mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 188,837 | C→T | R316C (CGC→TGC) | PP_0165 → | GGDEF domain‑containing protein |
| RA | 233,545 | C→T | G548G (GGC→GGT) | PP_0180 → | cytochrome c family protein |
| RA | 476,133 | A→T | Q141L (CAG→CTG) | tsaD → | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| RA | 1,011,323 | +T | intergenic (‑258/+192) | PP_0871 ← / ← SBRG_Ecoli_galM | glycine betaine/carnitine/choline ABC transporter permease/SBRG_Ecoli_galM |
| RA | 1,013,189 | C→G | C170S (TGC→TCC) | SBRG_Ecoli_galK ← | SBRG_Ecoli_galK |
| RA | 1,015,820 | A→C | intergenic (‑47/‑721) | SBRG_Ecoli_galE ← / → prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| RA | 1,163,732 | A→G | N304D (AAC→GAC) | gtsA → | mannose/glucose ABC transporter substrate‑binding protein |
| RA | 1,165,540 | C→T | L133F (CTC→TTC) | gtsC → | mannose/glucose ABC transporter permease |
| RA | 1,168,596 | G→T | intergenic (+65/‑53) | oprB‑I → / → yeaD | carbohydrate‑selective porin/glucose‑6‑phosphate 1‑epimerase |
| MC JC | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| RA | 1,652,918 | G→A | Y265Y (TAC→TAT) | oprB‑II ← | carbohydrate‑selective porin |
| RA | 1,856,513 | A→G | D203G (GAT→GGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 2,209,475 | A→T | N387I (AAC→ATC) | PP_1948 → | benzaldehyde dehydrogenase |
| RA | 2,293,757 | G→A | D350N (GAC→AAC) | pepN → | aminopeptidase N |
| RA | 2,384,391 | C→A | Q227K (CAA→AAA) | cmpX → | protein CmpX |
| RA | 4,018,201 | G→A | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,746,222 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,224 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,226 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,229 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,232 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,234 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,248 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,250 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,746,253 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 746964 | NA (NA) | 225 (0.850) | 107/290 | 1.3 | 91.8% | intergenic (‑88/‑706) | PP_0638/PP_5448 | transposase/hypothetical protein |
| ? | NC_002947 | = 1015874 | 20 (0.080) | intergenic (‑101/‑667) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 | |||||
| * | ? | NC_002947 | 1015867 = | 10 (0.040) | 285 (1.080) | 138/288 | 0.2 | 65.1% | intergenic (‑94/‑674) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | 5406744 = | 296 (1.120) | intergenic (+1123/+45) | PP_4743/PP_4745 | hypothetical protein/transposase | |||||
| * | ? | NC_002947 | 1849125 = | 2 (0.010) | 314 (1.220) | 154/280 | 0.0 | 69.5% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2184368 | 273 (1.060) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1849128 | 2 (0.010) | 233 (0.900) | 139/282 | 0.1 | 61.9% | coding (657/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 2182694 = | 285 (1.100) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||