mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 3,823,966 | A→C | F395V (TTC→GTC) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,824,695 | G→C | L152V (CTG→GTG) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,824,717 | C→T | M144I (ATG→ATA) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,827,929 | C→A | V28F (GTC→TTC) | ptxS ← | 2‑ketogluconate utilization repressor |
| JC | 4,717,316 | (CTGAGCCTGGCC)1→2 | coding (579/1932 nt) | PP_4173 → | two‑component system sensor histidine kinase/response regulator |
| RA | 4,743,195 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,197 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,199 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,202 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,205 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,207 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,221 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,223 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,226 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 5,367,931 | G→A | P199S (CCC→TCC) | ftsH ← | integral membrane ATP‑dependent zinc metallopeptidase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6183852 | 6183858 | 7 | 414 [0] | [0] NA | atpI/– | ATP synthase protein I/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1 = | 0 (0.000) | 414 (1.070) | 163/294 | 0.3 | 100% | intergenic (–/+146) | –/parB | –/chromosome‑partitioning protein |
| ? | NC_002947 | = 6183851 | 0 (0.000) | intergenic (‑3/–) | atpI/– | ATP synthase protein I/– | |||||
| * | ? | NC_002947 | 744926 = | NA (NA) | 347 (0.910) | 151/290 | 0.6 | 93.4% | intergenic (‑588/+43) | PP_0636/PP_0637 | cold shock DNA‑binding domain‑containing protein/transposase |
| ? | NC_002947 | 2556010 = | 25 (0.060) | coding (26/1881 nt) | PP_2240 | ABC transporter permease/ATP‑binding protein | |||||
| * | ? | NC_002947 | = 746963 | NA (NA) | 383 (1.000) | 159/292 | 0.4 | 92.1% | intergenic (‑87/‑707) | PP_0638/PP_5448 | transposase/hypothetical protein |
| ? | NC_002947 | = 2556020 | 33 (0.090) | coding (36/1881 nt) | PP_2240 | ABC transporter permease/ATP‑binding protein | |||||
| * | ? | NC_002947 | 2179666 = | 328 (0.850) | 351 (0.910) | 158/292 | 0.4 | 67.9% | intergenic (+102/‑64) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein |
| ? | NC_002947 | 4459540 = | 6 (0.020) | coding (212/696 nt) | pcaI | 3‑oxoadipate CoA‑transferase subunit A | |||||
| * | ? | NC_002947 | = 2181342 | 469 (1.210) | 490 (1.280) | 180/292 | 0.0 | 67.7% | intergenic (+176/+92) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 4459541 | 2 (0.010) | coding (213/696 nt) | pcaI | 3‑oxoadipate CoA‑transferase subunit A | |||||