breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 1,842,929 G→T P636Q (CCG→CAG)  gacS ← sensor protein GacS
RA 2,246,373 C→G intergenic (+5/‑47) PP_1980 → / → dusC hypothetical protein/tRNA‑dihydrouridine synthase DusC
MC JC 3,823,860 Δ9 bp coding (1281‑1289/1293 nt) kguT ← 2‑ketogluconate transporter, putative
RA 3,824,695 G→C L152V (CTG→GTG)  kguT ← 2‑ketogluconate transporter, putative
RA 3,827,923 G→T R30S (CGT→AGT)  ptxS ← 2‑ketogluconate utilization repressor
RA 4,160,437 A→C S161R (AGC→CGC)  PP_3661 → membrane protein
RA 4,743,195 +C intergenic (+464/+288) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,743,197 A→G intergenic (+466/+286) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,743,199 C→T intergenic (+468/+284) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,743,202 C→T intergenic (+471/+281) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,743,205 C→G intergenic (+474/+278) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,743,207 2 bp→CT intergenic (+476/+275) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,743,221 C→T intergenic (+490/+262) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,743,223 A→C intergenic (+492/+260) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,743,226 2 bp→GC intergenic (+495/+256) gltA → / ← yeiW citrate synthase/putative oxidoreductase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 21743 21771 29 3 [1] [0] 2 PP_0016 hypothetical protein
* * ÷ NC_002947 26636 26674 39 3 [1] [1] 2 PP_0021 hypothetical protein
* * ÷ NC_002947 36313 36359 47 2 [1] [1] 3 PP_0033 undecaprenyl‑glycosyl transferase
* * ÷ NC_002947 46477 46610 134 3 [1] [1] 3 czcA‑I cation efflux system protein
* * ÷ NC_002947 48853 48926 74 2 [1] [1] 2 czcA‑I cation efflux system protein
* * ÷ NC_002947 49784 49855 72 3 [1] [0] 2 czcB‑I cobalt‑zinc‑cadmium resistance protein
* * ÷ NC_002947 97567 97608 42 2 [1] [1] 2 [PP_0090]–[PP_0091] [PP_0090],[PP_0091]
* * ÷ NC_002947 170746 170850 105 2 [1] [0] 2 [PP_0159] [PP_0159]
* * ÷ NC_002947 171389–172965 176283–172970 6–4895 2 [1] [1] 2 [PP_16SA]–[PP_5SA] [PP_16SA],PP_23SA,[PP_5SA]
* * ÷ NC_002947 176649–178395 181697–178400 6–5049 4 [1] [1] 2 PP_16SB–[PP_r01] PP_16SB,PP_23SB,[PP_r01]
* * ÷ NC_002947 182875 182944 70 2 [0] [0] 2 PP_0160 ferrioxamine receptor
* * ÷ NC_002947 202048 202103 56 3 [1] [0] 2 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 220561 220629 69 2 [1] [0] 2 PP_0168/PP_5431 putative surface adhesion protein/hypothetical protein
* * ÷ NC_002947 235363 235382 20 2 [1] [1] 2 PP_0183/argH glutathione S‑transferase/argininosuccinate lyase
* * ÷ NC_002947 284562 284603 42 2 [1] [0] 2 betT‑II/atsK choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
* * ÷ NC_002947 336240 336274 35 5 [0] [1] 2 PP_0278/PP_0279 hypothetical protein/hypothetical protein
* * ÷ NC_002947 353091 353205 115 2 [1] [1] 3 [cbcV] [cbcV]
* * ÷ NC_002947 499223 499254 32 2 [1] [1] 2 uhpA/PP_0411 two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
* * ÷ NC_002947 524157 524183 27 2 [1] [0] 2 tyrS/PP_16SC tyrosine‑‑tRNA ligase/16S ribosomal RNA
* * ÷ NC_002947 534024 534072 49 2 [1] [1] 2 [PP_t04] [PP_t04]
* * ÷ NC_002947 545209 545287 79 2 [1] [1] 3 rpoC DNA‑directed RNA polymerase subunit beta'
* * ÷ NC_002947 562738 562763 26 2 [0] [0] 3 rpsD 30S ribosomal protein S4
* * ÷ NC_002947 563583 563603 21 2 [0] [1] 2 rpoA DNA‑directed RNA polymerase subunit alpha
* * ÷ NC_002947 668082 668084 3 2 [0] [0] 2 yfhM/PP_0571 lipoprotein/membrane protein
* * ÷ NC_002947 681262 681327 66 2 [1] [1] 2 [PP_0583] [PP_0583]
* * ÷ NC_002947 718460 718483 24 2 [1] [0] 2 thiO/PP_0613 FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein
* * ÷ NC_002947 796853 796885 33 2 [1] [1] 3 PP_0681/PP_0682 hypothetical protein/inner membrane protein
* * ÷ NC_002947 951537 951568 32 3 [0] [1] 2 cyoB cytochrome bo terminal oxidase subunit I
* * ÷ NC_002947 1113645 1113901 257 4 [1] [1] 2 [hupN]–[rlmF] [hupN],[rlmF]
* * ÷ NC_002947 1114887 1114905 19 2 [1] [0] 2 rlmF/valS ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
* * ÷ NC_002947 1124539 1124604 66 3 [0] [1] 2 gcvT‑I aminomethyltransferase
* * ÷ NC_002947 1126622 1126632 11 2 [1] [1] 2 tdcG‑II/gcvP‑I L‑serine dehydratase/glycine dehydrogenase
* * ÷ NC_002947 1156371 1156390 20 2 [0] [1] 2 PP_1013/yihS sensor histidine kinase/aldose‑ketose isomerase
* * ÷ NC_002947 1210805 1210832 28 2 [1] [1] 2 [ytnA] [ytnA]
* * ÷ NC_002947 1383234 1383264 31 2 [1] [0] 3 PP_1204 lipoprotein
* * ÷ NC_002947 1403570 1403606 37 2 [1] [0] 2 PP_1227/PP_1228 membrane protein/methyl‑accepting chemotaxis transducer
* * ÷ NC_002947 1487050 1487078 29 3 [1] [0] 4 yhdZ/degS amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
* * ÷ NC_002947 1592641 1592676 36 2 [1] [1] 2 PP_1397 hypothetical protein
* * ÷ NC_002947 1615691 1615762 72 2 [0] [1] 3 PP_1415 membrane protein
* * ÷ NC_002947 1639597 1639657 61 2 [1] [1] 2 czcR‑III/PP_1439 response regulator/hypothetical protein
* * ÷ NC_002947 1704667 1704695 29 2 [1] [1] 3 [PP_1499] [PP_1499]
* * ÷ NC_002947 1712108 1712150 43 3 [1] [1] 2 ppc/adk phosphoenolpyruvate carboxylase/adenylate kinase
* * ÷ NC_002947 1765900 1766053 154 2 [1] [1] 3 [PP_1576]–[PP_1577] [PP_1576],[PP_1577]
* * ÷ NC_002947 1780119 1780144 26 8 [1] [1] 2 PP_1587/dapC NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
* * ÷ NC_002947 1802061 1802078 18 2 [1] [1] 3 dnaEA DNA polymerase III subunit alpha
* * ÷ NC_002947 1840122 1840151 30 4 [0] [1] 2 [PP_1647] [PP_1647]
* * ÷ NC_002947 1921570 1921617 48 2 [1] [1] 2 PP_1720/PP_1721 alcohol dehydrogenase/phosphoserine phosphatase
* * ÷ NC_002947 1930426 1930509 84 2 [1] [1] 2 [apeB] [apeB]
* * ÷ NC_002947 1970835 1970887 53 2 [0] [1] 2 mtnA/PP_mr25 methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
* * ÷ NC_002947 1985988 1986079 92 2 [1] [1] 2 cpsG phosphomannomutase
* * ÷ NC_002947 1995068 1995094 27 2 [1] [1] 2 PP_1781/PP_mr26 acyltransferase/C4 ncRNA
* * ÷ NC_002947 1996798 1996865 68 4 [1] [0] 2 rfbA dTDP‑glucose pyrophosphorylase
* * ÷ NC_002947 1997634 1997657 24 2 [1] [1] 2 rfbD dTDP‑4‑dehydrorhamnose reductase
* * ÷ NC_002947 1999043 1999138 96 2 [1] [0] 2 rffG dTDP‑glucose 4,6‑dehydratase
* * ÷ NC_002947 2000592 2000683 92 2 [1] [1] 3 PP_1786 glycosyl transferase
* * ÷ NC_002947 2004873 2004995 123 2 [1] [1] 2 PP_1788 hypothetical protein
* * ÷ NC_002947 2005967 2006013 47 4 [0] [1] 2 PP_1788/PP_1789 hypothetical protein/haloacid dehalogenase‑like family hydrolase
* * ÷ NC_002947 2006855 2006947 93 2 [1] [0] 2 PP_1790 acylneuraminate cytidylyltransferase
* * ÷ NC_002947 2006995 2007107 113 2 [0] [1] 2 PP_1790 acylneuraminate cytidylyltransferase
* * ÷ NC_002947 2011839 2011876 38 2 [1] [1] 2 PP_1793 group 2 family glycosyl transferase
* * ÷ NC_002947 2014108 2014208 101 3 [1] [1] 2 PP_1794 hypothetical protein
* * ÷ NC_002947 2065174 2065179 6 2 [0] [1] 6 PP_1838/PP_1839 membrane protein/hypothetical protein
* * ÷ NC_002947 2105298 2105424 127 2 [1] [1] 2 [PP_1879] [PP_1879]
* * ÷ NC_002947 2129287 2129301 15 2 [0] [1] 2 PP_1887 hypothetical protein
* * ÷ NC_002947 2170353 2170359 7 2 [1] [0] 2 PP_1921/PP_1922 hypothetical protein/hypothetical protein
* * ÷ NC_002947 2182161 2182213 53 2 [0] [1] 2 PP_1932 hypothetical protein
* * ÷ NC_002947 2193198 2193212 15 2 [1] [1] 2 PP_1937 helicase
* * ÷ NC_002947 2193924 2194042 119 2 [1] [1] 2 PP_1937 helicase
* * ÷ NC_002947 2211732 2211839 108 2 [1] [1] 2 PP_1953 short‑chain dehydrogenase/reductase family oxidoreductase
* * ÷ NC_002947 2214056 2214200 145 3 [1] [1] 2 PP_1955 cytochrome P450 family protein
* * ÷ NC_002947 2243193 2243297 105 2 [0] [1] 3 [gltX] [gltX]
* * ÷ NC_002947 2297777 2297840 64 2 [1] [1] 2 PP_5496/PP_2023 hypothetical protein/glutathione S‑transferase family protein
* * ÷ NC_002947 2402499 2402512 14 3 [0] [1] 2 evgA/dgt two‑component system response regulator/deoxyguanosinetriphosphate triphosphohydrolase‑like protein
* * ÷ NC_002947 2458831 2458849 19 2 [1] [1] 3 gapB/PP_2150 glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
* * ÷ NC_002947 2476115 2476118 4 4 [0] [0] 7 PP_2167/tal PhoD‑like phosphatase/transaldolase
* * ÷ NC_002947 2480344 2480423 80 2 [1] [1] 2 PP_2172 hypothetical protein
* * ÷ NC_002947 2593134 2593321 188 2 [1] [1] 2 PP_2269 N‑acetylmuramoyl‑L‑alanine amidase
* * ÷ NC_002947 2593672 2593755 84 2 [1] [1] 2 PP_2269/PP_2270 N‑acetylmuramoyl‑L‑alanine amidase/DNA primase/helicase
* * ÷ NC_002947 2593969 2594105 137 2 [1] [1] 2 PP_2270 DNA primase/helicase
* * ÷ NC_002947 2595572 2595617 46 2 [1] [1] 2 PP_5509 hypothetical protein
* * ÷ NC_002947 2598931 2599060 130 2 [1] [1] 2 PP_2273 DNA polymerase I
* * ÷ NC_002947 2599676 2599706 31 2 [1] [1] 3 PP_2276 exonuclease
* * ÷ NC_002947 2602517 2602570 54 2 [1] [1] 2 PP_2279 head‑to‑tail joining protein
* * ÷ NC_002947 2602997 2603000 4 3 [0] [0] 3 PP_2279 head‑to‑tail joining protein
* * ÷ NC_002947 2603160 2603263 104 3 [1] [1] 2 PP_2279 head‑to‑tail joining protein
* * ÷ NC_002947 2613888 2613977 90 2 [1] [0] 2 PP_2287 internal core protein
* * ÷ NC_002947 2666008 2666015 8 2 [1] [0] 2 prpC/acnA‑II methylcitrate synthase/aconitate hydratase
* * ÷ NC_002947 2669985 2670039 55 2 [1] [1] 2 prpF/prpD aconitate isomerase/2‑methylcitrate dehydratase
* * ÷ NC_002947 3055159 3055221 63 2 [1] [0] 2 [PP_2664]–[agmR] [PP_2664],[agmR]
* * ÷ NC_002947 3112867 3112941 75 2 [1] [1] 3 [pfpI] [pfpI]
* * ÷ NC_002947 3351244 3351352 109 2 [1] [1] 2 PP_2944 sensor histidine kinase
* * ÷ NC_002947 3370272 3370442 171 2 [1] [1] 2 PP_2964 transposase
* * ÷ NC_002947 3374703 3374817 115 2 [1] [1] 2 [PP_2971] [PP_2971]
* * ÷ NC_002947 3377063 3377177 115 2 [1] [1] 3 PP_2974 sulfatase
* * ÷ NC_002947 3415179 3415280 102 3 [1] [1] 2 PP_3026 recombinase
* * ÷ NC_002947 3431917 3431921 5 2 [0] [0] 4 PP_3045 ATP‑dependent protease ClpP
* * ÷ NC_002947 3468785 3468819 35 3 [0] [1] 2 [PP_3081] [PP_3081]
* * ÷ NC_002947 3732349 3732393 45 2 [0] [1] 3 PP_3297 hypothetical protein
* * ÷ NC_002947 3767489 3767515 27 2 [1] [1] 2 PP_3328 ring‑cleaving dioxygenase
* * ÷ NC_002947 3778322 3778374 53 2 [1] [1] 2 PP_3338/PP_3339 cytochrome bd‑type quinol oxidase/hypothetical protein
* * ÷ NC_002947 3847675 3847708 34 2 [1] [1] 2 [PP_3395] [PP_3395]
* * ÷ NC_002947 4152005 4152056 52 2 [1] [1] 2 PP_3654/PP_3655 leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
* * ÷ NC_002947 4172122 4172174 53 2 [1] [1] 2 katG/PP_3669 catalase‑peroxidase/LysR family transcriptional regulator
* * ÷ NC_002947 4178472 4178546 75 3 [0] [1] 3 PP_3676 hypothetical protein
* * ÷ NC_002947 4201982 4202105 124 2 [1] [1] 2 PP_3690 hypothetical protein
* * ÷ NC_002947 4204515 4204551 37 2 [0] [1] 2 PP_3691 DNA helicase‑related protein
* * ÷ NC_002947 4204842 4205227 386 2 [1] [1] 2 PP_3691 DNA helicase‑related protein
* * ÷ NC_002947 4206529 4206613 85 2 [1] [1] 2 PP_3691 DNA helicase‑related protein
* * ÷ NC_002947 4210583 4210669 87 2 [1] [1] 3 PP_3692 hypothetical protein
* * ÷ NC_002947 4210744 4210885 142 2 [0] [1] 2 PP_3692 hypothetical protein
* * ÷ NC_002947 4211053 4211232 180 2 [1] [1] 2 PP_3692 hypothetical protein
* * ÷ NC_002947 4213307 4213427 121 2 [1] [1] 2 PP_3693 transcriptional regulator MvaT
* * ÷ NC_002947 4313403 4313473 71 2 [1] [1] 2 PP_3784 hypothetical protein
* * ÷ NC_002947 4321255 4321443 189 5 [1] [1] 2 PP_3790 diaminopimelate epimerase
* * ÷ NC_002947 4323592 4323610 19 2 [0] [0] 2 PP_5629 protease/amidase
* * ÷ NC_002947 4342019 4342090 72 3 [1] [1] 3 ribAB‑II/PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
* * ÷ NC_002947 4346235 4346307 73 2 [1] [1] 2 [PP_3817] [PP_3817]
* * ÷ NC_002947 4355127 4355164 38 2 [1] [0] 6 yrpB 2‑nitropropane dioxygenase
* * ÷ NC_002947 4373561 4373738 178 3 [0] [1] 4 PP_5636/PP_3849 hypothetical protein/hemolysin‑type calcium‑binding protein
* * ÷ NC_002947 4531983 4532007 25 2 [1] [1] 2 PP_4018/topB acetyltransferase/DNA topoisomerase III
* * ÷ NC_002947 4541033 4541101 69 3 [1] [1] 2 PP_4027 hypothetical protein
* * ÷ NC_002947 4649588 4649636 49 2 [1] [1] 2 fusB/PP_4112 elongation factor G 2/sulfate transporter
* * ÷ NC_002947 4677278 4677343 66 2 [1] [1] 2 PP_4137/chrR outer membrane siderophore receptor/chromate reductase
* * ÷ NC_002947 4742755 4742816 62 3 [1] [1] 3 gltA/yeiW citrate synthase/putative oxidoreductase
* * ÷ NC_002947 4798553 4798602 50 2 [0] [1] 2 pvdH/PP_4224 diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
* * ÷ NC_002947 4810147 4810175 29 56 [0] [0] 20 PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
* * ÷ NC_002947 4844852 4844868 17 2 [1] [0] 2 ccoP‑II/PP_4259 cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
* * ÷ NC_002947 4847111 4847137 27 2 [1] [1] 3 PP_4260/PP_4261 hypothetical protein/cation‑transporting P‑type ATPase
* * ÷ NC_002947 4891550 4891614 65 2 [1] [0] 2 hyi/glxR hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
* * ÷ NC_002947 4939839 4939870 32 2 [1] [0] 2 ddlA D‑alanine‑‑D‑alanine ligase A
* * ÷ NC_002947 4952924 4952960 37 2 [1] [1] 2 fliL/fliK flagellar protein FliL/flagellar hook‑length control protein FliK
* * ÷ NC_002947 5007314 5007331 18 3 [1] [0] 2 PP_4410 hypothetical protein
* * ÷ NC_002947 5027533 5027599 67 2 [1] [1] 2 [PP_4429] [PP_4429]
* * ÷ NC_002947 5032696 5032736 41 7 [1] [0] 2 PP_4433/dadA‑I amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
* * ÷ NC_002947 5032833 5032874 42 2 [0] [1] 2 PP_4433/dadA‑I amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
* * ÷ NC_002947 5033007 5033030 24 2 [1] [1] 2 PP_4433/dadA‑I amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
* * ÷ NC_002947 5033817 5033955 139 2 [1] [1] 2 dadA‑I D‑amino acid dehydrogenase small subunit
* * ÷ NC_002947 5040959 5040989 31 2 [1] [1] 2 PP_4445 transposase
* * ÷ NC_002947 5047964 5047996 33 2 [1] [0] 2 PP_5682/PP_4450 hypothetical protein/phosphoglycerate mutase family protein
* * ÷ NC_002947 5058286 5058388 103 2 [1] [0] 2 [gsiC] [gsiC]
* * ÷ NC_002947 5058578 5058595 18 2 [0] [1] 4 ooxA opine oxidase subunit A
* * ÷ NC_002947 5061451 5061502 52 2 [1] [1] 2 PP_4458 opine ABC transporter substrate‑binding protein
* * ÷ NC_002947 5164559 5164570 12 4 [0] [0] 3 PP_4544/PP_4545 hypothetical protein/beta‑ketodecanoyl‑ACP synthase
* * ÷ NC_002947 5194715 5194780 66 2 [1] [1] 5 PP_4572/PP_4573 hypothetical protein/AAA family ATPase
* * ÷ NC_002947 5201602 5201663 62 3 [0] [0] 4 PP_4579/PP_4580 LysR family transcriptional regulator/hypothetical protein
* * ÷ NC_002947 5258787 5258863 77 2 [1] [1] 2 [PP_5703]–[PP_4634] [PP_5703],[PP_4634]
* * ÷ NC_002947 5346362 5346456 95 2 [1] [1] 3 [pgi‑II] [pgi‑II]
* * ÷ NC_002947 5398073 5398201 129 2 [0] [1] 2 hsdM type I restriction modification system methylase
* * ÷ NC_002947 5487107 5487128 22 3 [0] [1] 2 purH/purD bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
* * ÷ NC_002947 5538995 5539054 60 2 [1] [1] 3 nadE/PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin
* * ÷ NC_002947 5540540 5540554 15 2 [1] [1] 2 PP_4871/PP_4872 lysine decarboxylase family protein/hypothetical protein
* * ÷ NC_002947 5654939 5654945 7 4 [0] [1] 4 PP_4961/PP_4962 lipoprotein/hypothetical protein
* * ÷ NC_002947 5706518 5706525 8 3 [0] [1] 2 PP_5006/PP_5007 TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
* * ÷ NC_002947 5753678 5753776 99 2 [1] [1] 2 thiI/glnA tRNA sulfurtransferase/glutamine synthetase
* * ÷ NC_002947 5761402 5761415 14 2 [1] [1] 2 trmL/secB tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
* * ÷ NC_002947 5905103 5905171 69 2 [1] [0] 2 PP_5175/PP_5176 HlyD family secretion protein/hypothetical protein
* * ÷ NC_002947 5945612 5945620 9 2 [1] [1] 3 PP_5210/PP_5211 alcohol dehydrogenase/ChaC‑related protein
* * ÷ NC_002947 6008553 6008563 11 5 [0] [0] 2 ydcJ/PP_5261 metalloprotein/LysR family transcriptional regulator
* * ÷ NC_002947 6082957 6083002 46 2 [1] [1] 2 [PP_5333] [PP_5333]
* * ÷ NC_002947 6129133 6129149 17 2 [1] [0] 2 PP_5375 LysR family transcriptional regulator
* * ÷ NC_002947 6129863 6130101 239 2 [1] [1] 2 PP_5375/PP_5376 LysR family transcriptional regulator/hypothetical protein
* * ÷ NC_002947 6130103 6130241 139 2 [1] [1] 2 PP_5375/PP_5376 LysR family transcriptional regulator/hypothetical protein
* * ÷ NC_002947 6169910 6170253 344 3 [1] [1] 2 PP_5407 TnsD‑like transposition protein
* * ÷ NC_002947 6179349 6179442 94 2 [1] [1] 2 atpG ATP synthase subunit gamma
* * ÷ NC_002947 6183852 6183858 7 5 [0] [0] NA atpI/– ATP synthase protein I/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1 =0 (0.000)5 (0.230) 4/264 1.1 100% intergenic (–/+146) –/parB –/chromosome‑partitioning protein
?NC_002947 = 6183851 0 (0.000)intergenic (‑3/–) atpI/– ATP synthase protein I/–
* ? NC_002947 = 65278631 (1.400)16 (0.990) 5/194 0.7 58.5% coding (1960/1962 nt) ctpL methyl‑accepting chemotaxis protein CtpL
?NC_002947 4810176 = 0 (0.000)intergenic (‑318/‑237) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
* ? NC_002947 2474067 =5 (0.230)17 (1.100) 8/186 0.4 83.9% intergenic (+6/+143) PP_2166/PP_2167 anti‑anti‑sigma factor/PhoD‑like phosphatase
?NC_002947 2474191 = 3 (0.190)intergenic (+130/+19) PP_2166/PP_2167 anti‑anti‑sigma factor/PhoD‑like phosphatase
* ? NC_002947 = 24741055 (0.230)3 (0.190) 3/186 1.0 48.0% intergenic (+44/+105) PP_2166/PP_2167 anti‑anti‑sigma factor/PhoD‑like phosphatase
?NC_002947 = 2474151 3 (0.190)intergenic (+90/+59) PP_2166/PP_2167 anti‑anti‑sigma factor/PhoD‑like phosphatase
* ? NC_002947 = 48101460 (0.000)46 (2.290) 10/240 0.4 46.0% intergenic (‑288/‑267) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 5990743 = 108 (5.380)intergenic (+59/‑487) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? NC_002947 5454984 =NA (NA)11 (0.510) 3/258 1.3 31.1% intergenic (+27/‑328) lnt/PP_4791 apolipoprotein N‑acyltransferase/transposase
?NC_002947 = 5456680 25 (1.130)intergenic (+40/+121) PP_4791/PP_4792 transposase/hypothetical protein
* ? NC_002947 5758343 =18 (0.820)4 (0.240) 4/200 0.9 22.5% intergenic (+42/‑646) glnG/PP_5050 two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
?NC_002947 5760143 = 14 (0.840)intergenic (+189/+329) PP_5050/PP_5051 transposase/hypothetical protein