breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	6,429	Δ1 bp	8.2%	intergenic (‑47/+42)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	6,433:1	+T	8.2%	intergenic (‑51/+38)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	26,837:1	+A	8.5%	intergenic (+33/+152)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	26,844	A→T	11.6%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	27,581	C→T	5.7%	intergenic (‑428/+18)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	27,584	A→G	6.3%	intergenic (‑431/+15)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	58,747	T→A	10.9%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	11.5%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	90,414	C→T	6.4%	intergenic (+89/+33)	PP_0079 → / ← PP_0080	transcriptional regulator/hypothetical protein
RA	95,665	A→C	8.8%	intergenic (+57/+15)	PP_0087 → / ← PP_0088	hypothetical protein/alkanal monooxygenase
RA	97,592	G→T	8.3%	intergenic (+21/+15)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,593	A→T	5.3%	intergenic (+22/+14)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,594	A→C	5.7%	intergenic (+23/+13)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	126,115	A→G	7.5%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	7.5%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	139,749	A→C	6.6%	L252R (CTG→CGG)	kinB ←	alginate biosynthesis sensor protein KinB
RA	152,157	A→T	5.2%	intergenic (‑51/+43)	PP_0143 ← / ← PP_0144	membrane protein/insulinase family metalloprotease
RA	152,158	A→T	5.2%	intergenic (‑52/+42)	PP_0143 ← / ← PP_0144	membrane protein/insulinase family metalloprotease
RA	170,838	G→T	7.2%	intergenic (+19/‑551)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,839	T→G	8.8%	intergenic (+20/‑550)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,840	C→A	6.3%	intergenic (+21/‑549)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	170,841	A→C	7.9%	intergenic (+22/‑548)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	181,805	T→C	5.1%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,943	C→T	23.8%	noncoding (52/120 nt)	PP_5SB →	5S ribosomal RNA
RA	182,034	G→A	10.3%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	10.3%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	10.4%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	195,559	C→A	28.2%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	6.0%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	6.0%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	43.4%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	19.3%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	20.8%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	25.7%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	22.0%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	10.1%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	20.3%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	6.0%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	13.7%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	5.3%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	11.1%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	19.9%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	23.4%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	10.8%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	13.5%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	233,832	A→T	6.4%	intergenic (+20/+43)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,833	C→G	6.0%	intergenic (+21/+42)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,834	A→T	6.0%	intergenic (+22/+41)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	244,785	G→A	8.5%	R154K (AGG→AAG)	algP →	transcriptional regulator AlgP
RA	244,819	A→G	6.2%	P165P (CCA→CCG)	algP →	transcriptional regulator AlgP
RA	253,348	T→C	5.2%	intergenic (‑133/+38)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,356	C→T	6.2%	intergenic (‑141/+30)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,358	A→T	6.1%	intergenic (‑143/+28)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,359	A→T	6.2%	intergenic (‑144/+27)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,361	A→G	6.2%	intergenic (‑146/+25)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	255,251	C→T	5.3%	intergenic (‑135/+28)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,256	T→C	5.1%	intergenic (‑140/+23)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,257	C→T	5.1%	intergenic (‑141/+22)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,258	A→G	5.2%	intergenic (‑142/+21)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,259	G→A	5.2%	intergenic (‑143/+20)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,264	A→G	5.0%	intergenic (‑148/+15)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	268,744	T→A	5.8%	intergenic (‑75/+25)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	268,746	G→C	6.1%	intergenic (‑77/+23)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	284,587	T→A	13.4%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,588	T→A	13.0%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	295,777	C→T	6.4%	intergenic (+124/+18)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,778	A→T	6.1%	intergenic (+125/+17)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,779	A→G	6.0%	intergenic (+126/+16)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	322,135	G→A	15.1%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,142	T→C	14.0%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,067	C→A	6.3%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,070	T→G	6.4%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	337,812	A→G	23.5%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819:1	+A	23.7%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	A→C	24.7%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	C→G	23.9%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,828	G→T	24.8%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,830	Δ1 bp	23.8%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,839	C→T	23.5%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	344,035	A→G	5.5%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,044	Δ1 bp	10.1%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,048:1	+T	9.8%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	358,054	T→A	5.3%	intergenic (+19/‑111)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,088	A→G	26.8%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	C→T	27.3%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,093	T→C	27.8%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	G→A	27.0%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,097	A→G	26.8%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,099	C→T	26.2%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	367,365	C→A	5.8%	intergenic (‑48/+26)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	367,370	T→G	7.9%	intergenic (‑53/+21)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	372,647	A→C	5.3%	intergenic (+64/‑115)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,649	C→G	6.2%	intergenic (+66/‑113)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,650	A→T	6.1%	intergenic (+67/‑112)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,652	T→A	6.4%	intergenic (+69/‑110)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,654	A→G	6.2%	intergenic (+71/‑108)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,660	C→G	6.0%	intergenic (+77/‑102)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,666	C→T	5.3%	intergenic (+83/‑96)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,668	T→A	5.2%	intergenic (+85/‑94)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,670	A→T	5.3%	intergenic (+87/‑92)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	372,671	C→G	5.4%	intergenic (+88/‑91)	dgcA → / → dgcB	dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit
RA	385,478	A→C	9.5%	intergenic (+15/+20)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,479	C→G	10.0%	intergenic (+16/+19)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	385,480	G→T	7.0%	intergenic (+17/+18)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	403,270	T→A	6.2%	intergenic (‑70/+99)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,274	G→C	5.0%	intergenic (‑74/+95)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,279	G→A	5.6%	intergenic (‑79/+90)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,280	G→C	5.6%	intergenic (‑80/+89)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,281	T→C	5.5%	intergenic (‑81/+88)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,284	C→T	5.4%	intergenic (‑84/+85)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,285	A→G	5.5%	intergenic (‑85/+84)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,288	G→A	5.3%	intergenic (‑88/+81)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,289	G→C	5.2%	intergenic (‑89/+80)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,290	T→C	5.3%	intergenic (‑90/+79)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,295	G→C	5.6%	intergenic (‑95/+74)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	403,299	T→A	5.3%	intergenic (‑99/+70)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	416,124	G→C	5.8%	D297H (GAC→CAC)	waaC →	ADP‑heptose‑‑LPS heptosyltransferase
RA	432,996	A→T	10.7%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,997	A→T	10.7%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,998	A→T	10.7%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	445,098	T→C	8.7%	intergenic (+68/‑220)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,108	A→T	13.2%	intergenic (+78/‑210)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,110	T→G	10.9%	intergenic (+80/‑208)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	445,118	G→A	9.5%	intergenic (+88/‑200)	PP_0367 → / → PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
RA	450,921	T→C	6.6%	noncoding (115/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,922	T→G	6.6%	noncoding (116/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,923	C→A	7.0%	noncoding (117/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,924	G→A	7.0%	noncoding (118/127 nt)	PP_mr05 →	RsmY ncRNA
RA	461,033	C→G	5.3%	V479L (GTG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	464,323	G→C	5.4%	H259Q (CAC→CAG) ‡	davB ←	lysine 2‑monooxygenase
RA	464,324	T→A	5.4%	H259L (CAC→CTC) ‡	davB ←	lysine 2‑monooxygenase
RA	464,325	G→C	5.3%	H259D (CAC→GAC) ‡	davB ←	lysine 2‑monooxygenase
RA	467,101	A→G	5.5%	intergenic (‑31/+22)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	467,104	C→T	6.1%	intergenic (‑34/+19)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	471,069	T→C	12.2%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,070	G→A	12.2%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	478,316	A→T	10.6%	intergenic (+61/+49)	PP_0393 → / ← cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
RA	524,339	A→G	6.9%	intergenic (+203/‑613)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,352	G→C	12.4%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,355	G→C	12.9%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,368	C→T	9.9%	intergenic (+232/‑584)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	537,582	C→G	5.6%	intergenic (+109/‑44)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	537,589	A→C	5.5%	intergenic (+116/‑37)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	546,005	G→A	5.8%	intergenic (+42/‑31)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,010	G→T	6.2%	intergenic (+47/‑26)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,011	A→T	6.0%	intergenic (+48/‑25)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,012	A→C	5.5%	intergenic (+49/‑24)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	546,017	T→C	5.4%	intergenic (+54/‑19)	rpoC → / → PP_mr08	DNA‑directed RNA polymerase subunit beta'/rpsL_psuedo ncRNA
RA	564,380:1	+A	5.9%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,385	Δ1 bp	6.0%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	571,620	G→A	6.8%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,621	T→C	6.8%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	593,437	A→C	5.6%	E391A (GAG→GCG)	PP_0503 →	MFS transporter
RA	654,401	C→A	5.6%	L115L (CTG→CTT)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	654,406	T→G	6.9%	K114Q (AAG→CAG)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	668,074	T→G	17.9%	intergenic (+35/+117)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	668,079	T→G	14.8%	intergenic (+40/+112)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	668,096	A→C	13.9%	intergenic (+57/+95)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	668,110	T→A	11.7%	intergenic (+71/+81)	yfhM → / ← PP_0571	lipoprotein/membrane protein
RA	675,590	A→T	7.3%	C38S (TGC→AGC)	PP_0577 ←	hypothetical protein
RA	675,592	C→G	7.3%	G37A (GGC→GCC)	PP_0577 ←	hypothetical protein
RA	675,594	A→T	7.4%	A36A (GCT→GCA)	PP_0577 ←	hypothetical protein
RA	697,105	A→C	7.7%	intergenic (+29/‑722)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	5.5%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,231	C→G	5.6%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,725	A→G	53.8%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	715,012:1	+T	6.2%	intergenic (+75/+2)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	715,019	Δ1 bp	6.1%	coding (478/483 nt)	PP_0607 ←	type IV pili biogenesis protein FimT
RA	725,714	G→A	5.1%	P63L (CCG→CTG)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	725,716	G→T	5.1%	H62Q (CAC→CAA)	PP_0619 ←	branched‑chain amino acid ABC transporter substrate‑binding protein
RA	727,318	C→T	6.0%	W6* (TGG→TAG) ‡	PP_0621 ←	hypothetical protein
RA	727,319	A→T	6.3%	W6R (TGG→AGG) ‡	PP_0621 ←	hypothetical protein
RA	727,320	A→G	5.9%	P5P (CCT→CCC)	PP_0621 ←	hypothetical protein
RA	743,433	G→A	5.1%	intergenic (+109/+165)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	780,559	A→C	9.0%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,561	T→A	8.9%	intergenic (‑88/+34)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,563	G→T	9.3%	intergenic (‑90/+32)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	788,584	C→A	7.0%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	A→T	7.7%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,587	A→T	8.2%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,589	T→G	9.6%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	797,512	G→A	6.0%	intergenic (+33/‑44)	PP_0682 → / → PP_0683	inner membrane protein/hypothetical protein
RA	798,665	C→A	5.6%	intergenic (+17/+10)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,666	C→G	5.8%	intergenic (+18/+9)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	798,667	T→G	8.2%	intergenic (+19/+8)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	838,006	Δ1 bp	5.9%	intergenic (‑39/+41)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,010:1	+C	5.9%	intergenic (‑43/+37)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	867,950	A→C	9.6%	intergenic (+45/+132)	PP_0750 → / ← mqo‑I	hypothetical protein/malate:quinone oxidoreductase
RA	871,188	A→T	6.5%	intergenic (+33/+42)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	871,189	G→C	6.4%	intergenic (+34/+41)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	871,190	T→A	6.7%	intergenic (+35/+40)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	871,191	G→C	6.7%	intergenic (+36/+39)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	871,192	A→T	6.7%	intergenic (+37/+38)	PP_0753 → / ← PP_0754	lipoprotein/hypothetical protein
RA	873,421	G→A	5.2%	G18S (GGC→AGC)	PP_5457 →	hypothetical protein
RA	883,866	A→C	15.5%	intergenic (+101/‑227)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	915,130	T→G	6.1%	intergenic (+95/+53)	fruA → / ← PP_0796	PTS fructose transporter subunit IIBC/hypothetical protein
RA	915,131	T→A	5.5%	intergenic (+96/+52)	fruA → / ← PP_0796	PTS fructose transporter subunit IIBC/hypothetical protein
RA	915,132	C→A	5.1%	intergenic (+97/+51)	fruA → / ← PP_0796	PTS fructose transporter subunit IIBC/hypothetical protein
RA	954,436	T→C	6.7%	L92P (CTG→CCG)	cyoE →	protoheme IX farnesyltransferase
RA	954,438	C→A	6.6%	L93I (CTC→ATC) ‡	cyoE →	protoheme IX farnesyltransferase
RA	954,439	T→G	6.6%	L93R (CTC→CGC) ‡	cyoE →	protoheme IX farnesyltransferase
RA	954,441	G→A	6.9%	G94R (GGG→AGG)	cyoE →	protoheme IX farnesyltransferase
RA	955,079	Δ1 bp	6.5%	intergenic (+30/‑283)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,083	T→A	6.6%	intergenic (+34/‑279)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,085:1	+G	6.6%	intergenic (+36/‑277)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,121	C→T	5.4%	intergenic (+72/‑241)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,154	G→A	9.2%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	T→A	9.1%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,156	T→C	10.6%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,158	C→T	10.4%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	956,586	G→T	8.0%	intergenic (+16/‑98)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,587	A→T	6.2%	intergenic (+17/‑97)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	956,588	A→C	6.4%	intergenic (+18/‑96)	alaC → / → PP_0818	aminotransferase/hypothetical protein
RA	968,878	G→T	8.7%	intergenic (‑308/+23)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	968,881	A→C	11.0%	intergenic (‑311/+20)	PP_0831 ← / ← PP_t68	hypothetical protein/tRNA‑Leu
RA	994,950	T→A	7.1%	intergenic (+26/+99)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	994,951	T→A	7.4%	intergenic (+27/+98)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	1,011,483	T→A	5.2%	intergenic (‑418/‑109)	PP_0871 ← / → prfC	glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3
RA	1,013,231	A→T	35.2%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,237	C→A	35.9%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,238	A→T	35.7%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,244	G→C	41.1%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,245	G→C	41.2%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,251	A→T	42.7%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,252	T→G	41.2%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,258	A→T	34.3%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,025,310	A→T	8.4%	intergenic (‑161/+68)	opdP ← / ← dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
RA	1,070,265	G→C	13.5%	intergenic (+62/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,268	G→C	14.0%	intergenic (+65/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,076,829	T→A	5.1%	L68Q (CTG→CAG)	mreC →	cell shape‑determining protein MreC
RA	1,104,562	G→A	5.2%	intergenic (+50/‑42)	murA → / → hisG	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase/ATP phosphoribosyltransferase
RA	1,104,563	A→T	5.2%	intergenic (+51/‑41)	murA → / → hisG	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase/ATP phosphoribosyltransferase
RA	1,111,305	T→C	5.3%	intergenic (+21/‑89)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,310	G→T	5.9%	intergenic (+26/‑84)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,313	C→G	5.8%	intergenic (+29/‑81)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,315	T→A	6.1%	intergenic (+31/‑79)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,317	C→G	5.8%	intergenic (+33/‑77)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,320	A→C	5.6%	intergenic (+36/‑74)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,126,606	A→T	7.6%	intergenic (‑55/+95)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,126,634	T→A	10.7%	intergenic (‑83/+67)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,130,144	G→T	5.1%	intergenic (‑193/+111)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,130,145	C→G	5.0%	intergenic (‑194/+110)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,130,146	A→C	5.0%	intergenic (‑195/+109)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,130,198	A→T	7.2%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,145,439	C→T	13.1%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,446	G→A	13.2%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,447	T→C	13.5%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,454	A→G	14.0%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,156,356	G→C	13.5%	intergenic (+53/‑163)	PP_1013 → / → yihS	sensor histidine kinase/aldose‑ketose isomerase
RA	1,178,757	T→A	6.5%	intergenic (+56/+38)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,758	G→T	6.5%	intergenic (+57/+37)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,759	A→C	6.3%	intergenic (+58/+36)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,760	T→A	6.5%	intergenic (+59/+35)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,184,591	G→C	22.1%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,594	G→C	21.4%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,611	C→T	7.1%	intergenic (‑221/‑191)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,618	A→T	6.4%	intergenic (‑228/‑184)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,194,920	A→G	5.7%	Q351Q (CAA→CAG)	uxpA →	lipoprotein UxpA
RA	1,194,921	C→T	5.9%	L352L (CTG→TTG)	uxpA →	lipoprotein UxpA
RA	1,194,928	A→T	5.5%	Q354L (CAG→CTG)	uxpA →	lipoprotein UxpA
RA	1,219,155	A→G	5.0%	D229G (GAC→GGC)	PP_1064 →	alpha/beta family hydrolase
RA	1,224,636	C→T	6.3%	W16* (TGG→TGA) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,224,637	C→G	6.3%	W16S (TGG→TCG) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,224,638	A→G	6.4%	W16R (TGG→CGG) ‡	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,225,479	G→T	6.4%	intergenic (‑49/+97)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,486	A→C	6.9%	intergenic (‑56/+90)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,487	A→T	5.8%	intergenic (‑57/+89)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,488	G→T	5.9%	intergenic (‑58/+88)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,241,968:1	+T	6.6%	intergenic (+27/+31)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,241,973	Δ1 bp	6.6%	intergenic (+32/+26)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,245,344	G→C	5.1%	R64G (CGC→GGC)	pyrC ←	dihydroorotase
RA	1,245,703	A→G	5.1%	S18G (AGC→GGC)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,707	T→G	5.1%	L19R (CTG→CGG)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,710	C→A	5.1%	P20Q (CCG→CAG)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,714	C→T	5.2%	A21A (GCC→GCT)	PP_1087 →	OmpA family outer membrane protein
RA	1,256,887	A→T	7.7%	noncoding (434/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,888	G→T	7.7%	noncoding (433/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,889	A→C	8.1%	noncoding (432/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,890	A→T	8.5%	noncoding (431/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,264,633	G→C	5.5%	R265G (CGC→GGC)	PP_1106 ←	hypothetical protein
RA	1,264,638	C→G	5.6%	G263A (GGC→GCC)	PP_1106 ←	hypothetical protein
RA	1,275,093	G→C	5.5%	intergenic (‑284/+28)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,285,033	T→C	5.0%	G86G (GGT→GGC)	PP_1122 →	OmpA family protein
RA	1,285,034	G→A	5.0%	G87S (GGT→AGT) ‡	PP_1122 →	OmpA family protein
RA	1,285,035	G→A	5.0%	G87D (GGT→GAT) ‡	PP_1122 →	OmpA family protein
RA	1,285,043	T→C	6.0%	L90L (TTG→CTG) ‡	PP_1122 →	OmpA family protein
RA	1,285,044	T→A	5.9%	L90* (TTG→TAG) ‡	PP_1122 →	OmpA family protein
RA	1,285,045	G→A	5.9%	L90L (TTG→TTA) ‡	PP_1122 →	OmpA family protein
JC	1,311,725	Δ84 bp	11.4%	intergenic (‑187/+8)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,327,127	C→T	55.6%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,344,106	G→T	5.2%	P13T (CCT→ACT)	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,344,113	G→C	6.3%	A10A (GCC→GCG) ‡	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,344,114	G→C	6.3%	A10G (GCC→GGC) ‡	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,344,121	A→C	5.5%	C8G (TGC→GGC)	PP_1168 ←	TRAP dicarboxylate transporter subunit DctQ
RA	1,348,787	C→A	9.1%	intergenic (‑247/+507)	galP‑I ← / ← PP_1174	porin‑like protein/hypothetical protein
RA	1,356,411	G→C	5.5%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,376,327	A→T	6.1%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,328	G→C	7.4%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,329	A→T	6.1%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,382,332	A→T	5.1%	intergenic (+12/+15)	dinB → / ← PP_1204	DNA polymerase IV/lipoprotein
RA	1,383,260	A→T	10.5%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein
RA	1,392,921	T→C	15.9%	intergenic (+85/‑101)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,923	A→G	15.9%	intergenic (+87/‑99)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,925	G→A	16.1%	intergenic (+89/‑97)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,927:1	+A	15.4%	intergenic (+91/‑95)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,933	C→G	16.9%	intergenic (+97/‑89)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,939	Δ1 bp	17.1%	intergenic (+103/‑83)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,942	T→C	17.2%	intergenic (+106/‑80)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,944	C→T	18.8%	intergenic (+108/‑78)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,392,946	G→A	16.8%	intergenic (+110/‑76)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,403,596	G→A	21.2%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,597	T→C	21.7%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,413,439	T→A	5.0%	N155I (AAC→ATC) ‡	PP_1235 ←	AhpC/TSA family protein
RA	1,413,440	T→A	5.5%	N155Y (AAC→TAC) ‡	PP_1235 ←	AhpC/TSA family protein
RA	1,414,217	G→A	5.3%	S86S (AGC→AGT) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,414,218	C→G	5.3%	S86T (AGC→ACC) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,414,219	T→C	5.2%	S86G (AGC→GGC) ‡	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,416,868	G→A	5.6%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,874	T→A	5.4%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,880	T→C	5.4%	L41P (CTG→CCG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,458,124	T→G	5.5%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,126	A→T	5.6%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,128	C→A	5.7%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,464,198	T→G	9.9%	Q476P (CAG→CCG)	algX ←	alginate biosynthesis protein AlgX
RA	1,464,203	G→A	7.9%	T474T (ACC→ACT) ‡	algX ←	alginate biosynthesis protein AlgX
RA	1,464,205	T→A	10.4%	T474S (ACC→TCC) ‡	algX ←	alginate biosynthesis protein AlgX
RA	1,464,207	T→G	11.9%	Q473P (CAG→CCG)	algX ←	alginate biosynthesis protein AlgX
RA	1,475,002	T→G	11.2%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,475,003	C→A	11.1%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,497,841	T→G	6.2%	M141R (ATG→AGG)	PP_1310 →	hypothetical protein
RA	1,499,479	T→G	10.6%	intergenic (+49/‑117)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,504,076	T→A	5.1%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,506,932	A→G	9.1%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,936	G→A	9.6%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,939	T→C	9.9%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,943	C→T	8.9%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,528,838	C→A	5.0%	G379G (GGC→GGA)	ftsA →	cell division protein FtsA
RA	1,528,844	G→T	5.3%	L381L (CTG→CTT)	ftsA →	cell division protein FtsA
RA	1,528,845	A→C	5.7%	K382Q (AAG→CAG)	ftsA →	cell division protein FtsA
RA	1,528,851	T→G	5.4%	S384A (TCC→GCC)	ftsA →	cell division protein FtsA
JC	1,531,774	Δ107 bp	8.9%	coding (38‑144/630 nt)	PP_1344 ←	hypothetical protein
RA	1,534,923	T→G	6.8%	intergenic (+72/‑111)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,931	T→C	13.1%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,935	C→T	12.5%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,940	A→G	12.8%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,944	G→A	12.7%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,950	A→G	9.5%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,544,531	C→A	34.1%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,534	G→C	33.3%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,536	C→G	33.3%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,541	C→G	33.4%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,543	G→C	34.8%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,546	T→G	34.5%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,551,324	G→T	5.0%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,555,430	A→C	6.4%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,568,919	G→A	5.0%	intergenic (+14/‑313)	pcaK → / → pcaF‑I	4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase
RA	1,592,024	C→A	11.3%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,592,029	T→G	11.4%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,593,647	C→G	10.5%	Q66H (CAG→CAC)	PP_1399 ←	hypothetical protein
RA	1,598,855	C→A	5.0%	intergenic (‑52/+79)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,870	A→G	10.5%	intergenic (‑67/+64)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,873	C→G	9.6%	intergenic (‑70/+61)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,874	T→C	9.6%	intergenic (‑71/+60)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,875	G→A	9.3%	intergenic (‑72/+59)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,876	C→G	9.4%	intergenic (‑73/+58)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,879	C→T	9.3%	intergenic (‑76/+55)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,625,249	G→T	7.8%	intergenic (+30/+27)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,250	A→C	16.6%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,633,966	C→T	5.1%	intergenic (+18/‑146)	lepB → / → rnc	signal peptidase I/ribonuclease 3
RA	1,633,967	A→G	5.1%	intergenic (+19/‑145)	lepB → / → rnc	signal peptidase I/ribonuclease 3
RA	1,633,968	G→C	5.1%	intergenic (+20/‑144)	lepB → / → rnc	signal peptidase I/ribonuclease 3
RA	1,633,969	C→T	5.1%	intergenic (+21/‑143)	lepB → / → rnc	signal peptidase I/ribonuclease 3
RA	1,633,970	A→G	5.1%	intergenic (+22/‑142)	lepB → / → rnc	signal peptidase I/ribonuclease 3
RA	1,637,357	T→C	11.1%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,367	A→T	15.9%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,368	A→T	15.8%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,378	G→A	11.1%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,384	A→G	5.8%	intergenic (+51/+15)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,639,607	A→G	7.6%	intergenic (‑155/‑156)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,617	C→T	11.8%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,618	G→T	12.3%	intergenic (‑166/‑145)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,622	G→A	11.7%	intergenic (‑170/‑141)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,623	T→C	11.5%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,627	A→C	12.3%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,628	A→G	11.9%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,642,306	G→A	8.7%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,313	G→C	10.4%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,319	G→C	9.5%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,320	C→G	9.6%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,321	G→C	9.4%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,327	G→C	10.0%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,334	T→C	7.7%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,343	G→A	6.2%	intergenic (‑129/+23)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,345	C→T	6.1%	intergenic (‑131/+21)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,644,878	G→T	9.8%	intergenic (‑95/+109)	lon‑I ← / ← gcd	DNA‑binding ATP‑dependent protease/quinoprotein glucose dehydrogenase
RA	1,644,879	C→G	9.7%	intergenic (‑96/+108)	lon‑I ← / ← gcd	DNA‑binding ATP‑dependent protease/quinoprotein glucose dehydrogenase
RA	1,644,880	A→C	9.5%	intergenic (‑97/+107)	lon‑I ← / ← gcd	DNA‑binding ATP‑dependent protease/quinoprotein glucose dehydrogenase
RA	1,681,709	A→T	6.8%	E62D (GAA→GAT)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,681,711	C→G	6.9%	A63G (GCC→GGC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,681,713	A→T	6.7%	I64F (ATC→TTC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,683,290	C→G	7.5%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,683,293	C→G	7.5%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,691,814	T→C	7.1%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,815	C→G	7.2%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,825	C→A	12.0%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,828	T→G	12.7%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,838	C→G	5.8%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,839	G→A	5.7%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,832	C→A	5.3%	R87S (CGC→AGC) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,693,834	C→G	5.7%	R87R (CGC→CGG) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,703,290	A→G	29.3%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,292	G→C	27.6%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,294	C→T	30.0%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,704,678	T→A	6.5%	M1M (TTG→ATG) †‡	PP_1499 →	hypothetical protein
RA	1,704,679	T→A	6.1%	M1* (TTG→TAG) †‡	PP_1499 →	hypothetical protein
RA	1,707,269	G→C	6.8%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,272	G→C	8.0%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,330:1	+A	7.6%	intergenic (+106/+36)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,335	Δ1 bp	7.5%	intergenic (+111/+31)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,122	A→T	12.5%	intergenic (+71/‑187)	ppc → / → adk	phosphoenolpyruvate carboxylase/adenylate kinase
RA	1,712,140	G→C	5.6%	intergenic (+89/‑169)	ppc → / → adk	phosphoenolpyruvate carboxylase/adenylate kinase
RA	1,712,993	T→A	8.8%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,994	T→A	8.7%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,726,527	A→T	6.1%	L560Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,726,530	A→T	5.7%	L559Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,750,775	C→G	7.4%	A31G (GCC→GGC)	PP_1551 →	replication protein O
RA	1,765,285	T→G	5.7%	S136S (TCT→TCG)	PP_1574 →	hypothetical protein
RA	1,765,286	G→T	5.4%	G137C (GGC→TGC)	PP_1574 →	hypothetical protein
RA	1,765,289	A→C	5.5%	T138P (ACG→CCG) ‡	PP_1574 →	hypothetical protein
RA	1,765,290	C→A	5.5%	T138K (ACG→AAG) ‡	PP_1574 →	hypothetical protein
JC	1,780,109	Δ62 bp	16.6%	intergenic (+26/+19)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,171	T→C	5.3%	intergenic (+88/+18)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,786,064	T→A	6.7%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,065	T→A	6.9%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,066	T→A	7.1%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,804,690	T→G	6.1%	intergenic (+53/‑119)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,804,691	T→A	6.1%	intergenic (+54/‑118)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,804,692	C→A	6.2%	intergenic (+55/‑117)	accA → / → tilS	acetyl‑CoA carboxylase carboxyltransferase subunit alpha/tRNA lysidine(34) synthetase TilS
RA	1,808,130	A→C	5.9%	K47Q (AAG→CAG) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,131	A→T	5.5%	K47M (AAG→ATG) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,808,132	G→T	5.5%	K47N (AAG→AAT) ‡	kdsA‑I →	2‑dehydro‑3‑deoxyphosphooctonate aldolase
RA	1,810,377	T→G	8.5%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,811,482	T→A	6.7%	intergenic (+47/+81)	ispD → / ← PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
RA	1,831,819	G→A	6.2%	R219Q (CGG→CAG)	yfiP →	hypothetical protein
RA	1,831,822	T→C	6.0%	L220P (CTG→CCG)	yfiP →	hypothetical protein
RA	1,860,748	C→T	6.6%	M77I (ATG→ATA) ‡	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,860,750	T→A	6.6%	M77L (ATG→TTG) ‡	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,860,752	A→G	6.6%	L76P (CTA→CCA)	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,860,757	Δ1 bp	6.1%	coding (222/654 nt)	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,860,765	A→C	5.0%	F72V (TTC→GTC)	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,863,282	T→A	5.2%	L309Q (CTG→CAG)	PP_1666 →	hypothetical protein
RA	1,870,187	G→T	5.3%	G112V (GGC→GTC)	cobD →	Subunit of adenosylcobinamide‑phosphate synthase beta component
RA	1,870,190	A→C	5.7%	D113A (GAC→GCC)	cobD →	Subunit of adenosylcobinamide‑phosphate synthase beta component
RA	1,892,568	C→G	6.5%	intergenic (+36/‑59)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,569	T→C	6.5%	intergenic (+37/‑58)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,570	G→A	6.5%	intergenic (+38/‑57)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,892,571	C→G	6.5%	intergenic (+39/‑56)	PP_1697 → / → PP_1698	transcriptional regulator, GntR family/MFS transporter
RA	1,897,245	G→T	5.8%	intergenic (‑56/+88)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,897,249	T→A	6.3%	intergenic (‑60/+84)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,897,253	A→C	7.4%	intergenic (‑64/+80)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,906,794	A→C	12.3%	intergenic (+92/+36)	nirD → / ← PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,921,591	T→A	12.4%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,592	T→A	13.7%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,925,754	A→T	12.3%	intergenic (‑11/+89)	PP_1725 ← / ← PP_1726	hypothetical protein/ABC transporter substrate‑binding protein
RA	1,930,441	A→C	9.1%	intergenic (‑66/+39)	PP_1729 ← / ← apeB	hypothetical protein/M18 family aminopeptidase
RA	1,955,234	T→G	5.9%	intergenic (+21/‑172)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,238	G→A	6.1%	intergenic (+25/‑168)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,241	G→C	5.9%	intergenic (+28/‑165)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,242	C→T	6.1%	intergenic (+29/‑164)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,252	T→A	9.1%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,253	T→A	9.0%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,263	A→G	5.3%	intergenic (+50/‑143)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,264	G→C	5.7%	intergenic (+51/‑142)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,993,645	G→T	12.3%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,646	C→G	12.2%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,647	A→C	12.2%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,051,268	G→T	5.7%	intergenic (‑32/+28)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,051,269	A→C	6.2%	intergenic (‑33/+27)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,065,150	C→G	11.1%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,157	C→A	11.5%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,158	A→C	22.1%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,159	T→C	12.4%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,166	G→A	12.4%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,170	T→C	12.9%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,173	G→A	13.7%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,177	T→C	13.5%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,184	G→A	12.0%	intergenic (+76/‑131)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,185	G→T	13.5%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,186	T→G	16.1%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,065,193	C→G	13.2%	intergenic (+85/‑122)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,070,116	A→T	8.1%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,070,117	A→T	8.1%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,080,228	A→C	14.8%	intergenic (+48/+67)	PP_1853 → / ← PP_1854	LysR family transcriptional regulator/hypothetical protein
RA	2,080,251	A→C	12.8%	intergenic (+71/+44)	PP_1853 → / ← PP_1854	LysR family transcriptional regulator/hypothetical protein
RA	2,080,262	T→G	9.1%	intergenic (+82/+33)	PP_1853 → / ← PP_1854	LysR family transcriptional regulator/hypothetical protein
RA	2,087,554	C→T	6.7%	intergenic (+298/‑297)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,087,556	A→G	6.5%	intergenic (+300/‑295)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,087,557	C→T	6.4%	intergenic (+301/‑294)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,087,559	A→G	6.3%	intergenic (+303/‑292)	PP_1864 → / → PP_1865	hypothetical protein/transposase
RA	2,089,298	C→G	7.6%	intergenic (+146/+772)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,089,299	C→G	7.5%	intergenic (+147/+771)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,094,391	T→A	5.4%	intergenic (+72/+19)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,094,392	T→A	5.4%	intergenic (+73/+18)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,095,997	C→T	5.5%	intergenic (+68/+30)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,095,998	G→T	5.3%	intergenic (+69/+29)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,095,999	A→C	5.6%	intergenic (+70/+28)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,096,000	A→G	5.5%	intergenic (+71/+27)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,097,154	G→C	9.0%	intergenic (‑240/+77)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,097,157	G→C	8.9%	intergenic (‑243/+74)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,110,984	A→T	6.6%	I104N (ATT→AAT)	PP_1881 ←	hypothetical protein
RA	2,149,173	T→G	7.2%	intergenic (+81/+36)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,149,174	T→C	7.2%	intergenic (+82/+35)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,149,175	G→A	7.2%	intergenic (+83/+34)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,149,176	C→A	7.2%	intergenic (+84/+33)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,170,155	A→T	5.1%	intergenic (+90/+598)	PP_1921 → / ← PP_1922	hypothetical protein/hypothetical protein
RA	2,170,156	G→C	5.0%	intergenic (+91/+597)	PP_1921 → / ← PP_1922	hypothetical protein/hypothetical protein
RA	2,170,157	A→T	6.3%	intergenic (+92/+596)	PP_1921 → / ← PP_1922	hypothetical protein/hypothetical protein
RA	2,198,294	G→A	5.0%	intergenic (‑665/+58)	PP_1940 ← / ← PP_1941	methyl‑accepting chemotaxis transducer/hypothetical protein
RA	2,198,295	C→G	5.0%	intergenic (‑666/+57)	PP_1940 ← / ← PP_1941	methyl‑accepting chemotaxis transducer/hypothetical protein
RA	2,198,296	T→C	5.1%	intergenic (‑667/+56)	PP_1940 ← / ← PP_1941	methyl‑accepting chemotaxis transducer/hypothetical protein
RA	2,243,256	C→G	15.5%	intergenic (+38/‑243)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,265	A→G	14.0%	intergenic (+47/‑234)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,268	G→A	14.7%	intergenic (+50/‑231)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,269	G→T	20.9%	intergenic (+51/‑230)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,271	A→G	15.9%	intergenic (+53/‑228)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,276	C→T	14.4%	intergenic (+58/‑223)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,278	A→C	17.7%	intergenic (+60/‑221)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,279	T→C	16.1%	intergenic (+61/‑220)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,282	C→T	15.5%	intergenic (+64/‑217)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,243,291	C→G	14.6%	intergenic (+73/‑208)	gltX → / → PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
RA	2,248,206	C→T	8.0%	intergenic (+30/+61)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,248,207	A→G	8.4%	intergenic (+31/+60)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,275,017	A→G	5.2%	intergenic (+17/+274)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,275,027	C→G	9.1%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,275,031	A→T	9.7%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,275,035	C→G	9.0%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,275,045	C→T	7.0%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,284,702	T→G	10.2%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,284,735	T→G	41.6%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,284,739	G→C	38.5%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,284,740	G→C	38.5%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,284,744	C→A	40.2%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,284,777	C→A	9.1%	intergenic (‑204/+25)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,284,784	G→A	5.3%	intergenic (‑211/+18)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,297,794	T→G	6.4%	intergenic (+75/+58)	PP_5496 → / ← PP_2023	hypothetical protein/glutathione S‑transferase family protein
RA	2,344,067	C→A	5.9%	intergenic (+17/‑47)	yraO → / → PP_2058	transporter YraO/porin
RA	2,344,068	T→G	5.8%	intergenic (+18/‑46)	yraO → / → PP_2058	transporter YraO/porin
RA	2,353,554	A→C	5.0%	L36R (CTG→CGG) ‡	PP_2066 ←	GntR family transcriptional regulator
RA	2,353,555	G→T	5.4%	L36M (CTG→ATG) ‡	PP_2066 ←	GntR family transcriptional regulator
RA	2,370,254	A→C	5.1%	E369D (GAA→GAC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,374,046	G→T	6.1%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,374,047	T→C	6.2%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,374,048	G→A	6.2%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,374,049	A→C	6.2%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,383,367	T→G	7.5%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,383,368	C→A	7.3%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,397,548	G→C	9.5%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,397,550	A→T	9.5%	intergenic (‑193/+50)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,397,552	G→C	9.8%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,402,493	T→G	9.3%	intergenic (‑246/+29)	evgA ← / ← dgt	two‑component system response regulator/deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,410,625	C→G	7.6%	intergenic (‑96/+46)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,410,626	C→G	7.4%	intergenic (‑97/+45)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,410,627	C→G	7.4%	intergenic (‑98/+44)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,410,628	C→G	8.0%	intergenic (‑99/+43)	PP_2111 ← / ← acnA‑I	aerotaxis receptor/aconitate hydratase
RA	2,414,869	G→C	7.7%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,414,870	G→C	7.8%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,422,563	Δ1 bp	11.2%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,422,567:1	+T	11.4%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,427,829	T→G	13.0%	E33D (GAA→GAC) ‡	PP_2126 ←	LuxR family transcriptional regulator
RA	2,427,831	C→A	9.1%	E33* (GAA→TAA) ‡	PP_2126 ←	LuxR family transcriptional regulator
RA	2,445,465	T→A	6.3%	F6I (TTT→ATT) ‡	PP_2140 →	hypothetical protein
RA	2,445,466	T→A	6.1%	F6Y (TTT→TAT) ‡	PP_2140 →	hypothetical protein
RA	2,445,467	T→A	6.2%	F6L (TTT→TTA) ‡	PP_2140 →	hypothetical protein
RA	2,446,380	A→C	11.2%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,446,384	G→T	10.6%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,446,385	A→C	11.1%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,446,389	G→T	11.2%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,458,020	C→G	5.0%	A257G (GCC→GGC)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,458,022	T→A	5.1%	C258S (TGC→AGC) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,458,024	C→G	5.1%	C258W (TGC→TGG) ‡	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,458,027	G→A	5.1%	P259P (CCG→CCA)	gapB →	glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,463,671	G→T	5.6%	A235A (GCG→GCT)	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,463,672	C→A	5.6%	P236T (CCG→ACG)	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,463,679	T→G	6.6%	V238G (GTA→GGA) ‡	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,463,680	A→C	5.4%	V238V (GTA→GTC) ‡	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,470,226	G→C	6.1%	intergenic (‑25/+98)	PP_2161 ← / ← PP_2162	hypothetical protein/phosphonoacetaldehyde phosphonohydrolase‑like protein
RA	2,476,108	T→C	11.1%	intergenic (‑48/+132)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,476,113	T→C	11.3%	intergenic (‑53/+127)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,476,114	C→T	9.1%	intergenic (‑54/+126)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,476,119	A→G	8.7%	intergenic (‑59/+121)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,476,120	G→A	8.7%	intergenic (‑60/+120)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,476,125	G→A	9.0%	intergenic (‑65/+115)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,476,127	A→G	10.5%	intergenic (‑67/+113)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,480,369	A→T	12.5%	K34M (AAG→ATG)	PP_2172 →	hypothetical protein
JC	2,480,371	Δ3 bp	9.0%	coding (103‑105/444 nt)	PP_2172 →	hypothetical protein
RA	2,485,362	G→A	6.0%	R88H (CGC→CAC)	puuA‑I →	glutamate‑putrescine ligase
RA	2,485,365	T→A	6.0%	L89Q (CTG→CAG)	puuA‑I →	glutamate‑putrescine ligase
RA	2,485,368	T→C	6.2%	V90A (GTG→GCG)	puuA‑I →	glutamate‑putrescine ligase
RA	2,530,965	G→C	8.1%	intergenic (+127/‑280)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,530,966	G→C	8.1%	intergenic (+128/‑279)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,530,993	G→C	8.1%	intergenic (+155/‑252)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,530,994	G→C	8.1%	intergenic (+156/‑251)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,542,774	T→A	9.4%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,542,775	G→C	9.2%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,542,776	T→A	8.9%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,548,788	T→C	5.1%	intergenic (+22/+18)	PP_2238 → / ← PP_5504	metallopeptidase/hypothetical protein
RA	2,586,575	G→T	5.5%	intergenic (+97/+30)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,586,576	C→T	5.4%	intergenic (+98/+29)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,586,577	A→G	5.4%	intergenic (+99/+28)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,586,578	A→C	5.7%	intergenic (+100/+27)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,592,042	G→C	6.0%	A42P (GCG→CCG)	PP_2267 →	single‑stranded DNA‑binding protein
RA	2,635,422	T→G	6.1%	intergenic (+100/‑82)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,635,423	C→A	5.9%	intergenic (+101/‑81)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,653,241	G→C	5.1%	intergenic (+41/+29)	PP_2323 → / ← aroF‑I	hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA	2,665,984	T→G	8.3%	intergenic (+44/‑119)	prpC → / → acnA‑II	methylcitrate synthase/aconitate hydratase
RA	2,671,636	T→G	10.1%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,671,639	C→A	9.9%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,679,155	T→C	6.4%	W66R (TGG→CGG)	PP_2347 →	two‑component system response regulator
RA	2,679,159	G→A	6.6%	R67H (CGT→CAT) ‡	PP_2347 →	two‑component system response regulator
RA	2,679,160	T→C	6.5%	R67R (CGT→CGC) ‡	PP_2347 →	two‑component system response regulator
RA	2,679,164	G→A	6.5%	A69T (GCT→ACT)	PP_2347 →	two‑component system response regulator
RA	2,685,460	A→C	5.5%	L357R (CTG→CGG)	PP_2352 ←	hypothetical protein
RA	2,709,012	G→T	5.9%	intergenic (+16/+31)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,709,015	A→C	5.3%	intergenic (+19/+28)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,726,680	A→C	5.3%	intergenic (‑124/+24)	azlC ← / ← PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
RA	2,726,681	A→T	5.2%	intergenic (‑125/+23)	azlC ← / ← PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
RA	2,726,682	G→T	5.2%	intergenic (‑126/+22)	azlC ← / ← PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
RA	2,744,882	C→T	5.4%	H5Y (CAC→TAC) ‡	PP_2397 →	EF hand domain‑containing protein
RA	2,744,883	A→G	5.5%	H5R (CAC→CGC) ‡	PP_2397 →	EF hand domain‑containing protein
RA	2,778,072	A→C	5.4%	K152Q (AAG→CAG)	sotB →	sugar efflux transporter
RA	2,795,717	G→T	12.2%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,795,720	A→C	11.5%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,795,721	C→A	10.4%	intergenic (+65/+62)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,795,722	T→G	12.4%	intergenic (+66/+61)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,795,723	G→T	11.8%	intergenic (+67/+60)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,795,726	A→C	11.9%	intergenic (+70/+57)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,796,938	T→C	5.0%	intergenic (+81/+31)	PP_2447 → / ← puuB	hypothetical protein/gamma‑glutamylputrescine oxidase
RA	2,804,956	A→C	5.4%	K459Q (AAG→CAG)	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,819,167	C→G	5.3%	intergenic (+122/+1)	PP_t44 → / ← PP_5526	tRNA‑Pro/hypothetical protein
RA	2,865,794	T→G	10.2%	S297A (TCG→GCG)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,875,612	G→A	6.8%	V143M (GTG→ATG) ‡	cigR →	membrane protein
RA	2,875,613	T→C	6.8%	V143A (GTG→GCG) ‡	cigR →	membrane protein
RA	2,875,621	G→A	5.6%	G146R (GGG→AGG)	cigR →	membrane protein
RA	2,875,724	A→C	6.6%	intergenic (+65/+17)	cigR → / ← PP_2527	membrane protein/membrane protein
RA	2,889,528	T→C	5.1%	H369R (CAC→CGC)	PP_2542 ←	GntR family transcriptional regulator
RA	2,948,552	G→C	5.9%	P312R (CCG→CGG) ‡	yijP ←	phosphoethanolamine transferase CptA
RA	2,948,553	G→C	5.9%	P312A (CCG→GCG) ‡	yijP ←	phosphoethanolamine transferase CptA
RA	2,953,299	G→C	17.4%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,953,306	A→C	18.2%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,953,307	G→T	18.1%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,953,314	G→C	15.7%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
JC	2,959,046	Δ84 bp	15.7%	intergenic (+36/‑77)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,960,755	T→C	15.9%	intergenic (+56/+86)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,960,764	G→C	17.2%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,960,765	T→C	17.5%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,960,768	G→C	16.9%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,960,771	G→A	17.3%	intergenic (+72/+70)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,960,772	G→C	17.2%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,960,781	G→A	11.7%	intergenic (+82/+60)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	3,003,780	C→G	7.1%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,003,786	G→A	8.0%	R182Q (CGG→CAG)	PP_2625 →	hypothetical protein
RA	3,003,789	G→C	9.7%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,003,792	T→C	8.7%	L184P (CTG→CCG)	PP_2625 →	hypothetical protein
RA	3,003,798	C→G	8.5%	A186G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,012,941	C→A	7.0%	R13S (CGC→AGC)	bcsG →	endoglucanase
RA	3,032,378	C→G	5.1%	intergenic (+413/‑281)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,032,382	G→C	6.1%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,050,569	G→T	8.5%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,050,570	A→C	9.2%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,052,009	A→T	5.8%	intergenic (+16/‑125)	PP_2662 → / → PP_2663	hypothetical protein/hypothetical protein
RA	3,052,010	G→A	5.8%	intergenic (+17/‑124)	PP_2662 → / → PP_2663	hypothetical protein/hypothetical protein
RA	3,053,803	T→A	5.4%	Y180N (TAC→AAC) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,053,804	A→G	5.1%	Y180C (TAC→TGC) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,053,809	C→T	5.3%	L182L (CTG→TTG) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,053,810	T→A	5.4%	L182Q (CTG→CAG) ‡	PP_2664 →	two‑component system sensor histidine kinase/response regulator
RA	3,059,763	A→T	5.1%	Y258* (TAT→TAA) ‡	PP_5538 ←	ABC transporter substrate‑binding protein
RA	3,059,764	T→A	5.5%	Y258F (TAT→TTT) ‡	PP_5538 ←	ABC transporter substrate‑binding protein
RA	3,059,765	A→T	5.0%	Y258N (TAT→AAT) ‡	PP_5538 ←	ABC transporter substrate‑binding protein
RA	3,072,452	C→T	5.1%	intergenic (+55/‑299)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,072,453	A→G	5.1%	intergenic (+56/‑298)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,072,463	A→G	5.2%	intergenic (+66/‑288)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,072,464	A→T	5.3%	intergenic (+67/‑287)	aldB‑II → / → pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
RA	3,185,847	G→A	5.2%	V124M (GTG→ATG) ‡	PP_2794 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	3,185,848	T→C	5.2%	V124A (GTG→GCG) ‡	PP_2794 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	3,191,243	G→C	7.5%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,191,244	G→C	7.2%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,254,457	G→A	5.1%	intergenic (+22/+221)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,254,462	T→C	7.9%	intergenic (+27/+216)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,255,352	C→T	5.5%	A19T (GCT→ACT)	PP_2851 ←	hypothetical protein
RA	3,278,277	A→G	5.2%	intergenic (+14/+33)	PP_2874 → / ← PP_2875	hypothetical protein/hypothetical protein
RA	3,278,278	T→C	5.2%	intergenic (+15/+32)	PP_2874 → / ← PP_2875	hypothetical protein/hypothetical protein
RA	3,278,279	G→A	5.2%	intergenic (+16/+31)	PP_2874 → / ← PP_2875	hypothetical protein/hypothetical protein
RA	3,278,280	C→T	5.3%	intergenic (+17/+30)	PP_2874 → / ← PP_2875	hypothetical protein/hypothetical protein
RA	3,306,728	A→G	5.6%	intergenic (+16/+16)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,306,729	C→G	5.5%	intergenic (+17/+15)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,306,730	C→T	5.5%	intergenic (+18/+14)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,314,652	G→T	12.1%	intergenic (+28/‑134)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,314,653	T→A	11.5%	intergenic (+29/‑133)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,314,654	T→A	11.7%	intergenic (+30/‑132)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,314,655	A→C	11.6%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,319,178	C→G	5.5%	P608P (CCG→CCC)	treSA ←	trehalose synthase A
RA	3,321,097	T→G	5.3%	intergenic (‑96/+96)	treSA ← / ← PP_2919	trehalose synthase A/LysR family transcriptional regulator
RA	3,341,128	T→A	6.5%	intergenic (‑165/+78)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,341,132	T→A	11.5%	intergenic (‑169/+74)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,341,181	C→T	6.9%	intergenic (‑218/+25)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,341,182	G→C	8.1%	intergenic (‑219/+24)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,341,183	A→G	7.1%	intergenic (‑220/+23)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,341,191	A→G	6.5%	intergenic (‑228/+15)	PP_2935 ← / ← ybiT	membrane protein/ABC‑F family ATPase
RA	3,395,612	C→G	5.0%	A254P (GCC→CCC)	PP_2997 ←	protein CnmA
RA	3,395,616	T→A	5.1%	T252T (ACA→ACT) ‡	PP_2997 ←	protein CnmA
RA	3,395,617	G→C	5.1%	T252R (ACA→AGA) ‡	PP_2997 ←	protein CnmA
RA	3,395,618	T→A	5.1%	T252S (ACA→TCA) ‡	PP_2997 ←	protein CnmA
RA	3,395,622	C→G	5.7%	G250G (GGG→GGC)	PP_2997 ←	protein CnmA
RA	3,399,559	C→A	5.1%	A25A (GCC→GCA)	PP_3002 →	shikimate dehydrogenase‑like protein
RA	3,405,777	C→T	5.2%	P77L (CCA→CTA)	PP_3014 →	hypothetical protein
RA	3,405,779	A→G	5.1%	S78G (AGC→GGC)	PP_3014 →	hypothetical protein
RA	3,438,160	T→A	7.2%	W44R (TGG→AGG)	gpI →	tail formation protein
RA	3,438,164	T→C	7.2%	L45P (CTG→CCG) ‡	gpI →	tail formation protein
RA	3,438,165	G→A	7.2%	L45L (CTG→CTA) ‡	gpI →	tail formation protein
RA	3,438,169	T→A	7.2%	W47R (TGG→AGG)	gpI →	tail formation protein
RA	3,442,590	A→T	5.6%	E123V (GAG→GTG)	PP_3060 →	tail sheath protein
RA	3,442,594	G→T	6.1%	L124L (CTG→CTT)	PP_3060 →	tail sheath protein
RA	3,442,595	A→C	6.0%	K125Q (AAG→CAG)	PP_3060 →	tail sheath protein
RA	3,442,599	A→T	5.9%	H126L (CAC→CTC)	PP_3060 →	tail sheath protein
RA	3,449,251	A→C	14.6%	S18R (AGC→CGC)	PP_5556 →	bacteriophage lysis protein
RA	3,449,256	T→G	18.0%	A19A (GCT→GCG)	PP_5556 →	bacteriophage lysis protein
RA	3,455,445	A→G	5.1%	intergenic (‑34/+79)	PP_3069 ← / ← ppiC‑I	outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C
RA	3,468,020	G→C	7.7%	noncoding (105/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,468,021	A→T	8.0%	noncoding (104/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,468,022	A→T	7.6%	noncoding (103/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,468,023	G→C	8.5%	noncoding (102/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,468,806	T→G	14.6%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,536,727	T→G	5.0%	intergenic (+49/‑106)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,580,393	T→A	11.7%	intergenic (+105/‑219)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,599,045	G→T	6.6%	intergenic (‑75/+21)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,599,047	C→A	6.6%	intergenic (‑77/+19)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,599,048	T→G	6.6%	intergenic (‑78/+18)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,599,050	A→C	6.5%	intergenic (‑80/+16)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,616,687	A→C	5.8%	T199P (ACC→CCC) ‡	pet →	protein Pet18
RA	3,616,688	C→A	5.9%	T199N (ACC→AAC) ‡	pet →	protein Pet18
RA	3,616,691	T→G	6.1%	V200G (GTG→GGG) ‡	pet →	protein Pet18
RA	3,616,692	G→T	5.9%	V200V (GTG→GTT) ‡	pet →	protein Pet18
RA	3,626,109	G→C	6.0%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,630,047	C→G	8.3%	intergenic (+11/‑129)	PP_3198 → / → PP_3199	2Fe‑2S ferredoxin/monooxygenase
RA	3,635,100	C→T	5.8%	L203L (CTG→TTG)	PP_3201 →	BNR domain‑containing protein
RA	3,635,111	A→G	5.3%	Q206Q (CAA→CAG)	PP_3201 →	BNR domain‑containing protein
RA	3,635,116	A→T	5.1%	N208I (AAC→ATC)	PP_3201 →	BNR domain‑containing protein
RA	3,646,913	C→T	7.1%	intergenic (‑43/+23)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,646,916	A→G	6.4%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,661,874	T→C	5.1%	intergenic (‑44/+31)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,661,876	C→G	5.0%	intergenic (‑46/+29)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,699,409	G→A	6.2%	S15S (AGC→AGT) ‡	PP_5595 ←	hypothetical protein
RA	3,699,410	C→G	6.2%	S15T (AGC→ACC) ‡	PP_5595 ←	hypothetical protein
RA	3,699,411	T→C	6.1%	S15G (AGC→GGC) ‡	PP_5595 ←	hypothetical protein
RA	3,720,069	C→G	5.2%	A163A (GCG→GCC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,720,074	T→A	5.1%	K162* (AAG→TAG)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,720,078	C→G	6.7%	R160R (CGG→CGC) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,720,080	G→T	5.2%	R160R (CGG→AGG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,725,648	G→T	10.2%	intergenic (+13/+17)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,725,649	C→T	10.2%	intergenic (+14/+16)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,725,650	A→G	10.3%	intergenic (+15/+15)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,725,651	A→C	10.3%	intergenic (+16/+14)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,755,560	G→T	5.0%	A96A (GCC→GCA)	PP_3316 ←	chaperone‑associated ATPase
RA	3,755,563	A→C	5.3%	V95V (GTT→GTG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,764,907	A→T	5.5%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,764,912	A→T	5.3%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,765,467	A→G	7.3%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,765,469	G→C	7.3%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,765,471	C→T	7.4%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,770,240	C→A	5.2%	P97Q (CCG→CAG)	PP_5600 →	hypothetical protein
RA	3,778,338	T→G	16.9%	intergenic (+55/‑88)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,778,360	A→C	15.9%	intergenic (+77/‑66)	PP_3338 → / → PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein
RA	3,793,069	G→T	5.3%	G183V (GGC→GTC) ‡	PP_3353 →	sulfatase‑modifying protein
RA	3,793,070	C→T	5.3%	G183G (GGC→GGT) ‡	PP_3353 →	sulfatase‑modifying protein
RA	3,793,075	A→G	5.2%	E185G (GAA→GGA) ‡	PP_3353 →	sulfatase‑modifying protein
RA	3,793,076	A→C	5.5%	E185D (GAA→GAC) ‡	PP_3353 →	sulfatase‑modifying protein
RA	3,795,857	A→T	5.9%	L211M (TTG→ATG)	PP_3355 ←	beta‑ketothiolase
RA	3,795,862	A→T	6.0%	I209N (ATT→AAT)	PP_3355 ←	beta‑ketothiolase
RA	3,814,624	A→G	6.1%	D328G (GAC→GGC)	PP_3368 →	MFS transporter
RA	3,814,627	T→A	5.9%	I329N (ATT→AAT)	PP_3368 →	MFS transporter
RA	3,814,630	C→T	6.2%	A330V (GCC→GTC)	PP_3368 →	MFS transporter
RA	3,823,903:1	+T	11.1%	coding (1246/1293 nt)	kguT ←	2‑ketogluconate transporter, putative
RA	3,823,966	A→C	64.5%	F395V (TTC→GTC)	kguT ←	2‑ketogluconate transporter, putative
RA	3,824,695	G→C	100%	L152V (CTG→GTG)	kguT ←	2‑ketogluconate transporter, putative
RA	3,824,717	C→T	82.4%	M144I (ATG→ATA)	kguT ←	2‑ketogluconate transporter, putative
RA	3,824,950	C→A	22.6%	V67L (GTG→TTG)	kguT ←	2‑ketogluconate transporter, putative
RA	3,827,929	C→A	100%	V28F (GTC→TTC)	ptxS ←	2‑ketogluconate utilization repressor
RA	3,865,805	C→T	6.0%	P921L (CCA→CTA) ‡	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,865,806	A→G	6.0%	P921P (CCA→CCG) ‡	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,922,236	A→G	5.8%	L499P (CTG→CCG)	acs ←	acyl‑CoA synthetase
RA	3,922,239	C→T	5.9%	R498Q (CGG→CAG)	acs ←	acyl‑CoA synthetase
RA	3,926,529	C→T	5.1%	G84D (GGC→GAC)	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,951,063	G→A	6.1%	P146L (CCG→CTG)	PP_3485 ←	hypothetical protein
RA	3,951,067:1	+A	7.5%	coding (433/642 nt)	PP_3485 ←	hypothetical protein
RA	3,951,074	Δ1 bp	7.6%	coding (426/642 nt)	PP_3485 ←	hypothetical protein
RA	3,951,079	T→C	7.6%	S141G (AGC→GGC)	PP_3485 ←	hypothetical protein
RA	3,953,071	A→C	14.4%	intergenic (‑69/+126)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,976,356	T→C	5.1%	N28S (AAC→AGC) ‡	PP_3503 ←	sigma‑54 dependent transcriptional regulator
RA	3,976,357	T→A	5.1%	N28Y (AAC→TAC) ‡	PP_3503 ←	sigma‑54 dependent transcriptional regulator
RA	3,976,358	G→A	5.2%	R27R (CGC→CGT)	PP_3503 ←	sigma‑54 dependent transcriptional regulator
RA	3,981,617	G→A	5.2%	T327M (ACG→ATG)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,981,619	G→T	5.3%	I326I (ATC→ATA)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,981,622	A→C	5.6%	I325M (ATT→ATG) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,981,624	T→C	5.1%	I325V (ATT→GTT) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,986,006	G→T	6.3%	intergenic (+34/+156)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,986,007	C→T	6.4%	intergenic (+35/+155)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,986,008	A→G	7.0%	intergenic (+36/+154)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,986,009	A→C	8.1%	intergenic (+37/+153)	ilvE → / ← PP_3512	branched‑chain‑amino acid aminotransferase/membrane protein
RA	3,990,968	A→T	6.0%	D507V (GAC→GTC)	oplA →	5‑oxoprolinase A
RA	3,990,977	A→C	6.0%	H510P (CAC→CCC)	oplA →	5‑oxoprolinase A
RA	4,000,269	A→C	5.2%	E330A (GAG→GCG)	PP_3526 →	AraC family transcriptional regulator
RA	4,000,272	A→G	5.1%	Q331R (CAA→CGA)	PP_3526 →	AraC family transcriptional regulator
RA	4,007,283	T→A	5.9%	R242W (AGG→TGG)	PP_3534 ←	LysR family transcriptional regulator
RA	4,024,772	C→G	5.0%	intergenic (‑501/+167)	PP_3547 ← / ← emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
RA	4,044,287	C→A	6.0%	L137I (CTC→ATC) ‡	PP_3563 →	hypothetical protein
RA	4,044,288	T→G	6.1%	L137R (CTC→CGC) ‡	PP_3563 →	hypothetical protein
RA	4,046,643	C→G	5.8%	G344A (GGG→GCG) ‡	PP_3566 ←	MFS transporter
RA	4,046,644	C→G	5.9%	G344R (GGG→CGG) ‡	PP_3566 ←	MFS transporter
RA	4,051,702	G→A	5.3%	V763M (GTG→ATG) ‡	quiA →	quinate dehydrogenase
RA	4,051,703	T→C	5.3%	V763A (GTG→GCG) ‡	quiA →	quinate dehydrogenase
RA	4,051,873	A→G	17.2%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,051,876	C→G	14.8%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,051,879	C→T	15.4%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,051,977	T→G	6.2%	L15R (CTG→CGG)	oprB‑III →	carbohydrate‑selective porin
RA	4,053,218	C→G	5.7%	intergenic (+16/+27)	oprB‑III → / ← PP_3571	carbohydrate‑selective porin/acetylornithine deacetylase
RA	4,067,967	A→C	5.6%	R1021R (CGT→CGG)	mdtC ←	multidrug transporter membrane protein
RA	4,075,575	G→A	5.7%	intergenic (‑147/+477)	mdtA ← / ← PP_3586	multidrug transporter membrane fusion protein/transposase
RA	4,075,576	T→C	5.7%	intergenic (‑148/+476)	mdtA ← / ← PP_3586	multidrug transporter membrane fusion protein/transposase
RA	4,081,429	T→A	8.7%	intergenic (‑267/+117)	sdaC ← / ← amaC	serine:H+ symport permease/D‑lysine aminotransferase
RA	4,143,134	T→A	6.8%	L44Q (CTG→CAG)	PP_3645 →	L‑proline amide hydrolase
RA	4,152,000	A→T	6.6%	intergenic (+33/‑364)	PP_3654 → / → PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,160,432	T→G	13.9%	L159R (CTG→CGG)	PP_3661 →	membrane protein
RA	4,160,437	A→C	16.4%	S161R (AGC→CGC)	PP_3661 →	membrane protein
RA	4,161,034	G→C	5.3%	intergenic (+16/‑193)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,161,048	A→G	9.4%	intergenic (+30/‑179)	PP_3661 → / → PP_3662	membrane protein/hypothetical protein
RA	4,164,069	T→A	5.2%	intergenic (‑47/+30)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,172,146	T→G	12.2%	intergenic (‑288/‑99)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,172,148	A→T	10.9%	intergenic (‑290/‑97)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,172,149	A→T	11.0%	intergenic (‑291/‑96)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,172,151	C→A	10.3%	intergenic (‑293/‑94)	katG ← / → PP_3669	catalase‑peroxidase/LysR family transcriptional regulator
RA	4,313,280	T→A	5.6%	F12I (TTT→ATT) ‡	PP_3784 →	hypothetical protein
RA	4,313,281	T→A	5.6%	F12Y (TTT→TAT) ‡	PP_3784 →	hypothetical protein
RA	4,316,697	Δ1 bp	7.4%	coding (933/1209 nt)	aspC →	aminotransferase
RA	4,316,701:1	+T	7.2%	coding (937/1209 nt)	aspC →	aminotransferase
RA	4,340,459	A→T	8.1%	intergenic (+113/+29)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,340,460	A→T	5.7%	intergenic (+114/+28)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,342,041	A→T	30.1%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,342,042	G→C	27.3%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,342,047	A→G	31.9%	intergenic (+66/‑265)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,342,048	C→T	30.0%	intergenic (+67/‑264)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,342,049	A→G	30.2%	intergenic (+68/‑263)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,342,050	C→T	30.0%	intergenic (+69/‑262)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,342,055	G→C	32.5%	intergenic (+74/‑257)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,342,056	A→T	29.3%	intergenic (+75/‑256)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,346,268	A→T	11.3%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,346,270	C→T	10.6%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,346,271	A→G	10.8%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,346,276	C→G	10.2%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,346,279	C→G	11.8%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,346,284	C→T	10.3%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,346,285	A→G	10.5%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,346,287	A→T	10.8%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,350,671	A→G	47.3%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,359,712	T→C	5.1%	intergenic (+92/‑162)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,359,713	G→A	5.1%	intergenic (+93/‑161)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,377,408	C→A	5.9%	A32S (GCG→TCG)	PP_5637 ←	hypothetical protein
RA	4,377,410	A→T	5.5%	V31D (GTC→GAC)	PP_5637 ←	hypothetical protein
RA	4,377,412	T→G	5.4%	R30R (CGA→CGC)	PP_5637 ←	hypothetical protein
RA	4,427,105	G→C	7.1%	intergenic (‑197/‑603)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,427,107	G→C	7.3%	intergenic (‑199/‑601)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,427,109	G→C	8.0%	intergenic (‑201/‑599)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,432,050	T→G	5.8%	intergenic (+37/‑147)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,432,051	G→T	5.4%	intergenic (+38/‑146)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,432,052	A→C	5.2%	intergenic (+39/‑145)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,432,053	C→A	5.3%	intergenic (+40/‑144)	PP_3924 → / → PP_3925	hypothetical protein/hypothetical protein
RA	4,433,489	G→A	6.5%	T63T (ACG→ACA)	PP_3926 →	short‑chain dehydrogenase
RA	4,433,492	T→C	6.4%	A64A (GCT→GCC)	PP_3926 →	short‑chain dehydrogenase
RA	4,465,919	A→T	5.7%	*139C (TGA→TGT)	PP_3956 →	hypothetical protein
RA	4,465,922	G→C	5.7%	intergenic (+3/+25)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,465,925	A→T	5.9%	intergenic (+6/+22)	PP_3956 → / ← betT‑III	hypothetical protein/choline/carnitine/betaine transporter BetTC
RA	4,479,779	T→G	5.9%	Q60P (CAG→CCG) ‡	PP_3968 ←	sensor histidine kinase
RA	4,479,780	G→C	5.4%	Q60E (CAG→GAG) ‡	PP_3968 ←	sensor histidine kinase
RA	4,479,783	G→C	5.7%	H59D (CAT→GAT)	PP_3968 ←	sensor histidine kinase
RA	4,479,784	C→A	6.3%	A58A (GCG→GCT)	PP_3968 ←	sensor histidine kinase
RA	4,498,633	T→A	5.0%	intergenic (+17/+35)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,498,634	A→G	5.6%	intergenic (+18/+34)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,498,637	C→T	5.0%	intergenic (+21/+31)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,498,638	T→A	5.0%	intergenic (+22/+30)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,505,755	C→T	5.1%	intergenic (+38/‑60)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,505,756	A→G	5.1%	intergenic (+39/‑59)	xanP → / → tusD	xanthine permease/sulfur transfer protein complex subunit TusD
RA	4,519,198	A→C	8.6%	intergenic (+69/+17)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,519,199	A→T	8.4%	intergenic (+70/+16)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,519,200	G→T	8.4%	intergenic (+71/+15)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,531,991	T→A	11.2%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,531,992	T→A	12.4%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,545,558	C→G	5.4%	S9S (TCC→TCG)	rnz →	ribonuclease Z
RA	4,545,561	C→G	5.4%	A10A (GCC→GCG)	rnz →	ribonuclease Z
RA	4,545,563	G→A	5.5%	G11E (GGG→GAG)	rnz →	ribonuclease Z
RA	4,553,940	A→T	7.3%	intergenic (+68/+113)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,553,941	C→G	7.3%	intergenic (+69/+112)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,553,942	A→T	8.2%	intergenic (+70/+111)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,588,023	A→G	7.5%	intergenic (+140/+77)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,588,040	T→G	6.1%	intergenic (+157/+60)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,588,048	T→G	8.4%	intergenic (+165/+52)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,613,027	A→G	5.1%	intergenic (+21/‑2086)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,613,032	A→T	5.4%	intergenic (+26/‑2081)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,613,037	C→T	5.5%	intergenic (+31/‑2076)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,671,699	G→C	5.7%	T21T (ACG→ACC)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,671,700	G→A	5.5%	V22M (GTG→ATG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,671,701	T→C	5.3%	V22A (GTG→GCG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,671,702	G→C	5.4%	V22V (GTG→GTC) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,677,305	G→T	10.8%	intergenic (+36/+68)	PP_4137 → / ← chrR	outer membrane siderophore receptor/chromate reductase
RA	4,683,757:1	+C	5.0%	coding (79/1431 nt)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,683,764	T→A	5.2%	L29* (TTG→TAG)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,700,782	G→C	5.5%	P625R (CCC→CGC) ‡	kdpD ←	sensor protein
RA	4,700,783	G→C	5.5%	P625A (CCC→GCC) ‡	kdpD ←	sensor protein
RA	4,707,381	T→A	8.8%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,707,382	T→A	7.6%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
JC	4,717,308	(GCCTGGCCCTGA)1→2	100%	coding (571/1932 nt)	PP_4173 →	two‑component system sensor histidine kinase/response regulator
RA	4,720,658	G→C	5.4%	intergenic (+34/+97)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,720,659	G→A	5.0%	intergenic (+35/+96)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,720,660	T→G	5.1%	intergenic (+36/+95)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,742,763	T→G	11.3%	intergenic (+32/+720)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,742,764	C→A	10.7%	intergenic (+33/+719)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,742,806	C→G	22.0%	intergenic (+75/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,742,808	T→A	22.3%	intergenic (+77/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,742,809	T→A	19.9%	intergenic (+78/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,742,811	C→G	21.0%	intergenic (+80/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,195:1	+C	100%	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,197	A→G	100%	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,199	C→T	100%	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,202	C→T	100%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,205	C→G	100%	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,207	2 bp→CT	100%	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,221	C→T	100%	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,223	A→C	100%	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,743,226	2 bp→GC	100%	intergenic (+495/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,760,103	G→C	5.1%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,760,108	G→C	5.8%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,763,949	T→A	5.7%	V214D (GTC→GAC)	pvdN →	pyoverdine biosynthesis‑like protein
RA	4,769,785	C→T	6.7%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,769,786	A→G	7.2%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,782,088	A→G	5.7%	V2398A (GTG→GCG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,782,089	C→T	5.7%	V2398M (GTG→ATG) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,798,571	A→G	12.6%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,798,579	C→T	17.8%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,798,581	G→C	19.1%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,798,584	G→C	16.9%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,798,586	A→G	16.8%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,798,594	C→T	12.8%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,839,247	C→T	5.7%	A429A (GCC→GCT)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,839,248	A→G	5.8%	S430G (AGC→GGC)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,844,791	T→G	5.2%	S316A (TCG→GCG)	ccoP‑II →	cbb3‑type cytochrome c oxidase subunit
RA	4,844,863	Δ1 bp	26.0%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,844,871:1	+G	26.8%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,850,120	T→C	6.8%	L81P (CTG→CCG) ‡	PP_4263 →	cytochrome biogenesis protein
RA	4,850,121	G→A	6.8%	L81L (CTG→CTA) ‡	PP_4263 →	cytochrome biogenesis protein
RA	4,862,776	G→T	7.6%	L81M (CTG→ATG)	ligA ←	DNA ligase
RA	4,862,780	G→C	7.6%	L79L (CTC→CTG)	ligA ←	DNA ligase
RA	4,862,784	A→C	7.6%	M78R (ATG→AGG)	ligA ←	DNA ligase
RA	4,863,154	A→C	9.4%	intergenic (‑138/+99)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,863,160	A→G	7.9%	intergenic (‑144/+93)	ligA ← / ← PP_4275	DNA ligase/cell division protein ZipA
RA	4,867,990	G→T	5.1%	R171R (CGC→CGA)	PP_4277 ←	GntR family transcriptional regulator
RA	4,867,997	T→A	5.0%	D169V (GAC→GTC)	PP_4277 ←	GntR family transcriptional regulator
RA	4,888,141	T→A	5.9%	intergenic (+53/+70)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,888,157	A→T	6.0%	intergenic (+69/+54)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,898,392	G→A	5.7%	intergenic (+58/‑150)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,898,412	G→A	10.6%	intergenic (+78/‑130)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,902,032	A→G	11.3%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,902,036	G→A	10.8%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,902,037	T→C	11.3%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,902,041	C→T	11.5%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,935,841	T→G	5.2%	Q192P (CAG→CCG)	flhF ←	flagellar biosynthesis protein FlhF
RA	4,952,939	T→G	12.6%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,952,940	C→A	9.7%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,982,559	T→A	5.0%	intergenic (‑31/+40)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,988,018	C→G	6.9%	P97R (CCG→CGG)	flgA →	flagella basal body P‑ring formation protein
RA	5,079,204	G→T	7.0%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,079,207	A→C	7.0%	intergenic (+32/+76)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,080,847	G→C	5.3%	intergenic (‑122/+275)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,081,096	T→A	6.0%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,081,099	T→A	6.7%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,082,248	A→T	5.0%	intergenic (‑143/+25)	csrA ← / ← lysC	carbon storage regulator/aspartokinase
RA	5,082,249	A→T	5.5%	intergenic (‑144/+24)	csrA ← / ← lysC	carbon storage regulator/aspartokinase
RA	5,099,195	G→T	5.3%	intergenic (+216/+76)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,099,202	G→T	5.4%	intergenic (+223/+69)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,099,210	A→C	8.0%	intergenic (+231/+61)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,099,211	G→C	5.5%	intergenic (+232/+60)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,099,217	A→C	5.3%	intergenic (+238/+54)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,099,220	G→C	5.8%	intergenic (+241/+51)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,101,905	T→G	12.4%	intergenic (+21/+132)	PP_4488 → / ← phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
RA	5,120,165	T→G	5.0%	intergenic (+27/‑32)	PP_4504 → / → PP_4505	hypothetical protein/sensor histidine kinase
RA	5,127,066	A→T	6.1%	intergenic (+70/‑112)	PP_4511 → / → PP_4512	AraC family transcriptional regulator/DMT superfamily permease
RA	5,151,406	C→G	8.4%	intergenic (‑422/+26)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,151,407	T→G	8.6%	intergenic (‑423/+25)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,151,410	C→A	8.7%	intergenic (‑426/+22)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,151,411	C→G	9.3%	intergenic (‑427/+21)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,151,414	C→T	9.0%	intergenic (‑430/+18)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,164,566	T→G	7.7%	intergenic (+119/+82)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,164,592	C→G	10.5%	intergenic (+145/+56)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,164,596	A→T	7.4%	intergenic (+149/+52)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,164,597	C→A	6.8%	intergenic (+150/+51)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,175,214	T→C	14.3%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,175,217	G→C	14.6%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,175,218	G→C	14.6%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,175,221	G→A	14.8%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,184,029	G→T	11.1%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,184,035	T→G	12.6%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,184,036	C→A	13.3%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,184,042	A→C	11.6%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,194,737	C→G	5.3%	intergenic (+148/‑54)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,194,744	T→A	5.8%	intergenic (+155/‑47)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,194,745	T→A	5.2%	intergenic (+156/‑46)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,196,857	T→G	13.9%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,196,858	C→A	13.3%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
JC	5,203,538	Δ98 bp	36.1%	intergenic (‑54/‑29)	PP_4582 ← / → PP_4583	membrane protein/putative Peptidase
RA	5,214,457	A→G	7.9%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,214,458	C→A	7.9%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,214,461	T→G	7.9%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,214,462	C→T	8.0%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,214,474	T→C	5.6%	intergenic (+68/+26)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,231,149	G→A	6.7%	intergenic (‑121/+55)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,231,161	Δ1 bp	10.1%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,231,165	C→G	10.1%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,231,168	C→G	9.7%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,231,171:1	+C	10.5%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,258,835	T→A	5.3%	intergenic (+17/+28)	PP_5703 → / ← PP_4634	type III effector protein HopJ/alpha/beta family hydrolase
RA	5,266,260:1	+T	8.0%	intergenic (‑44/+40)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,266,263	T→G	8.0%	intergenic (‑47/+37)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,266,266	C→A	8.0%	intergenic (‑50/+34)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,266,269	Δ1 bp	7.7%	intergenic (‑53/+31)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,270,921	T→A	5.5%	intergenic (+19/+17)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,270,922	T→A	5.2%	intergenic (+20/+16)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,290,379	T→A	7.9%	intergenic (‑90/+94)	PP_4660 ← / ← mdaB	LysR family transcriptional regulator/drug activity modulator B
RA	5,290,380	T→A	7.5%	intergenic (‑91/+93)	PP_4660 ← / ← mdaB	LysR family transcriptional regulator/drug activity modulator B
RA	5,291,558	G→C	5.0%	L246L (CTC→CTG) ‡	PP_4663 ←	transmembrane protein
RA	5,291,559	A→T	7.5%	L246H (CTC→CAC) ‡	PP_4663 ←	transmembrane protein
RA	5,291,560	G→C	5.0%	L246V (CTC→GTC) ‡	PP_4663 ←	transmembrane protein
RA	5,309,314	T→C	5.5%	intergenic (‑93/+93)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,315,246	C→G	6.0%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,315,249	C→G	7.4%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,335,225	A→C	5.1%	intergenic (+87/‑156)	gluQ → / → PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
RA	5,335,226	T→C	6.1%	intergenic (+88/‑155)	gluQ → / → PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
RA	5,335,236	A→G	8.6%	intergenic (+98/‑145)	gluQ → / → PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
RA	5,335,237	G→A	9.9%	intergenic (+99/‑144)	gluQ → / → PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
RA	5,340,020	C→G	9.0%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,340,023	C→G	9.3%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,346,454	C→G	18.7%	intergenic (+59/‑119)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,353,312	A→C	7.3%	intergenic (+21/+55)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,353,315	G→T	6.8%	intergenic (+24/+52)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,353,947	G→T	5.2%	intergenic (‑230/+34)	PP_4707 ← / ← pnp	OsmY‑like protein/polyribonucleotide nucleotidyltransferase
RA	5,353,950	A→C	6.1%	intergenic (‑233/+31)	PP_4707 ← / ← pnp	OsmY‑like protein/polyribonucleotide nucleotidyltransferase
RA	5,367,894	G→A	39.9%	A211V (GCG→GTG)	ftsH ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,367,931	G→A	46.3%	P199S (CCC→TCC)	ftsH ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,370,641	A→C	5.1%	A13A (GCT→GCG)	greA ←	transcription elongation factor GreA
RA	5,392,401	T→G	5.6%	intergenic (+520/‑202)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,432,362	A→G	5.9%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,432,366	A→G	5.5%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,432,367:1	+A	6.8%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,432,374	Δ1 bp	5.6%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,432,376	C→T	5.6%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,432,380	C→T	6.1%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,448,259	T→G	12.8%	L145R (CTG→CGG)	thiE →	thiamine‑phosphate synthase
RA	5,460,862:1	+A	9.6%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,460,868	Δ1 bp	9.8%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,461,530	T→G	7.7%	intergenic (+18/‑22)	PP_4795 → / → holA	lipoprotein/DNA polymerase III subunit delta
RA	5,483,203	T→G	17.3%	L241R (CTA→CGA)	PP_4819 →	hypothetical protein
RA	5,487,120	A→G	13.1%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,487,123	A→G	16.6%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,487,124	T→C	13.6%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,487,129	G→A	14.0%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,487,132	T→C	17.2%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,487,137	G→A	10.6%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,487,138	C→T	9.6%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,487,141	C→T	8.9%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,493,464	T→C	5.1%	intergenic (‑30/+22)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,505,112	C→G	6.5%	A31G (GCC→GGC)	oprC →	copper receptor OprC
RA	5,505,118	C→A	6.3%	P33H (CCT→CAT) ‡	oprC →	copper receptor OprC
RA	5,505,119	T→G	5.9%	P33P (CCT→CCG) ‡	oprC →	copper receptor OprC
RA	5,508,456	T→G	10.7%	M438R (ATG→AGG)	PP_4839 →	iron‑regulated membrane protein
RA	5,508,568	G→C	10.1%	intergenic (+57/‑142)	PP_4839 → / → cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,509,577	G→C	5.5%	A290P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,511,875	T→G	11.8%	L35R (CTG→CGG)	urtB →	urea ABC transporter permease
RA	5,515,265	A→T	8.0%	intergenic (+73/‑81)	urtD → / → urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
RA	5,520,704	T→A	5.0%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,520,705	T→A	5.0%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,520,706	T→A	5.0%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,527,449	T→C	7.1%	R89R (CGT→CGC)	PP_4858 →	hypothetical protein
RA	5,539,025	A→T	5.5%	intergenic (+32/+71)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,028	A→G	8.6%	intergenic (+35/+68)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,031	A→T	13.0%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,032	G→C	7.7%	intergenic (+39/+64)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,037	A→G	10.0%	intergenic (+44/+59)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,038	A→G	8.0%	intergenic (+45/+58)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,039	C→T	8.7%	intergenic (+46/+57)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,040	C→T	8.4%	intergenic (+47/+56)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,045	G→C	15.1%	intergenic (+52/+51)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,046	A→T	7.6%	intergenic (+53/+50)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,539,049	C→T	7.5%	intergenic (+56/+47)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,540,538	A→T	5.6%	intergenic (+58/+63)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,540,539	A→T	6.2%	intergenic (+59/+62)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,540,541	G→C	6.2%	intergenic (+61/+60)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,540,543	A→T	5.4%	intergenic (+63/+58)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,540,544	A→T	7.6%	intergenic (+64/+57)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,540,547	G→T	6.1%	intergenic (+67/+54)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,554,883	T→G	5.1%	intergenic (+576/+85)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,554,885	C→A	9.8%	intergenic (+578/+83)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,557,574	T→A	10.0%	intergenic (‑80/+94)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,559,758	A→C	10.3%	intergenic (‑156/+175)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,561,589	T→A	5.1%	Q294L (CAG→CTG)	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,594,947	G→T	5.4%	Y360* (TAC→TAA) ‡	PP_4921 ←	NCS1 family transporter
RA	5,594,948	T→A	5.1%	Y360F (TAC→TTC) ‡	PP_4921 ←	NCS1 family transporter
RA	5,594,949	A→C	5.3%	Y360D (TAC→GAC) ‡	PP_4921 ←	NCS1 family transporter
RA	5,636,430	T→G	5.5%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,636,431	C→A	5.3%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,643,428	C→G	5.3%	S373C (TCC→TGC)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,645,234	G→A	6.5%	intergenic (+46/‑77)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,645,235	C→T	7.6%	intergenic (+47/‑76)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,645,236	A→G	7.2%	intergenic (+48/‑75)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,645,240	A→C	7.7%	intergenic (+52/‑71)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,645,243	G→T	7.1%	intergenic (+55/‑68)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,645,247	C→T	6.8%	intergenic (+59/‑64)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,645,248	A→G	6.7%	intergenic (+60/‑63)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,645,249	T→C	7.8%	intergenic (+61/‑62)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,653,347	T→G	6.6%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,653,350	C→A	6.2%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,654,932	G→A	5.2%	intergenic (‑60/+101)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,654,936	A→T	7.7%	intergenic (‑64/+97)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,654,938	T→C	5.0%	intergenic (‑66/+95)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,654,941	A→T	7.3%	intergenic (‑69/+92)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,654,944	C→A	5.4%	intergenic (‑72/+89)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,654,945	T→C	5.5%	intergenic (‑73/+88)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,657,599:1	+A	14.8%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,657,604	T→G	17.9%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,657,609	C→A	17.8%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,657,614	Δ1 bp	15.4%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,661,657	T→A	5.2%	L243Q (CTG→CAG)	metK →	methionine adenosyltransferase
RA	5,661,659	A→T	5.2%	T244S (ACT→TCT) ‡	metK →	methionine adenosyltransferase
RA	5,661,661	T→A	5.1%	T244T (ACT→ACA) ‡	metK →	methionine adenosyltransferase
RA	5,699,294	G→C	5.2%	intergenic (+26/‑51)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,699,296	T→G	5.2%	intergenic (+28/‑49)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,703,198	G→C	5.9%	intergenic (+18/‑45)	phaA → / → phaB	poly(3‑hydroxyalkanoate) polymerase/poly(3‑hydroxyalkanoate) depolymerase
RA	5,703,200	C→G	5.6%	intergenic (+20/‑43)	phaA → / → phaB	poly(3‑hydroxyalkanoate) polymerase/poly(3‑hydroxyalkanoate) depolymerase
RA	5,708,097	A→G	6.8%	H46R (CAC→CGC) ‡	PP_5009 →	hypothetical protein
RA	5,708,098	C→G	6.8%	H46Q (CAC→CAG) ‡	PP_5009 →	hypothetical protein
RA	5,708,099	C→T	6.8%	R47C (CGC→TGC)	PP_5009 →	hypothetical protein
RA	5,723,422	A→T	5.1%	intergenic (+25/+85)	PP_5021 → / ← glnQ	methyl‑accepting chemotaxis transducer/glutamine transport ATP‑binding protein GlnQ
RA	5,726,262	A→C	8.6%	intergenic (‑186/+108)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,726,280	G→T	5.3%	intergenic (‑204/+90)	PP_5024 ← / ← opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
RA	5,739,577	G→C	10.0%	intergenic (‑154/+48)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,739,580	G→C	9.1%	intergenic (‑157/+45)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,742,435	G→A	17.9%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,742,445	T→G	33.8%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,742,448	A→T	28.3%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,742,449	A→T	29.2%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,742,452	C→A	27.2%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,742,462	T→C	18.9%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,745,309	G→A	7.3%	intergenic (‑164/+83)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,745,313	T→C	8.9%	intergenic (‑168/+79)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,745,327	A→G	7.9%	intergenic (‑182/+65)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,745,328	C→T	7.8%	intergenic (‑183/+64)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,745,329	A→C	10.1%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,745,351	A→C	8.7%	intergenic (‑206/+41)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,748,463	G→C	6.3%	intergenic (+32/+67)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,748,466	G→C	6.8%	intergenic (+35/+64)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,753,697	G→T	7.9%	intergenic (‑157/‑314)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,703	A→G	12.7%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,707	G→T	12.6%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,708	G→T	12.8%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,713	A→C	13.2%	intergenic (‑173/‑298)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,714	A→C	13.1%	intergenic (‑174/‑297)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,718	C→T	13.4%	intergenic (‑178/‑293)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,724	A→C	12.3%	intergenic (‑184/‑287)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,758,660	A→C	9.3%	intergenic (+359/‑329)	glnG → / → PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
RA	5,758,669	A→G	6.0%	intergenic (+368/‑320)	glnG → / → PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
RA	5,779,379	G→T	5.3%	intergenic (+20/+23)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,779,380	C→G	5.4%	intergenic (+21/+22)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,779,381	A→C	5.4%	intergenic (+22/+21)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,792,111	G→T	6.5%	intergenic (+12/+56)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,792,115	G→A	6.3%	intergenic (+16/+52)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,792,121	A→T	10.1%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,792,128	A→G	10.9%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,792,129	C→G	11.0%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,792,130	C→T	11.0%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,792,137	A→T	10.9%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,800,176	T→C	5.2%	intergenic (‑299/+75)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,800,179	G→A	5.2%	intergenic (‑302/+72)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,800,696	G→C	5.1%	A382G (GCC→GGC)	PP_5077 ←	hypothetical protein
RA	5,800,698	A→C	5.1%	P381P (CCT→CCG)	PP_5077 ←	hypothetical protein
RA	5,800,704	A→C	5.1%	P379P (CCT→CCG) ‡	PP_5077 ←	hypothetical protein
RA	5,800,705	G→T	5.0%	P379H (CCT→CAT) ‡	PP_5077 ←	hypothetical protein
RA	5,809,962	A→G	5.6%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,809,963	T→C	5.5%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,809,964	G→A	5.5%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,809,965	C→T	5.5%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,826,690	T→G	7.6%	intergenic (+136/+38)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,826,691	T→A	7.0%	intergenic (+137/+37)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,826,692	T→A	6.7%	intergenic (+138/+36)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,826,693	C→A	6.9%	intergenic (+139/+35)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,829,696	G→C	5.2%	A211P (GCC→CCC)	mtgA →	monofunctional biosynthetic peptidoglycan transglycosylase
RA	5,851,024	C→T	5.7%	intergenic (+21/‑250)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,851,025	C→G	5.4%	intergenic (+22/‑249)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,851,026	A→G	5.4%	intergenic (+23/‑248)	rlmI → / → ilvD	ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA	5,858,755	C→T	5.3%	A235V (GCC→GTC)	PP_5133 →	membrane protein
RA	5,858,758	T→G	5.1%	V236G (GTG→GGG)	PP_5133 →	membrane protein
RA	5,858,761	C→A	5.2%	P237H (CCC→CAC)	PP_5133 →	membrane protein
RA	5,858,764	A→G	5.3%	D238G (GAC→GGC)	PP_5133 →	membrane protein
RA	5,868,674	G→T	5.2%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,872,290	A→T	8.4%	intergenic (+73/+61)	PP_5144 → / ← ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
RA	5,876,797	G→T	5.1%	S451* (TCG→TAG) ‡	ilvA‑II ←	threonine deaminase
RA	5,876,798	A→C	5.5%	S451A (TCG→GCG) ‡	ilvA‑II ←	threonine deaminase
RA	5,878,982	T→A	6.6%	intergenic (+26/+79)	rpiA → / ← PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
RA	5,878,998	G→C	7.5%	intergenic (+42/+63)	rpiA → / ← PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
RA	5,899,748	A→G	7.6%	intergenic (‑170/+64)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,899,751	G→A	8.0%	intergenic (‑173/+61)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,899,756	C→G	9.7%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,899,757	G→C	7.7%	intergenic (‑179/+55)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,899,760	G→C	8.9%	intergenic (‑182/+52)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,899,761	C→G	8.9%	intergenic (‑183/+51)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,899,766	T→C	9.7%	intergenic (‑188/+46)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,899,769	C→T	7.5%	intergenic (‑191/+43)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,905,142	G→T	11.7%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,905,143	A→C	18.3%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,905,785	T→G	12.5%	intergenic (+63/+44)	PP_5176 → / ← spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
RA	5,905,796	T→G	12.1%	intergenic (+74/+33)	PP_5176 → / ← spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
RA	5,926,529	A→C	13.1%	intergenic (‑121/+76)	gcvP‑II ← / ← gcvH‑II	glycine dehydrogenase/glycine cleavage system protein H
RA	5,926,569	A→T	11.7%	intergenic (‑161/+36)	gcvP‑II ← / ← gcvH‑II	glycine dehydrogenase/glycine cleavage system protein H
RA	5,929,914	T→G	7.6%	intergenic (‑42/+111)	PP_5195 ← / ← fbpA	iron ABC transporter permease/iron ABC transporter substrate‑binding protein
RA	5,970,415	A→C	5.9%	L45L (CTT→CTG) ‡	PP_5723 ←	hypothetical protein
RA	5,970,416	A→T	6.6%	L45H (CTT→CAT) ‡	PP_5723 ←	hypothetical protein
RA	5,970,417	G→T	6.4%	L45I (CTT→ATT) ‡	PP_5723 ←	hypothetical protein
RA	5,970,421	C→A	5.2%	G43G (GGG→GGT)	PP_5723 ←	hypothetical protein
RA	5,986,414	T→C	15.3%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,986,420	G→A	13.9%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,986,422	T→C	13.4%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,986,425	G→A	13.2%	intergenic (+43/+46)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,986,433	G→A	12.6%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,990,787	G→A	30.6%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,797	T→C	28.9%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,802	C→T	25.9%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,803	G→T	25.8%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,804	C→T	25.9%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,807	A→G	25.8%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,813	G→C	27.0%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,815	C→G	27.6%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,818	C→T	26.7%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,822	C→G	30.2%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,826	C→T	30.2%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,828	C→T	28.7%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,867	C→A	26.2%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,872	C→T	27.5%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,873	A→G	27.6%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,883	T→C	29.9%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,990,889	Δ1 bp	29.5%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,999,167:1	+G	10.4%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,999,172	Δ1 bp	10.7%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,002,896	A→T	5.0%	intergenic (+25/+84)	PP_5256 → / ← amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
RA	6,002,899	C→A	7.1%	intergenic (+28/+81)	PP_5256 → / ← amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
RA	6,006,965	T→G	13.8%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,006,972	G→C	17.2%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,006,975	A→T	16.5%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,006,978	G→C	17.4%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,006,985	C→A	10.0%	intergenic (+45/‑131)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,011,117:1	+G	12.0%	intergenic (+36/+46)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,011,121	T→C	10.9%	intergenic (+40/+42)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,011,122	T→C	11.6%	intergenic (+41/+41)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,011,127	G→A	10.3%	intergenic (+46/+36)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,011,128	G→A	9.9%	intergenic (+47/+35)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,015,814	G→A	10.3%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,816	A→G	10.4%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,823	G→C	10.8%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,824	T→G	10.5%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,825	C→T	10.5%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,830	A→G	9.0%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,831	C→A	9.6%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,832	G→C	11.1%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,839	C→T	9.8%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,015,841	T→C	10.9%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,023,678	T→G	6.5%	intergenic (‑51/‑93)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,023,679	C→A	5.9%	intergenic (‑52/‑92)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,025,137	G→A	5.7%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,025,138	T→C	5.7%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,082,966	T→A	12.8%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,082,967	T→A	13.0%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,094,120	A→C	8.7%	E189D (GAA→GAC)	PP_5343 →	putative Transcriptional regulator
RA	6,106,031	T→A	5.1%	intergenic (+31/‑83)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,110,313	G→C	6.7%	W23C (TGG→TGC)	PP_5358 →	hypothetical protein
RA	6,113,166	G→C	6.2%	P108A (CCA→GCA)	PP_5361 ←	protein P47K
RA	6,113,955	T→A	7.1%	H118Q (CAT→CAA)	PP_5362 →	hypothetical protein
RA	6,131,148	C→T	5.5%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,131,151	A→T	5.4%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,131,154	A→G	5.6%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,131,164	G→T	5.2%	intergenic (+48/+19)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,175,181	A→G	5.2%	intergenic (‑122/+68)	PP_5410 ← / ← glmU	DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	6183852	6183858	7	207 [0]	[0] NA	atpI/–	ATP synthase protein I/–

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1 =	0 (0.000)	188 (0.950)	106/276	NT	100%	intergenic (–/+146)	–/parB	–/chromosome‑partitioning protein
	?	NC_002947	= 6183851	0 (0.000)					intergenic (‑3/–)	atpI/–	ATP synthase protein I/–
*	?	NC_002947	= 86765	136 (0.690)	13 (0.070)	5/244	NT	9.6%	intergenic (‑48/+97)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	= 86824	125 (0.720)					intergenic (‑107/+38)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	90359 =	196 (1.000)	17 (0.100)	13/244	NT	10.2%	intergenic (+34/+88)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	90414 =	125 (0.720)					intergenic (+89/+33)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
*	?	NC_002947	100443 =	150 (0.760)	9 (0.050)	6/242	NT	5.9%	intergenic (‑35/+87)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	100525 =	153 (0.890)					intergenic (‑117/+5)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	= 174906	NA (NA)	6 (0.030)	3/266	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 176400	NA (NA)	61 (0.320) +GAAA	11/268	NT	27.6%	intergenic (+44/‑419)	PP_5SA/PP_16SB	5S ribosomal RNA/16S ribosomal RNA
	?	NC_002947	= 182013	165 (0.840)					intergenic (+2/+63)	PP_5SB/PP_0160	5S ribosomal RNA/ferrioxamine receptor
*	?	NC_002947	295685 =	154 (0.780)	16 (0.090)	11/258	NT	10.2%	intergenic (+32/+110)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	295774 =	138 (0.750)					intergenic (+121/+21)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
*	?	NC_002947	= 295698	149 (0.760)	10 (0.050)	7/268	NT	6.4%	intergenic (+45/+97)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	= 295759	148 (0.770)					intergenic (+106/+36)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
*	?	NC_002947	= 312731	158 (0.800)	15 (0.080)	7/248	NT	9.1%	coding (483/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312759	158 (0.890)					coding (455/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	363530 =	161 (0.820)	9 (0.050)	7/242	NT	6.4%	intergenic (‑45/+122)	lcdH/PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
	?	NC_002947	363623 =	122 (0.710)					intergenic (‑138/+29)	lcdH/PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
*	?	NC_002947	= 380858	108 (0.550)	6 (0.040)	6/230	NT	6.2%	intergenic (+45/+64)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 380892	93 (0.570)					intergenic (+79/+30)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 401316	NA (NA)	17 (0.100)	12/250	NT	13.8%	coding (899/1059 nt)	PP_0334	transposase
	?	NC_002947	= 401372	117 (0.590)					coding (955/1059 nt)	PP_0334	transposase
*	?	NC_002947	414130 =	138 (0.700)	7 (0.040)	7/260	NT	5.0%	intergenic (+147/‑56)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	414167 =	134 (0.720)					intergenic (+184/‑19)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
*	?	NC_002947	478264 =	126 (0.640)	11 (0.070)	4/216	NT	10.9%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	81 (0.530)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	527045 =	NA (NA)	6 (0.030)	3/272	NT	NA	noncoding (280/2902 nt)	PP_23SC	23S ribosomal RNA
	?	NC_002947	700076 =	NA (NA)					noncoding (223/2902 nt)	PP_23SD	23S ribosomal RNA
*	?	NC_002947	624412 =	190 (0.960)	10 (0.050)	8/270	NT	5.3%	coding (498/702 nt)	PP_0537	transcriptional regulator
	?	NC_002947	624448 =	174 (0.900)					coding (462/702 nt)	PP_0537	transcriptional regulator
*	?	NC_002947	= 668084	115 (0.580)	9 (0.060)	9/228	NT	7.8%	intergenic (+45/+107)	yfhM/PP_0571	lipoprotein/membrane protein
	?	NC_002947	= 668153	118 (0.730)					intergenic (+114/+38)	yfhM/PP_0571	lipoprotein/membrane protein
*	?	NC_002947	726899 =	94 (0.480)	9 (0.050)	9/248	NT	8.8%	intergenic (‑143/+124)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
	?	NC_002947	726986 =	102 (0.580)					intergenic (‑230/+37)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
*	?	NC_002947	= 742614	NA (NA)	6 (0.030)	3/266	NT	NA	coding (712/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 1426852	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 742796	NA (NA)	6 (0.030)	5/262	NT	NA	coding (894/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 742822	NA (NA)					coding (920/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 745617	NA (NA)	16 (0.080)	9/274	NT	NA	coding (885/1533 nt)	PP_0637	transposase
	?	NC_002947	= 745658	NA (NA)					coding (844/1533 nt)	PP_0637	transposase
*	?	NC_002947	= 746763	NA (NA)	6 (0.030)	5/260	NT	NA	coding (114/357 nt)	PP_0638	transposase
	?	NC_002947	= 746782	NA (NA)					coding (95/357 nt)	PP_0638	transposase
*	?	NC_002947	786595 =	171 (0.870)	17 (0.090)	11/254	NT	9.8%	intergenic (+14/‑291)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	786703 =	156 (0.860)					intergenic (+122/‑183)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
*	?	NC_002947	= 786605	176 (0.890)	15 (0.080)	9/254	NT	8.6%	intergenic (+24/‑281)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	= 786691	156 (0.860)					intergenic (+110/‑195)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
*	?	NC_002947	796828 =	104 (0.530)	11 (0.060)	11/244	NT	10.5%	intergenic (+27/‑163)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
	?	NC_002947	796898 =	96 (0.550)					intergenic (+97/‑93)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
*	?	NC_002947	= 796843	102 (0.520)	11 (0.060)	8/244	NT	10.6%	intergenic (+42/‑148)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
	?	NC_002947	= 796881	96 (0.550)					intergenic (+80/‑110)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
*	?	NC_002947	867923 =	137 (0.700)	18 (0.100)	6/250	NT	11.7%	intergenic (+18/+159)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	868013 =	148 (0.830)					intergenic (+108/+69)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	= 867935	137 (0.700)	19 (0.110)	5/250	NT	12.3%	intergenic (+30/+147)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	= 867999	148 (0.830)					intergenic (+94/+83)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	917692 =	218 (1.110)	14 (0.080)	9/254	NT	6.8%	intergenic (‑123/+76)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
	?	NC_002947	917754 =	183 (1.010)					intergenic (‑185/+14)	PP_0798/opdC	GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
*	?	NC_002947	943826 =	50 (0.250)	5 (0.030)	3/264	NT	6.9%	coding (1799/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	943866 =	88 (0.470)					coding (1759/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	1025270 =	79 (0.400)	10 (0.060)	6/222	NT	12.5%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1025363 =	76 (0.480)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1025296	75 (0.380)	9 (0.060)	7/222	NT	11.7%	intergenic (‑147/+82)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1025335	76 (0.480)					intergenic (‑186/+43)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1037796	106 (0.540)	10 (0.060)	5/230	NT	8.9%	intergenic (+38/+78)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	= 1037828	116 (0.710)					intergenic (+70/+46)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
*	?	NC_002947	1114875 =	100 (0.510)	16 (0.100)	9/226	NT	17.9%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114951 =	65 (0.400)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	= 1126618	87 (0.440)	12 (0.070)	7/234	NT	12.9%	intergenic (‑67/+83)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	= 1126634	88 (0.530)					intergenic (‑83/+67)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
*	?	NC_002947	1170750 =	129 (0.660)	9 (0.050)	6/254	NT	7.4%	intergenic (‑335/+98)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
	?	NC_002947	1170834 =	108 (0.600)					intergenic (‑419/+14)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
*	?	NC_002947	1273256 =	147 (0.750)	8 (0.050)	7/246	NT	5.6%	intergenic (+41/+127)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	1273345 =	137 (0.780)					intergenic (+130/+38)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	= 1273270	148 (0.750)	13 (0.070)	4/246	NT	8.8%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1273329	137 (0.780)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	1311713 =	105 (0.530)	11 (0.060)	6/250	NT	11.0%	intergenic (‑175/+103)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	1311798 =	82 (0.460)					intergenic (‑260/+18)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
*	?	NC_002947	1330943 =	NA (NA)	7 (0.040)	6/266	NT	NA	coding (162/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	1330987 =	NA (NA)					coding (206/1644 nt)	PP_1157	acetolactate synthase
*	?	NC_002947	= 1409101	72 (0.370)	14 (0.080)	7/240	NT	15.2%	intergenic (+39/‑236)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	= 1409127	94 (0.550)					intergenic (+65/‑210)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
*	?	NC_002947	1419553 =	43 (0.220)	25 (0.170)	10/212	NT	38.2%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419647 =	48 (0.320)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1419584	47 (0.240)	15 (0.100)	9/212	NT	26.3%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419614	48 (0.320)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1426821	NA (NA)	11 (0.060)	5/266	NT	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426852	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	= 1431721	187 (0.950)	15 (0.080)	7/264	NT	7.1%	coding (158/336 nt)	PP_1253	ArsR family transcriptional regulator
	?	NC_002947	= 1431746	211 (1.120)					coding (133/336 nt)	PP_1253	ArsR family transcriptional regulator
*	?	NC_002947	1487013 =	51 (0.260)	22 (0.140)	12/216	NT	32.6%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487103 =	51 (0.330)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1487042	49 (0.250)	17 (0.110)	9/216	NT	27.6%	intergenic (+51/+79)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	= 1487072	51 (0.330)					intergenic (+81/+49)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1499465	59 (0.300)	9 (0.050)	3/230	NT	14.0%	intergenic (+35/‑131)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1499502	61 (0.370)					intergenic (+72/‑94)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	1531788 =	67 (0.340)	6 (0.040)	6/228	NT	10.3%	coding (130/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	1531884 =	49 (0.300)					coding (34/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	= 1531811	66 (0.340)	7 (0.040)	4/228	NT	11.9%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531859	49 (0.300)					coding (59/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	= 1731232	58 (0.290)	10 (0.060)	7/220	NT	14.4%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731268	73 (0.470)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	= 1799915	130 (0.660)	15 (0.090)	7/230	NT	11.9%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799957	114 (0.690)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
*	?	NC_002947	= 1811479	151 (0.770)	8 (0.050)	6/230	NT	6.0%	intergenic (+44/+84)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
	?	NC_002947	= 1811513	123 (0.750)					intergenic (+78/+50)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
*	?	NC_002947	= 1821774	NA (NA)	24 (0.170) +40 bp	5/196	NT	25.6%	intergenic (+73/‑293)	PP_1624/PP_mr22	group II intron‑encoding maturase/PrrB_RsmZ ncRNA
	?	NC_002947	= 2073199	98 (0.500)					intergenic (+186/+41)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	1838113 =	164 (0.830)	19 (0.100)	9/256	NT	11.1%	intergenic (+18/+86)	PP_1642/PP_1643	hypothetical protein/membrane protein
	?	NC_002947	1838195 =	151 (0.830)					intergenic (+100/+4)	PP_1642/PP_1643	hypothetical protein/membrane protein
*	?	NC_002947	1899249 =	158 (0.800)	24 (0.130)	9/256	NT	13.9%	intergenic (+277/‑243)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899331 =	151 (0.830)					intergenic (+359/‑161)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	= 1899258	168 (0.850)	11 (0.060)	7/256	NT	6.7%	intergenic (+286/‑234)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	= 1899320	151 (0.830)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1906724 =	55 (0.280)	8 (0.050)	6/224	NT	12.7%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1906818 =	65 (0.410)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	= 1947843	67 (0.340)	10 (0.060)	6/224	NT	13.6%	intergenic (‑61/+109)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	= 1947910	73 (0.460)					intergenic (‑128/+42)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
*	?	NC_002947	1967188 =	28 (0.140)	13 (0.090)	7/210	NT	31.6%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967284 =	35 (0.230)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	= 1967220	29 (0.150)	16 (0.110)	7/210	NT	35.9%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1967250	35 (0.230)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	1970763 =	107 (0.540)	16 (0.100)	8/236	NT	13.5%	intergenic (+14/‑252)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	1970865 =	114 (0.680)					intergenic (+116/‑150)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	= 1970782	103 (0.520)	28 (0.170)	14/236	NT	21.7%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1970844	114 (0.680)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	1976242 =	184 (0.930)	12 (0.070)	9/250	NT	7.1%	intergenic (+27/‑138)	pheA/PP_1770	bifunctional chorismate mutase/prephenate dehydratase/3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1976320 =	148 (0.830)					intergenic (+105/‑60)	pheA/PP_1770	bifunctional chorismate mutase/prephenate dehydratase/3‑phosphoshikimate 1‑carboxyvinyltransferase
*	?	NC_002947	2032853 =	NA (NA)	6 (0.030)	3/264	NT	11.3%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2032878 =	49 (0.250)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
*	?	NC_002947	2050759 =	114 (0.580)	12 (0.070)	8/242	NT	10.8%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2050850 =	99 (0.570)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2050775	114 (0.580)	11 (0.060)	7/242	NT	10.0%	intergenic (+49/+90)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	= 2050832	99 (0.570)					intergenic (+106/+33)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	2052524 =	54 (0.270)	6 (0.040)	4/202	NT	13.6%	intergenic (‑52/+123)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	2052634 =	37 (0.260)					intergenic (‑162/+13)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2052560	51 (0.260)	12 (0.080)	8/202	NT	24.4%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2052596	37 (0.260)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2057943	113 (0.570)	12 (0.070)	4/244	NT	11.7%	intergenic (+27/‑116)	aroC/PP_1831	chorismate synthase/membrane protein
	?	NC_002947	= 2058017	81 (0.470)					intergenic (+101/‑42)	aroC/PP_1831	chorismate synthase/membrane protein
*	?	NC_002947	2059765 =	86 (0.440)	7 (0.040)	6/228	NT	8.8%	intergenic (+16/+112)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2059853 =	74 (0.450)					intergenic (+104/+24)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	= 2059788	80 (0.410)	14 (0.090)	7/228	NT	16.7%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2059828	74 (0.450)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	2073127 =	119 (0.600)	6 (0.040)	4/240	NT	5.7%	intergenic (+114/+113)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	2073200 =	95 (0.550)					intergenic (+187/+40)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
*	?	NC_002947	2101925 =	55 (0.280)	14 (0.090)	8/230	NT	22.3%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2102020 =	52 (0.320)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2101947	52 (0.260)	18 (0.110)	8/230	NT	27.4%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2101996	52 (0.320)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2179666 =	199 (1.010)	129 (0.660)	76/274	NT	53.1%	intergenic (+102/‑64)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein
	?	NC_002947	4459540 =	30 (0.150)					coding (212/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A
*	?	NC_002947	2179666 =	199 (1.010)	71 (0.360)	43/274	NT	38.4%	intergenic (+102/‑64)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein
	?	NC_002947	= 4459541	30 (0.150)					coding (213/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A
*	?	NC_002947	= 2181342	214 (1.090)	77 (0.390)	51/274	NT	38.8%	intergenic (+176/+92)	PP_1931/PP_5486	hypothetical protein/hypothetical protein
	?	NC_002947	4459540 =	30 (0.150)					coding (212/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A
*	?	NC_002947	= 2181342	214 (1.090)	125 (0.640)	77/274	NT	50.8%	intergenic (+176/+92)	PP_1931/PP_5486	hypothetical protein/hypothetical protein
	?	NC_002947	= 4459541	30 (0.150)					coding (213/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A
*	?	NC_002947	2238884 =	83 (0.420)	9 (0.050)	5/244	NT	11.7%	intergenic (+14/+114)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	2238975 =	63 (0.360)					intergenic (+105/+23)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	= 2238899	88 (0.450)	9 (0.050)	6/244	NT	11.3%	intergenic (+29/+99)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	= 2238958	63 (0.360)					intergenic (+88/+40)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	= 2260024	NA (NA)	14 (0.080)	4/260	NT	12.7%	intergenic (+114/‑278)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2260117	102 (0.520)					intergenic (+207/‑185)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
*	?	NC_002947	= 2260037	NA (NA)	8 (0.040)	4/268	NT	NA	intergenic (+127/‑265)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2260081	NA (NA)					intergenic (+171/‑221)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
*	?	NC_002947	2297740 =	130 (0.660)	10 (0.060)	7/228	NT	9.3%	intergenic (+21/+112)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2297825 =	87 (0.530)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	= 2303474	132 (0.670)	10 (0.060)	5/248	NT	8.2%	intergenic (‑153/‑178)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	= 2303531	104 (0.590)					intergenic (‑210/‑121)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	= 2305083	157 (0.800)	10 (0.050)	6/256	NT	6.3%	intergenic (‑203/+92)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	= 2305143	154 (0.840)					intergenic (‑263/+32)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
*	?	NC_002947	2474067 =	32 (0.160)	5 (0.040)	3/198	NT	13.7%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2474191 =	40 (0.280)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	= 2474080	32 (0.160)	6 (0.030)	6/262	NT	8.4%	intergenic (+19/+130)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2474278 =	100 (0.530)					coding (1783/1851 nt)	PP_2167	PhoD‑like phosphatase
*	?	NC_002947	= 2474105	31 (0.160)	15 (0.110)	5/198	NT	32.5%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 2474151	40 (0.280)					intergenic (+90/+59)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	2499874 =	163 (0.830)	9 (0.050)	6/254	NT	5.8%	intergenic (+10/‑191)	PP_2192/PP_2193	ECF family RNA polymerase sigma‑70 factor/transmembrane sensor protein/ferric siderophore receptor
	?	NC_002947	2499972 =	141 (0.780)					intergenic (+108/‑93)	PP_2192/PP_2193	ECF family RNA polymerase sigma‑70 factor/transmembrane sensor protein/ferric siderophore receptor
*	?	NC_002947	= 2665996	56 (0.280)	11 (0.070)	4/228	NT	17.6%	intergenic (+56/‑107)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	= 2666029	57 (0.350)					intergenic (+89/‑74)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
*	?	NC_002947	= 2796887	152 (0.770)	15 (0.080)	10/250	NT	9.3%	intergenic (+30/+82)	PP_2447/puuB	hypothetical protein/gamma‑glutamylputrescine oxidase
	?	NC_002947	= 2796938	155 (0.870)					intergenic (+81/+31)	PP_2447/puuB	hypothetical protein/gamma‑glutamylputrescine oxidase
*	?	NC_002947	2796889 =	152 (0.770)	17 (0.090)	9/272	NT	10.2%	intergenic (+32/+80)	PP_2447/puuB	hypothetical protein/gamma‑glutamylputrescine oxidase
	?	NC_002947	2796938 =	150 (0.770)					intergenic (+81/+31)	PP_2447/puuB	hypothetical protein/gamma‑glutamylputrescine oxidase
*	?	NC_002947	2959037 =	125 (0.630)	12 (0.070)	7/246	NT	9.2%	intergenic (+27/‑169)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
	?	NC_002947	2959124 =	126 (0.720)					intergenic (+114/‑82)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
*	?	NC_002947	2992849 =	172 (0.870)	9 (0.050)	5/262	NT	5.3%	coding (596/2169 nt)	vgrG‑I	type VI secretion system protein
	?	NC_002947	= 4613642	160 (0.860)					intergenic (+636/‑1471)	hcpC‑II/PP_4084	hemolysin‑coregulated protein/hypothetical protein
*	?	NC_002947	3321086 =	120 (0.610)	9 (0.050)	6/254	NT	8.0%	intergenic (‑85/+107)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator
	?	NC_002947	3321171 =	96 (0.530)					intergenic (‑170/+22)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator
*	?	NC_002947	3341082 =	80 (0.410)	7 (0.040)	7/232	NT	8.3%	intergenic (‑119/+124)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	3341170 =	88 (0.530)					intergenic (‑207/+36)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
*	?	NC_002947	= 3341103	83 (0.420)	5 (0.030)	4/232	NT	6.0%	intergenic (‑140/+103)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	= 3341147	88 (0.530)					intergenic (‑184/+59)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
*	?	NC_002947	= 3466245	124 (0.630)	14 (0.090)	7/228	NT	10.8%	coding (78/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
	?	NC_002947	= 3466284	128 (0.790)					coding (39/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
*	?	NC_002947	= 3492817	174 (0.880)	9 (0.050)	4/264	NT	5.1%	coding (539/2637 nt)	clpV	protein ClpV1
	?	NC_002947	= 3492850	170 (0.900)					coding (506/2637 nt)	clpV	protein ClpV1
*	?	NC_002947	3590062 =	152 (0.770)	13 (0.080)	6/236	NT	11.0%	intergenic (+18/‑57)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	3590130 =	80 (0.480)					coding (12/1272 nt)	benE‑II	benzoate transport protein
*	?	NC_002947	3717876 =	228 (1.160)	13 (0.070)	10/266	NT	5.7%	coding (378/441 nt)	paaI	hydroxyphenylacetyl‑CoA thioesterase
	?	NC_002947	3717910 =	207 (1.090)					coding (344/441 nt)	paaI	hydroxyphenylacetyl‑CoA thioesterase
*	?	NC_002947	3949879 =	67 (0.340)	16 (0.100)	8/220	NT	20.7%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3949964 =	69 (0.440)					coding (51/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3949906	65 (0.330)	8 (0.050)	6/220	NT	11.7%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3949935	69 (0.440)					coding (80/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 3953063	64 (0.320)	10 (0.060)	7/220	NT	14.9%	intergenic (‑61/+134)	PP_3486/PP_3487	cytochrome c/hypothetical protein
	?	NC_002947	= 3953123	63 (0.400)					intergenic (‑121/+74)	PP_3486/PP_3487	cytochrome c/hypothetical protein
*	?	NC_002947	3970841 =	45 (0.230)	16 (0.080)	6/268	NT	16.0%	coding (1003/1179 nt)	PP_3498	transposase
	?	NC_002947	3970932 =	124 (0.650)					coding (1094/1179 nt)	PP_3498	transposase
*	?	NC_002947	= 3970845	NA (NA)	12 (0.060)	7/262	NT	9.8%	coding (1007/1179 nt)	PP_3498	transposase
	?	NC_002947	3970908 =	117 (0.590)					coding (1070/1179 nt)	PP_3498	transposase
*	?	NC_002947	= 4024316	151 (0.770)	7 (0.070) +64 bp	6/148	NT	9.0%	intergenic (‑45/+623)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
	?	NC_002947	= 4909934	114 (0.580)					coding (58/198 nt)	PP_4317	hypothetical protein
*	?	NC_002947	= 4079840	166 (0.840)	13 (0.070)	8/262	NT	7.4%	intergenic (+31/+42)	PP_3588/sdaC	Bcr/CflA family multidrug resistance transporter/serine:H+ symport permease
	?	NC_002947	= 4079851	169 (0.900)					intergenic (+42/+31)	PP_3588/sdaC	Bcr/CflA family multidrug resistance transporter/serine:H+ symport permease
*	?	NC_002947	4096604 =	184 (0.930)	9 (0.050)	6/252	NT	5.3%	intergenic (+54/+81)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	4096673 =	155 (0.860)					intergenic (+123/+12)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
*	?	NC_002947	= 4133076	179 (0.910)	23 (0.130)	6/256	NT	11.1%	intergenic (+22/+90)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
	?	NC_002947	= 4133138	202 (1.110)					intergenic (+84/+28)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
*	?	NC_002947	4151990 =	70 (0.360)	18 (0.110)	9/240	NT	22.2%	intergenic (+23/‑374)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
	?	NC_002947	4152057 =	65 (0.380)					intergenic (+90/‑307)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
*	?	NC_002947	= 4152007	58 (0.290)	15 (0.090)	6/240	NT	20.6%	intergenic (+40/‑357)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
	?	NC_002947	= 4152038	65 (0.380)					intergenic (+71/‑326)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
*	?	NC_002947	4161035 =	92 (0.470)	18 (0.100)	13/250	NT	17.0%	intergenic (+17/‑192)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4161123 =	93 (0.520)					intergenic (+105/‑104)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4161064	93 (0.470)	19 (0.110)	7/244	NT	18.3%	intergenic (+46/‑163)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	= 4161092	88 (0.510)					intergenic (+74/‑135)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	= 4162818	202 (1.030)	11 (0.060)	9/262	NT	5.3%	coding (1205/1302 nt)	PP_3663	GGDEF domain‑containing protein
	?	NC_002947	= 4162841	198 (1.060)					coding (1182/1302 nt)	PP_3663	GGDEF domain‑containing protein
*	?	NC_002947	= 4268513	159 (0.810)	16 (0.090)	4/242	NT	9.8%	intergenic (‑89/+57)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	= 4268550	156 (0.900)					intergenic (‑126/+20)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
*	?	NC_002947	4444522 =	153 (0.780)	8 (0.040)	6/276	NT	5.0%	intergenic (‑26/+112)	nicP‑II/nicT	porin‑like protein/metabolite transport protein NicT
	?	NC_002947	4444570 =	151 (0.770)					intergenic (‑74/+64)	nicP‑II/nicT	porin‑like protein/metabolite transport protein NicT
*	?	NC_002947	= 4535558	95 (0.480)	9 (0.050)	4/252	NT	8.8%	intergenic (+34/‑140)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	= 4535597	100 (0.560)					intergenic (+73/‑101)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
*	?	NC_002947	4579766 =	158 (0.800)	16 (0.080)	9/266	NT	9.8%	intergenic (+9/+100)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
	?	NC_002947	4579851 =	143 (0.750)					intergenic (+94/+15)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
*	?	NC_002947	4585441 =	75 (0.380)	11 (0.070)	6/236	NT	13.9%	intergenic (‑48/+123)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	4585542 =	72 (0.430)					intergenic (‑149/+22)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	= 4585460	74 (0.380)	8 (0.050)	8/236	NT	10.6%	intergenic (‑67/+104)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4585521	72 (0.430)					intergenic (‑128/+43)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	4587985 =	104 (0.530)	21 (0.150)	17/200	NT	30.6%	intergenic (+102/+115)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4588089 =	20 (0.140)					intergenic (+206/+11)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4649525 =	26 (0.130)	26 (0.180)	11/198	NT	49.2%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4649633 =	35 (0.250)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4649563	26 (0.130)	13 (0.090)	9/198	NT	32.6%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4649593	35 (0.250)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4810141 =	0 (0.000)	76 (0.520)	36/206	NT	58.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5990913	106 (0.720)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4810146	0 (0.000)	90 (0.500)	32/252	NT	58.3%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5990743 =	129 (0.720)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4847095 =	120 (0.610)	5 (0.030)	4/244	NT	5.1%	intergenic (+14/‑123)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
	?	NC_002947	4847188 =	81 (0.470)					intergenic (+107/‑30)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
*	?	NC_002947	= 4854420	33 (0.170)	9 (0.070)	7/194	NT	18.9%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4854479	54 (0.390)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
*	?	NC_002947	4888103 =	108 (0.550)	6 (0.040)	6/218	NT	8.2%	intergenic (+15/+108)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
	?	NC_002947	4888190 =	49 (0.320)					intergenic (+102/+21)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
*	?	NC_002947	= 4891562	72 (0.370)	9 (0.060)	3/222	NT	11.4%	intergenic (+41/‑112)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4891599	82 (0.520)					intergenic (+78/‑75)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	4895520 =	86 (0.440)	5 (0.030)	4/222	NT	6.9%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4895599 =	65 (0.410)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	= 4895546	84 (0.430)	10 (0.060)	5/222	NT	13.1%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4895571	65 (0.410)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	4898345 =	101 (0.510)	13 (0.080)	9/234	NT	13.9%	intergenic (+11/‑197)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	4898434 =	75 (0.450)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4898365	93 (0.470)	21 (0.130)	14/234	NT	21.4%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4898412	75 (0.450)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	5114529 =	176 (0.890)	9 (0.050)	4/232	NT	6.7%	intergenic (‑148/+118)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
	?	NC_002947	5114634 =	102 (0.620)					intergenic (‑253/+13)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
*	?	NC_002947	5164540 =	83 (0.420)	15 (0.090)	7/224	NT	21.4%	intergenic (+93/+108)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5164624 =	43 (0.270)					intergenic (+177/+24)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5203549 =	28 (0.140)	17 (0.120)	8/202	NT	47.6%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5203644 =	17 (0.120)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	= 5203585	26 (0.130)	19 (0.130)	10/202	NT	51.3%	intergenic (‑101/‑79)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	= 5203606	17 (0.120)					intergenic (‑122/‑58)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	5212189 =	143 (0.730)	14 (0.080)	7/244	NT	10.9%	intergenic (‑85/+93)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	5212280 =	102 (0.590)					intergenic (‑176/+2)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	5259827 =	126 (0.640)	13 (0.070)	9/248	NT	11.1%	intergenic (‑56/+88)	PP_4634/PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
	?	NC_002947	5259898 =	95 (0.540)					intergenic (‑127/+17)	PP_4634/PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
*	?	NC_002947	5290364 =	61 (0.310)	6 (0.040)	3/216	NT	10.5%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5290458 =	55 (0.360)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5290393	58 (0.290)	10 (0.060)	6/216	NT	16.6%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5290427	55 (0.360)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5335151	196 (1.000)	19 (0.100)	7/264	NT	11.4%	intergenic (+13/‑230)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	= 5335237	108 (0.570)					intergenic (+99/‑144)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
*	?	NC_002947	5335165 =	183 (0.930)	15 (0.090)	11/246	NT	10.0%	intergenic (+27/‑216)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	5335225 =	106 (0.600)					intergenic (+87/‑156)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
*	?	NC_002947	5384368 =	33 (0.170)	7 (0.050)	4/206	NT	20.1%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5384466 =	31 (0.210)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	= 5384402	24 (0.120)	8 (0.050)	7/206	NT	24.6%	intergenic (+52/+81)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	= 5384430	31 (0.210)					intergenic (+80/+53)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	5515212 =	99 (0.500)	7 (0.040)	4/224	NT	7.4%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5515320 =	94 (0.590)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	= 5515237	102 (0.520)	8 (0.050)	6/224	NT	8.3%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5515293	94 (0.590)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	5521795 =	173 (0.880)	13 (0.070)	10/256	NT	6.8%	intergenic (‑96/‑130)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5521880 =	195 (1.070)					intergenic (‑181/‑45)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	= 5562719	159 (0.810)	11 (0.060)	10/250	NT	7.0%	intergenic (‑250/+52)	hisZ/hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	= 5562730	148 (0.830)					intergenic (‑261/+41)	hisZ/hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase
*	?	NC_002947	5573380 =	141 (0.720)	10 (0.060)	3/248	NT	7.4%	intergenic (+29/+112)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
	?	NC_002947	5573465 =	124 (0.700)					intergenic (+114/+27)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
*	?	NC_002947	= 5573393	133 (0.680)	7 (0.040)	6/248	NT	5.4%	intergenic (+42/+99)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
	?	NC_002947	= 5573450	124 (0.700)					intergenic (+99/+42)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
*	?	NC_002947	5596065 =	74 (0.380)	14 (0.090)	7/220	NT	18.9%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5596158 =	61 (0.390)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5596092	72 (0.370)	18 (0.110)	8/220	NT	23.3%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5596129	61 (0.390)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 5671399	173 (0.880)	10 (0.060)	9/248	NT	5.8%	intergenic (+27/‑98)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
	?	NC_002947	= 5671420	168 (0.950)					intergenic (+48/‑77)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
*	?	NC_002947	5673588 =	109 (0.550)	14 (0.090)	4/228	NT	13.6%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5673673 =	88 (0.540)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	= 5673611	95 (0.480)	7 (0.040)	5/228	NT	7.8%	intergenic (+57/‑113)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	= 5673648	88 (0.540)					intergenic (+94/‑76)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	5683319 =	116 (0.590)	8 (0.050)	6/230	NT	9.6%	intergenic (‑63/+145)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
	?	NC_002947	5683434 =	54 (0.330)					intergenic (‑178/+30)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
*	?	NC_002947	= 5694540	178 (0.900)	17 (0.090)	10/254	NT	9.1%	intergenic (+31/‑139)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
	?	NC_002947	= 5694602	176 (0.970)					intergenic (+93/‑77)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
*	?	NC_002947	= 5700721	78 (0.400)	14 (0.080)	9/242	NT	15.5%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5700770	84 (0.490)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	5736006 =	132 (0.670)	12 (0.060)	6/274	NT	8.7%	intergenic (‑54/+103)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	5736089 =	121 (0.620)					intergenic (‑137/+20)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
*	?	NC_002947	5745314 =	144 (0.730)	10 (0.060)	8/250	NT	7.7%	intergenic (‑169/+78)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	5745368 =	111 (0.620)					intergenic (‑223/+24)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
*	?	NC_002947	5761382 =	57 (0.290)	16 (0.110)	9/212	NT	28.1%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5761474 =	38 (0.250)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5761413	57 (0.290)	17 (0.110)	4/212	NT	29.4%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5761441	38 (0.250)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5788473	105 (0.530)	5 (0.030)	4/228	NT	5.1%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5788510	100 (0.610)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	5818832 =	73 (0.370)	12 (0.070)	10/240	NT	14.3%	intergenic (+40/+89)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5818895 =	80 (0.470)					intergenic (+103/+26)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	= 5818849	74 (0.380)	13 (0.080)	8/240	NT	15.3%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5818876	80 (0.470)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5829793 =	185 (0.940)	12 (0.070)	8/254	NT	6.5%	intergenic (+17/+182)	mtgA/rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
	?	NC_002947	5829901 =	175 (0.970)					intergenic (+125/+74)	mtgA/rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
*	?	NC_002947	5872239 =	65 (0.330)	8 (0.050)	6/218	NT	13.5%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5872332 =	51 (0.330)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	= 5872267	63 (0.320)	10 (0.060)	7/218	NT	16.6%	intergenic (+50/+84)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5872302	51 (0.330)					intergenic (+85/+49)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	5876526 =	218 (1.110)	11 (0.060)	8/254	NT	5.8%	intergenic (‑40/+108)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	5876608 =	154 (0.850)					intergenic (‑122/+26)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	5878962 =	149 (0.760)	9 (0.060)	8/228	NT	6.6%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5879044 =	132 (0.810)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5905749 =	139 (0.710)	23 (0.130)	10/244	NT	17.2%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5905809 =	99 (0.570)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	= 5910069	167 (0.850)	10 (0.060)	8/254	NT	5.8%	intergenic (‑125/+32)	spuE/spuD	spermidine/putrescine ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter substrate‑binding protein
	?	NC_002947	= 5910076	169 (0.930)					intergenic (‑132/+25)	spuE/spuD	spermidine/putrescine ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter substrate‑binding protein
*	?	NC_002947	5916135 =	58 (0.290)	12 (0.080)	8/220	NT	16.0%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5916231 =	80 (0.510)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5916162	53 (0.270)	18 (0.110)	14/220	NT	22.7%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5916202	80 (0.510)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5945600	91 (0.460)	9 (0.050)	8/232	NT	8.9%	intergenic (+30/+55)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
	?	NC_002947	= 5945621	108 (0.650)					intergenic (+51/+34)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
*	?	NC_002947	= 5990749	129 (0.660)	18 (0.100)	14/260	NT	12.0%	intergenic (+65/‑481)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
	?	NC_002947	5990941 =	143 (0.770)					intergenic (+257/‑289)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	6002881 =	56 (0.280)	12 (0.080)	8/216	NT	19.2%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6002975 =	57 (0.370)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	= 6002910	58 (0.290)	12 (0.080)	6/216	NT	19.0%	intergenic (+39/+70)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	= 6002944	57 (0.370)					intergenic (+73/+36)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	6005183 =	171 (0.870)	15 (0.080)	10/262	NT	8.3%	coding (732/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase
	?	NC_002947	6005228 =	171 (0.910)					coding (687/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase
*	?	NC_002947	6021226 =	105 (0.530)	6 (0.040)	4/230	NT	5.8%	intergenic (‑49/+96)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	6021302 =	107 (0.650)					intergenic (‑125/+20)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6021248	104 (0.530)	9 (0.050)	8/230	NT	8.5%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6021278	107 (0.650)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6062422	121 (0.610)	6 (0.030)	3/248	NT	5.3%	intergenic (+80/+101)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	= 6062481	106 (0.600)					intergenic (+139/+42)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	6062424 =	124 (0.630)	14 (0.080)	7/256	NT	11.3%	intergenic (+82/+99)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6062481 =	104 (0.570)					intergenic (+139/+42)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6079822	128 (0.650)	12 (0.070)	7/228	NT	9.3%	intergenic (‑146/+92)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
	?	NC_002947	= 6079874	129 (0.790)					intergenic (‑198/+40)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter