	G→T	5.7%	intergenic (+47/+52)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,587	A→C	6.1%	intergenic (+50/+49)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,588	T→C	5.7%	intergenic (+51/+48)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,590	C→G	5.8%	intergenic (+53/+46)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,011,591	G→T	5.8%	intergenic (+54/+45)	ydcJ → / ← PP_5261	metalloprotein/LysR family transcriptional regulator
RA	6,014,144:1	+G	23.8%	intergenic (+36/+46)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,148	T→C	17.1%	intergenic (+40/+42)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,149	T→C	16.8%	intergenic (+41/+41)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,154	G→A	17.0%	intergenic (+46/+36)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,014,155	G→A	16.8%	intergenic (+47/+35)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,018,841	G→A	24.5%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,843	A→G	25.2%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,850	G→C	24.4%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,851	T→G	28.6%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,852	C→T	24.4%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,857	A→G	23.4%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,858	C→A	24.2%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,859	G→C	24.4%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,866	C→T	23.5%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,018,868	T→C	23.7%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,026,705	T→G	8.3%	intergenic (‑51/‑93)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,026,706	C→A	8.4%	intergenic (‑52/‑92)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,028,164	G→A	10.9%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,028,165	T→C	10.4%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,037,790	C→T	7.4%	intergenic (+49/+87)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,793	Δ1 bp	6.9%	intergenic (+52/+84)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,794	C→A	6.5%	intergenic (+53/+83)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,798	G→C	8.2%	intergenic (+57/+79)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,800:1	+G	6.8%	intergenic (+59/+77)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,802	T→C	6.8%	intergenic (+61/+75)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,037,805	A→G	7.7%	intergenic (+64/+72)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,045,799	T→A	5.3%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,048,671	T→A	7.3%	intergenic (+18/+16)	gmk → / ← PP_5297	deoxyguanylate kinase/guanylate kinase/amino acid transporter
RA	6,054,447	A→T	6.1%	K102* (AAG→TAG) ‡	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,054,448	A→T	6.3%	K102M (AAG→ATG) ‡	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,055,774	T→G	20.2%	L544R (CTG→CGG)	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,076,888	C→G	6.1%	L214F (TTG→TTC)	pstB‑II ←	phosphate ABC transporter ATP‑binding protein
RA	6,081,096	G→T	5.2%	G157G (GGC→GGA)	PP_5328 ←	phosphate ABC transporter permease
RA	6,081,100	T→A	5.1%	N156I (AAT→ATT)	PP_5328 ←	phosphate ABC transporter permease
RA	6,082,857	A→C	11.6%	intergenic (‑154/+84)	PP_5329 ← / ← PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
RA	6,082,878	A→C	11.6%	intergenic (‑175/+63)	PP_5329 ← / ← PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
RA	6,085,993	T→A	15.3%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,085,994	T→A	13.9%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,109,764	T→C	5.4%	H567R (CAC→CGC) ‡	PP_5355 ←	sodium/proton antiporter
RA	6,109,765	G→A	6.0%	H567Y (CAC→TAC) ‡	PP_5355 ←	sodium/proton antiporter
RA	6,116,982	T→A	6.0%	H118Q (CAT→CAA)	PP_5362 →	hypothetical protein
RA	6,130,867	G→C	5.0%	L219L (CTG→CTC)	PP_5374 →	choline/carnitine/betaine transporter family protein
RA	6,131,950	C→T	5.7%	intergenic (+36/+31)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,951	A→G	5.7%	intergenic (+37/+30)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,952	T→A	7.9%	intergenic (+38/+29)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,953	C→T	5.7%	intergenic (+39/+28)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,131,954	A→G	5.6%	intergenic (+40/+27)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,134,175	C→T	8.0%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,134,178	A→T	8.2%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,134,181	A→G	8.2%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,134,191	G→T	5.1%	intergenic (+48/+19)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,136,464	A→G	6.4%	G21G (GGT→GGC)	copB‑II ←	copper resistance protein B
RA	6,171,475	G→T	5.9%	intergenic (‑229/‑451)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,171,476	T→G	5.9%	intergenic (‑230/‑450)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,171,479	C→A	5.7%	intergenic (‑233/‑447)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,171,480	A→C	6.3%	intergenic (‑234/‑446)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,178,236	T→G	5.1%	intergenic (‑150/+40)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,178,237	C→T	5.2%	intergenic (‑151/+39)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,178,238	A→G	5.1%	intergenic (‑152/+38)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,178,239	C→A	5.0%	intergenic (‑153/+37)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	82065 =	284 (1.180)	14 (0.060)	4/254	NT	6.8%	intergenic (+42/+86)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	5599167 =	120 (0.540)					intergenic (‑114/+31)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	86750 =	175 (0.720)	25 (0.120)	11/242	NT	15.8%	intergenic (‑33/+112)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	86841 =	111 (0.520)					intergenic (‑124/+21)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	= 86765	156 (0.650)	8 (0.030) +GC	3/270	NT	7.0%	intergenic (‑48/+97)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	= 1504460	59 (0.240)					intergenic (+81/‑85)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	= 174906	NA (NA)	17 (0.070)	12/264	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	205102 =	69 (0.290)	11 (0.050)	7/262	NT	14.3%	coding (10608/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	209747 =	NA (NA)					coding (15253/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	209102 =	NA (NA)	6 (0.020)	4/274	NT	100%	coding (14608/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	209737 =	0 (0.000)					coding (15243/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	277165 =	202 (0.840)	18 (0.080)	12/244	NT	10.0%	coding (3/1221 nt)	PP_0223	DszC family monooxygenase
	?	NC_002947	277234 =	144 (0.670)					intergenic (‑67/+30)	PP_0223/PP_0224	DszC family monooxygenase/DszC family monooxygenase
*	?	NC_002947	295670 =	155 (0.640)	20 (0.090)	14/262	NT	10.8%	intergenic (+17/+125)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	295789 =	183 (0.790)					intergenic (+136/+6)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
*	?	NC_002947	= 295693	157 (0.650)	29 (0.130)	11/256	NT	14.8%	intergenic (+40/+102)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	= 295764	188 (0.830)					intergenic (+111/+31)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
*	?	NC_002947	= 312731	207 (0.860)	15 (0.070)	12/246	NT	7.4%	coding (483/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312759	188 (0.870)					coding (455/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	380836 =	90 (0.370)	8 (0.040)	7/228	NT	10.1%	intergenic (+23/+86)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	380916 =	68 (0.340)					intergenic (+103/+6)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 380858	84 (0.350)	14 (0.070)	12/228	NT	16.9%	intergenic (+45/+64)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 380892	68 (0.340)					intergenic (+79/+30)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	499197 =	129 (0.530)	22 (0.110)	11/226	NT	18.5%	intergenic (+38/‑258)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	499284 =	87 (0.440)					intergenic (+125/‑171)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	= 507026	230 (0.950)	15 (0.070)	8/246	NT	6.8%	intergenic (+35/+98)	trpE/estP	anthranilate synthase component 1/esterase EstP
	?	NC_002947	= 507088	206 (0.950)					intergenic (+97/+36)	trpE/estP	anthranilate synthase component 1/esterase EstP
*	?	NC_002947	= 594784	167 (0.690)	12 (0.050)	9/252	NT	6.8%	intergenic (‑20/+107)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
	?	NC_002947	= 594847	173 (0.780)					intergenic (‑83/+44)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
*	?	NC_002947	661518 =	211 (0.870)	17 (0.070)	9/260	NT	7.4%	intergenic (+25/+102)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
	?	NC_002947	661599 =	226 (0.990)					intergenic (+106/+21)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
*	?	NC_002947	= 668084	125 (0.520)	14 (0.070)	11/226	NT	11.3%	intergenic (+45/+107)	yfhM/PP_0571	lipoprotein/membrane protein
	?	NC_002947	= 668153	116 (0.580)					intergenic (+114/+38)	yfhM/PP_0571	lipoprotein/membrane protein
*	?	NC_002947	= 699806	0 (0.000)	5 (0.020)	3/262	NT	100%	intergenic (+196/‑48)	PP_t06/PP_23SD	tRNA‑Ala/23S ribosomal RNA
	?	NC_002947	= 1332182	0 (0.000)					intergenic (+203/‑90)	PP_16SE/PP_23SE	16S ribosomal RNA/23S ribosomal RNA
*	?	NC_002947	= 735472	210 (0.870)	11 (0.050)	9/260	NT	5.1%	coding (106/174 nt)	PP_0627	hypothetical protein
	?	NC_002947	= 735511	213 (0.930)					coding (67/174 nt)	PP_0627	hypothetical protein
*	?	NC_002947	741473 =	NA (NA)	15 (0.060)	8/266	NT	5.4%	intergenic (+70/‑430)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	2074155 =	271 (1.120)					intergenic (+10/‑464)	PP_t19/PP_1846	tRNA‑Ser/group II intron‑encoding maturase
*	?	NC_002947	= 742614	NA (NA)	5 (0.020)	5/264	NT	NA	coding (712/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 1431801	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 742796	NA (NA)	6 (0.030)	4/260	NT	NA	coding (894/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 742822	NA (NA)					coding (920/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	742918 =	NA (NA)	39 (0.170)	15/262	NT	NA	coding (1016/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742948 =	NA (NA)					coding (1046/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 746964	NA (NA)	207 (0.860)	100/274	NT	94.1%	intergenic (‑88/‑706)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	= 1015874	13 (0.050)					intergenic (‑101/‑667)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
*	?	NC_002947	796828 =	196 (0.810)	8 (0.040)	7/242	NT	5.1%	intergenic (+27/‑163)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
	?	NC_002947	796898 =	122 (0.570)					intergenic (+97/‑93)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
*	?	NC_002947	850934 =	165 (0.680)	14 (0.060)	4/264	NT	10.6%	intergenic (‑514/‑291)	pcs/hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
	?	NC_002947	2535778 =	76 (0.330)					coding (25/369 nt)	PP_2219	hypothetical protein
*	?	NC_002947	867923 =	108 (0.450)	28 (0.130)	9/248	NT	17.8%	intergenic (+18/+159)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	868013 =	160 (0.730)					intergenic (+108/+69)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	= 867952	133 (0.550)	16 (0.070)	9/244	NT	10.7%	intergenic (+47/+130)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	= 867982	148 (0.690)					intergenic (+77/+100)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	= 915054	215 (0.890)	13 (0.060)	10/258	NT	6.2%	intergenic (+19/+129)	fruA/PP_0796	PTS fructose transporter subunit IIBC/hypothetical protein
	?	NC_002947	= 915159	192 (0.840)					intergenic (+124/+24)	fruA/PP_0796	PTS fructose transporter subunit IIBC/hypothetical protein
*	?	NC_002947	1015867 =	3 (0.010)	243 (1.010)	114/272	NT	69.3%	intergenic (‑94/‑674)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
	?	NC_002947	5406744 =	212 (0.880)					intergenic (+1123/+45)	PP_4743/PP_4745	hypothetical protein/transposase
*	?	NC_002947	1030219 =	187 (0.770)	8 (0.040)	7/220	NT	6.2%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1030312 =	93 (0.480)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1042745	117 (0.480)	15 (0.070)	5/228	NT	11.8%	intergenic (+38/+78)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	= 1042777	127 (0.630)					intergenic (+70/+46)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
*	?	NC_002947	1119824 =	137 (0.570)	18 (0.090)	8/224	NT	17.1%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1119900 =	63 (0.320)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	1143486 =	171 (0.710)	21 (0.100)	8/246	NT	12.0%	intergenic (‑62/+103)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
	?	NC_002947	1143575 =	154 (0.710)					intergenic (‑151/+14)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
*	?	NC_002947	1154871 =	175 (0.720)	13 (0.050)	7/270	NT	7.3%	intergenic (‑163/+94)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	1154956 =	158 (0.660)					intergenic (‑248/+9)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
*	?	NC_002947	= 1154881	171 (0.710)	10 (0.040) +C	5/272	NT	6.0%	intergenic (‑173/+84)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	2076160 =	146 (0.600)					intergenic (+120/+107)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	= 1173536	132 (0.550)	8 (0.040)	6/238	NT	6.6%	intergenic (+98/+155)	eda/leuA	KHG/KDPG aldolase/2‑isopropylmalate synthase
	?	NC_002947	= 1173609	111 (0.530)					intergenic (+171/+82)	eda/leuA	KHG/KDPG aldolase/2‑isopropylmalate synthase
*	?	NC_002947	1175699 =	215 (0.890)	14 (0.060)	7/252	NT	7.0%	intergenic (‑335/+98)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
	?	NC_002947	1175783 =	173 (0.780)					intergenic (‑419/+14)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
*	?	NC_002947	= 1251638	135 (0.560)	9 (0.040)	5/234	NT	6.5%	intergenic (+84/‑287)	PP_1087/argG	OmpA family outer membrane protein/argininosuccinate synthase
	?	NC_002947	= 1251664	143 (0.690)					intergenic (+110/‑261)	PP_1087/argG	OmpA family outer membrane protein/argininosuccinate synthase
*	?	NC_002947	= 1278219	172 (0.710)	14 (0.070)	7/244	NT	7.9%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1278278	175 (0.810)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	1303221 =	NA (NA)	34 (0.150)	15/266	NT	NA	intergenic (+125/+304)	PP_1133/PP_1134	transposase/hypothetical protein
	?	NC_002947	1303267 =	NA (NA)					intergenic (+171/+258)	PP_1133/PP_1134	transposase/hypothetical protein
*	?	NC_002947	= 1337382	240 (0.990)	9 (0.050) +37 bp	7/200	NT	5.1%	intergenic (+8/‑1248)	PP_1157/PP_1159	acetolactate synthase/membrane protein
	?	NC_002947	3812946 =	215 (0.890)					intergenic (+26/+101)	PP_3364/PP_3365	two‑component system response regulator/acetolactate synthase
*	?	NC_002947	1416346 =	238 (0.990)	19 (0.080)	11/260	NT	7.9%	coding (544/1437 nt)	PP_1232	hypothetical protein
	?	NC_002947	1416409 =	220 (0.960)					coding (481/1437 nt)	PP_1232	hypothetical protein
*	?	NC_002947	1424502 =	69 (0.290)	18 (0.100)	8/210	NT	27.3%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1424596 =	43 (0.230)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1424533	68 (0.280)	13 (0.070)	8/210	NT	21.5%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1424563	43 (0.230)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1431756 =	NA (NA)	12 (0.050)	8/268	NT	NA	coding (698/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	1431816 =	NA (NA)					coding (758/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 1431770	NA (NA)	34 (0.150)	7/264	NT	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1431801	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 1436670	265 (1.100)	16 (0.070)	10/262	NT	5.6%	coding (158/336 nt)	PP_1253	ArsR family transcriptional regulator
	?	NC_002947	= 1436695	286 (1.240)					coding (133/336 nt)	PP_1253	ArsR family transcriptional regulator
*	?	NC_002947	1440966 =	212 (0.880)	14 (0.060)	10/274	NT	6.1%	intergenic (‑47/+106)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1441059 =	219 (0.910)					intergenic (‑140/+13)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	= 1440972	212 (0.880)	19 (0.080)	7/262	NT	8.6%	intergenic (‑53/+100)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	= 1441051	202 (0.870)					intergenic (‑132/+21)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	= 1491991	79 (0.330)	25 (0.130)	14/214	NT	23.5%	intergenic (+51/+79)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	= 1492021	101 (0.540)					intergenic (+81/+49)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	1504392 =	62 (0.260)	22 (0.110)	13/228	NT	29.6%	intergenic (+13/‑153)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	1504475 =	53 (0.260)					intergenic (+96/‑70)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	= 1504414	59 (0.240)	20 (0.100)	5/228	NT	28.2%	intergenic (+35/‑131)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1504451	53 (0.260)					intergenic (+72/‑94)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	= 1536760	78 (0.320)	13 (0.070)	8/226	NT	16.4%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1536808	68 (0.340)					coding (59/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	1541221 =	232 (0.960)	13 (0.060)	6/254	NT	5.8%	intergenic (+21/‑135)	argJ/PP_1347	glutamate N‑acetyltransferase/amino acid acetyltransferase/glutathione S‑transferase family protein
	?	NC_002947	1541303 =	210 (0.940)					intergenic (+103/‑53)	argJ/PP_1347	glutamate N‑acetyltransferase/amino acid acetyltransferase/glutathione S‑transferase family protein
*	?	NC_002947	1736154 =	65 (0.270)	9 (0.050)	9/218	NT	14.2%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1736246 =	57 (0.300)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1736181	63 (0.260)	11 (0.060)	8/218	NT	17.0%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1736217	57 (0.300)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1825976	0 (0.000)	5 (0.020)	4/264	NT	100%	coding (748/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2075325	NA (NA)					coding (707/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	1836611 =	232 (0.960)	12 (0.050)	9/260	NT	5.1%	coding (499/711 nt)	yfiP	hypothetical protein
	?	NC_002947	1836643 =	231 (1.010)					coding (531/711 nt)	yfiP	hypothetical protein
*	?	NC_002947	1849125 =	0 (0.000)	258 (1.110)	128/264	NT	66.4%	coding (660/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 2184368	261 (1.120)					intergenic (+175/+93)	PP_1931/PP_5486	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1849128	0 (0.000)	223 (0.950)	108/266	NT	65.1%	coding (657/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2182694 =	239 (1.020)					intergenic (+103/‑63)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein
*	?	NC_002947	= 1904207	185 (0.770)	15 (0.070)	11/254	NT	8.7%	intergenic (+286/‑234)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	= 1904269	142 (0.630)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1904209 =	185 (0.770)	31 (0.140)	11/244	NT	17.5%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1904269 =	128 (0.600)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1911673 =	161 (0.670)	23 (0.120)	12/222	NT	18.1%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1911767 =	77 (0.390)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	= 1922716	228 (0.940)	14 (0.060)	7/264	NT	6.0%	coding (500/1083 nt)	PP_1718	EAL domain‑containing diguanylate phosphodiesterase
	?	NC_002947	= 1922746	218 (0.940)					coding (470/1083 nt)	PP_1718	EAL domain‑containing diguanylate phosphodiesterase
*	?	NC_002947	= 1972169	79 (0.330)	19 (0.100)	10/208	NT	19.8%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1972199	94 (0.510)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	1975712 =	119 (0.490)	23 (0.110)	12/234	NT	16.0%	intergenic (+14/‑252)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	1975814 =	140 (0.680)					intergenic (+116/‑150)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	= 1975731	118 (0.490)	39 (0.190)	21/234	NT	24.5%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1975793	140 (0.680)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	= 2052522	199 (0.820)	11 (0.050)	7/270	NT	5.2%	coding (491/1197 nt)	PP_1820	benzoate transport protein
	?	NC_002947	= 2052548	209 (0.880)					coding (465/1197 nt)	PP_1820	benzoate transport protein
*	?	NC_002947	2053786 =	122 (0.510)	17 (0.080)	11/240	NT	12.9%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2053877 =	123 (0.580)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2053802	122 (0.510)	12 (0.060)	4/240	NT	9.5%	intergenic (+49/+90)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	= 2053859	123 (0.580)					intergenic (+106/+33)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2055587	66 (0.270)	34 (0.190)	13/200	NT	38.2%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2055623	62 (0.350)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2060970	143 (0.590)	15 (0.070)	8/242	NT	10.9%	intergenic (+27/‑116)	aroC/PP_1831	chorismate synthase/membrane protein
	?	NC_002947	= 2061044	119 (0.560)					intergenic (+101/‑42)	aroC/PP_1831	chorismate synthase/membrane protein
*	?	NC_002947	2062792 =	181 (0.750)	9 (0.050)	3/226	NT	6.5%	intergenic (+16/+112)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2062880 =	110 (0.550)					intergenic (+104/+24)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	2064575 =	222 (0.920)	14 (0.060)	8/256	NT	6.6%	intergenic (+17/+107)	PP_1835/PP_1836	hypothetical protein/ZIP family metal transporter
	?	NC_002947	2064656 =	192 (0.850)					intergenic (+98/+26)	PP_1835/PP_1836	hypothetical protein/ZIP family metal transporter
*	?	NC_002947	2076154 =	155 (0.640)	8 (0.040)	7/238	NT	6.0%	intergenic (+114/+113)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	2076227 =	115 (0.550)					intergenic (+187/+40)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	= 2083248	118 (0.490)	20 (0.090)	12/240	NT	14.6%	intergenic (+41/+74)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 2083295	130 (0.610)					intergenic (+88/+27)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
*	?	NC_002947	2091235 =	NA (NA)	12 (0.050)	7/258	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2091297 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2091242	NA (NA)	22 (0.100)	10/258	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2091288	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	2092666 =	169 (0.700)	14 (0.060)	4/258	NT	8.5%	intergenic (+487/+431)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
	?	NC_002947	2092758 =	142 (0.620)					intergenic (+579/+339)	PP_1865/aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
*	?	NC_002947	2104952 =	113 (0.470)	26 (0.130)	13/228	NT	23.7%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2105047 =	73 (0.360)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2241911 =	159 (0.660)	9 (0.040)	6/242	NT	7.2%	intergenic (+14/+114)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	2242002 =	92 (0.430)					intergenic (+105/+23)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	= 2250136	250 (1.040)	13 (0.060)	10/256	NT	5.0%	coding (690/972 nt)	dusC	tRNA‑dihydrouridine synthase DusC
	?	NC_002947	= 2250168	256 (1.130)					coding (722/972 nt)	dusC	tRNA‑dihydrouridine synthase DusC
*	?	NC_002947	= 2263051	NA (NA)	26 (0.110)	5/258	NT	16.4%	intergenic (+114/‑278)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2263144	141 (0.580)					intergenic (+207/‑185)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
*	?	NC_002947	2300761 =	98 (0.410)	21 (0.090)	9/264	NT	13.0%	intergenic (+15/+118)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2300858 =	187 (0.800)					intergenic (+112/+21)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	= 2300790	132 (0.550)	29 (0.150)	14/226	NT	19.1%	intergenic (+44/+89)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	= 2300827	136 (0.680)					intergenic (+81/+52)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	2306488 =	162 (0.670)	10 (0.050)	8/246	NT	6.5%	intergenic (‑140/‑191)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2306573 =	140 (0.650)					intergenic (‑225/‑106)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	2308101 =	218 (0.900)	11 (0.050)	7/254	NT	5.4%	intergenic (‑194/+101)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	2308181 =	183 (0.820)					intergenic (‑274/+21)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
*	?	NC_002947	= 2315525	195 (0.810)	10 (0.040)	8/254	NT	5.2%	coding (284/1311 nt)	PP_2033	hypothetical protein
	?	NC_002947	= 2315562	182 (0.810)					coding (321/1311 nt)	PP_2033	hypothetical protein
*	?	NC_002947	2384559 =	227 (0.940)	13 (0.060)	9/268	NT	5.2%	intergenic (+22/‑68)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX
	?	NC_002947	2384601 =	248 (1.050)					intergenic (+64/‑26)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX
*	?	NC_002947	2419814 =	246 (1.020)	15 (0.070)	6/258	NT	6.3%	coding (20/198 nt)	PP_2115	hypothetical protein
	?	NC_002947	= 4027356	214 (0.940)					intergenic (‑58/+610)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	2477094 =	83 (0.340)	7 (0.040)	5/196	NT	12.5%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2477218 =	39 (0.230)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	= 2477132	69 (0.290)	9 (0.040)	4/228	NT	5.3%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 4329770	263 (1.310)					intergenic (+142/+125)	pbpG/PP_3795	murein D‑alanyl‑D‑alanine endopeptidase/hypothetical protein
*	?	NC_002947	= 2779061	188 (0.780)	14 (0.060)	9/252	NT	7.1%	intergenic (+20/+90)	calA/PP_5521	coniferyl alcohol dehydrogenase/hypothetical protein
	?	NC_002947	= 2779122	196 (0.880)					intergenic (+81/+29)	calA/PP_5521	coniferyl alcohol dehydrogenase/hypothetical protein
*	?	NC_002947	2962064 =	131 (0.540)	19 (0.090)	12/244	NT	13.5%	intergenic (+27/‑169)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
	?	NC_002947	2962151 =	126 (0.590)					intergenic (+114/‑82)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
*	?	NC_002947	= 2962078	128 (0.530)	17 (0.080)	10/244	NT	12.4%	intergenic (+41/‑155)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
	?	NC_002947	= 2962135	126 (0.590)					intergenic (+98/‑98)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
*	?	NC_002947	3073806 =	217 (0.900)	12 (0.050)	7/258	NT	6.0%	intergenic (+65/‑98)	qedH‑II/aldB‑II	quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase
	?	NC_002947	3073847 =	175 (0.770)					intergenic (+106/‑57)	qedH‑II/aldB‑II	quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase
*	?	NC_002947	3350978 =	190 (0.790)	11 (0.050)	8/272	NT	5.5%	coding (514/1371 nt)	PP_2942	two‑component system response regulator
	?	NC_002947	3351006 =	193 (0.800)					coding (486/1371 nt)	PP_2942	two‑component system response regulator
*	?	NC_002947	3593083 =	163 (0.670)	8 (0.030)	6/264	NT	5.4%	intergenic (+12/‑63)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	3593163 =	124 (0.530)					coding (18/1272 nt)	benE‑II	benzoate transport protein
*	?	NC_002947	3952906 =	76 (0.310)	15 (0.080)	10/218	NT	18.2%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3952991 =	74 (0.390)					coding (51/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3952933	75 (0.310)	8 (0.040)	5/218	NT	10.7%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3952962	74 (0.390)					coding (80/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	3973868 =	42 (0.170)	25 (0.110)	11/266	NT	18.5%	coding (1003/1179 nt)	PP_3498	transposase
	?	NC_002947	3973959 =	180 (0.770)					coding (1094/1179 nt)	PP_3498	transposase
*	?	NC_002947	4084407 =	161 (0.670)	10 (0.050)	8/226	NT	7.1%	intergenic (‑218/+166)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	4084524 =	130 (0.650)					intergenic (‑335/+49)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
*	?	NC_002947	= 4099642	219 (0.910)	21 (0.100)	12/250	NT	9.3%	intergenic (+65/+70)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	= 4099687	211 (0.960)					intergenic (+110/+25)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
*	?	NC_002947	4164076 =	109 (0.450)	21 (0.100)	13/242	NT	15.7%	intergenic (+31/‑178)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4164136 =	129 (0.600)					intergenic (+91/‑118)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4164091	115 (0.480)	10 (0.050)	4/242	NT	8.0%	intergenic (+46/‑163)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	= 4164119	129 (0.600)					intergenic (+74/‑135)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4538572	135 (0.560)	14 (0.060)	7/250	NT	10.8%	intergenic (+21/‑153)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	= 4538637	107 (0.490)					intergenic (+86/‑88)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
*	?	NC_002947	4542511 =	NA (NA)	35 (0.150)	9/264	NT	100%	coding (853/1533 nt)	PP_4025	transposase
	?	NC_002947	4542537 =	0 (0.000)					coding (879/1533 nt)	PP_4025	transposase
*	?	NC_002947	= 4556966	67 (0.280)	10 (0.050)	5/208	NT	15.5%	intergenic (+67/+114)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
	?	NC_002947	= 4557017	58 (0.320)					intergenic (+118/+63)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
*	?	NC_002947	4582816 =	220 (0.910)	23 (0.100)	12/262	NT	10.3%	intergenic (+32/+77)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
	?	NC_002947	4582856 =	189 (0.820)					intergenic (+72/+37)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
*	?	NC_002947	4591012 =	128 (0.530)	15 (0.090)	13/198	NT	21.2%	intergenic (+102/+115)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4591116 =	19 (0.110)					intergenic (+206/+11)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4652552 =	38 (0.160)	37 (0.210)	19/196	NT	46.8%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4652660 =	57 (0.330)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4652590	35 (0.140)	26 (0.150)	13/196	NT	38.8%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4652620	57 (0.330)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4813168 =	0 (0.000)	101 (0.560)	40/204	NT	63.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5993940	114 (0.630)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4813173	0 (0.000)	120 (0.540)	37/250	NT	55.8%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5993770 =	190 (0.860)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4850122 =	129 (0.530)	12 (0.060)	9/242	NT	9.7%	intergenic (+14/‑123)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
	?	NC_002947	4850215 =	109 (0.510)					intergenic (+107/‑30)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
*	?	NC_002947	= 4850137	123 (0.510)	14 (0.070)	8/242	NT	11.4%	intergenic (+29/‑108)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
	?	NC_002947	= 4850198	109 (0.510)					intergenic (+90/‑47)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
*	?	NC_002947	4875660 =	183 (0.760)	12 (0.060)	5/224	NT	8.6%	intergenic (+16/‑104)	xdhB/xdhC	xanthine dehydrogenase subunit XdhB/xanthine dehydrogenase accessory factor
	?	NC_002947	4875730 =	107 (0.540)					intergenic (+86/‑34)	xdhB/xdhC	xanthine dehydrogenase subunit XdhB/xanthine dehydrogenase accessory factor
*	?	NC_002947	4894563 =	137 (0.570)	10 (0.050)	5/220	NT	9.4%	intergenic (+15/‑138)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	4894654 =	83 (0.430)					intergenic (+106/‑47)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	4898547 =	93 (0.390)	7 (0.040)	4/220	NT	8.0%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4898626 =	86 (0.440)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	= 4898573	97 (0.400)	13 (0.070)	6/220	NT	13.7%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4898598	86 (0.440)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4901372 =	110 (0.460)	27 (0.130)	18/232	NT	21.1%	intergenic (+11/‑197)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	4901461 =	109 (0.530)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4901392	102 (0.420)	29 (0.140)	15/232	NT	22.9%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4901439	109 (0.530)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	4934781 =	228 (0.940)	13 (0.060)	7/252	NT	6.0%	coding (385/2244 nt)	cheA	chemotaxis histidine kinase CheA
	?	NC_002947	4934861 =	195 (0.880)					coding (305/2244 nt)	cheA	chemotaxis histidine kinase CheA
*	?	NC_002947	5110406 =	252 (1.040)	22 (0.100)	14/258	NT	8.8%	coding (2703/3021 nt)	ydiJ	putative oxidoreductase
	?	NC_002947	5110440 =	220 (0.970)					coding (2669/3021 nt)	ydiJ	putative oxidoreductase
*	?	NC_002947	5117556 =	216 (0.890)	13 (0.060)	8/230	NT	7.9%	intergenic (‑148/+118)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
	?	NC_002947	5117661 =	121 (0.600)					intergenic (‑253/+13)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
*	?	NC_002947	5130084 =	77 (0.320)	15 (0.080)	6/222	NT	17.6%	intergenic (+61/‑121)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5130163 =	78 (0.400)					intergenic (+140/‑42)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	= 5130109	79 (0.330)	8 (0.040)	7/222	NT	10.1%	intergenic (+86/‑96)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 5130136	78 (0.400)					intergenic (+113/‑69)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	5167567 =	102 (0.420)	19 (0.100)	10/222	NT	21.2%	intergenic (+93/+108)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5167651 =	59 (0.300)					intergenic (+177/+24)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5206576 =	100 (0.410)	16 (0.090)	8/200	NT	26.0%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5206671 =	18 (0.100)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	= 5243658	200 (0.830)	12 (0.050)	8/256	NT	5.6%	coding (173/204 nt)	PP_5701	hypothetical protein
	?	NC_002947	= 5243723	216 (0.960)					intergenic (+34/‑247)	PP_5701/PP_4616	hypothetical protein/hypothetical protein
*	?	NC_002947	5265668 =	229 (0.950)	12 (0.060)	7/246	NT	5.8%	intergenic (+34/+105)	yqeF/PP_4637	acetyl‑CoA acetyltransferase/5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase family protein
	?	NC_002947	5265739 =	183 (0.840)					intergenic (+105/+34)	yqeF/PP_4637	acetyl‑CoA acetyltransferase/5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase family protein
*	?	NC_002947	5278997 =	188 (0.780)	14 (0.060)	8/248	NT	8.8%	intergenic (+22/+84)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
	?	NC_002947	5279070 =	120 (0.550)					intergenic (+95/+11)	rlmG/PP_4649	ribosomal RNA large subunit methyltransferase G/hypothetical protein
*	?	NC_002947	5293391 =	85 (0.350)	15 (0.080)	11/214	NT	17.5%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5293485 =	75 (0.400)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5293420	90 (0.370)	12 (0.060)	5/214	NT	14.2%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5293454	75 (0.400)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	5338192 =	147 (0.610)	28 (0.130)	17/244	NT	20.3%	intergenic (+27/‑216)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	5338252 =	89 (0.410)					intergenic (+87/‑156)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
*	?	NC_002947	= 5387429	63 (0.260)	22 (0.120)	9/204	NT	29.7%	intergenic (+52/+81)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	= 5387457	57 (0.320)					intergenic (+80/+53)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	5518239 =	104 (0.430)	14 (0.070)	10/222	NT	13.3%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5518347 =	98 (0.500)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	= 5518264	102 (0.420)	21 (0.110)	11/222	NT	18.9%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5518320	98 (0.500)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	5524822 =	210 (0.870)	12 (0.050)	9/254	NT	5.6%	intergenic (‑96/‑130)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5524907 =	210 (0.940)					intergenic (‑181/‑45)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	= 5599119	89 (0.370)	14 (0.070)	6/218	NT	13.3%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5599156	112 (0.580)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5759743	251 (1.040)	13 (0.060)	8/266	NT	5.4%	coding (934/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
	?	NC_002947	= 5759779	211 (0.900)					coding (970/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
*	?	NC_002947	5764409 =	61 (0.250)	20 (0.110)	8/210	NT	33.4%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5764501 =	33 (0.180)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5764440	53 (0.220)	30 (0.160)	15/210	NT	44.9%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5764468	33 (0.180)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	5791477 =	127 (0.530)	13 (0.070)	8/226	NT	11.9%	intergenic (+15/‑116)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5791562 =	87 (0.440)					intergenic (+100/‑31)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5821876	77 (0.320)	27 (0.130)	10/238	NT	26.5%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5821903	83 (0.400)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	= 5863869	100 (0.410)	5 (0.030)	3/214	NT	5.4%	intergenic (+42/+96)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5863914	96 (0.510)					intergenic (+87/+51)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
*	?	NC_002947	= 5875294	106 (0.440)	8 (0.040)	6/216	NT	8.9%	intergenic (+50/+84)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5875329	80 (0.420)					intergenic (+85/+49)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	= 5879563	251 (1.040)	15 (0.070)	9/252	NT	6.3%	intergenic (‑50/+98)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	= 5879623	214 (0.960)					intergenic (‑110/+38)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	5881989 =	130 (0.540)	8 (0.040)	5/226	NT	6.9%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5882071 =	110 (0.550)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	= 5882012	122 (0.510)	8 (0.040)	7/226	NT	7.1%	intergenic (+29/+76)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	= 5882046	110 (0.550)					intergenic (+63/+42)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5908776 =	113 (0.470)	31 (0.150)	11/242	NT	22.1%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5908836 =	119 (0.560)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	= 5908791	113 (0.470)	17 (0.080)	12/242	NT	13.4%	intergenic (+42/+65)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5908819	119 (0.560)					intergenic (+70/+37)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	5919162 =	84 (0.350)	26 (0.140)	12/218	NT	27.7%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5919258 =	69 (0.360)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5919189	81 (0.340)	24 (0.120)	14/218	NT	26.5%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5919229	69 (0.360)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5948627	92 (0.380)	11 (0.050)	4/230	NT	10.9%	intergenic (+30/+55)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
	?	NC_002947	= 5948648	103 (0.510)					intergenic (+51/+34)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
*	?	NC_002947	= 6024275	147 (0.610)	10 (0.050)	9/228	NT	6.7%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6024305	157 (0.780)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6065460	148 (0.610)	19 (0.080)	9/254	NT	11.7%	intergenic (+91/+90)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	= 6065497	150 (0.670)					intergenic (+128/+53)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6067128	241 (1.000)	16 (0.070)	13/268	NT	6.2%	coding (581/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	= 6067169	248 (1.050)					coding (540/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
*	?	NC_002947	= 6082849	142 (0.590)	13 (0.070)	5/226	NT	8.8%	intergenic (‑146/+92)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
	?	NC_002947	= 6082901	154 (0.770)					intergenic (‑198/+40)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
*	?	NC_002947	= 6092577	194 (0.800)	13 (0.060)	10/256	NT	7.2%	intergenic (+23/‑207)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
	?	NC_002947	= 6092641	156 (0.690)					intergenic (+87/‑143)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase