mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 196,390 | T→C | 29.5% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 27.4% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 15.9% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 230,432 | G→A | 23.4% | V31V (GTG→GTA) | PP_0179 → | putative efflux transporter |
| RA | 264,029 | C→G | 34.5% | A260A (GCC→GCG) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,032 | G→T | 33.0% | P261P (CCG→CCT) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,056 | C→T | 45.4% | D269D (GAC→GAT) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,059 | G→C | 45.5% | L270L (CTG→CTC) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,062 | C→T | 50.0% | D271D (GAC→GAT) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,063 | A→G | 50.0% | K272E (AAG→GAG) ‡ | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,064 | A→C | 50.1% | K272T (AAG→ACG) ‡ | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,065 | G→C | 49.9% | K272N (AAG→AAC) ‡ | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,068 | G→C | 50.0% | A273A (GCG→GCC) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,074 | G→A | 41.7% | E275E (GAG→GAA) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,077 | C→T | 41.7% | G276G (GGC→GGT) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,080 | G→T | 41.3% | A277A (GCG→GCT) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,081 | A→C | 43.5% | I278L (ATC→CTC) ‡ | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,083 | C→T | 43.5% | I278I (ATC→ATT) ‡ | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,087 | T→G | 43.6% | S280A (TCC→GCC) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,092 | G→A | 41.7% | K281K (AAG→AAA) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,094 | A→T | 41.8% | Y282F (TAC→TTC) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,098 | T→C | 41.6% | R283R (CGT→CGC) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,110 | G→A | 41.6% | Q287Q (CAG→CAA) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,132 | A→C | 37.6% | I295L (ATC→CTC) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,137 | C→T | 37.5% | Y296Y (TAC→TAT) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 264,140 | G→A | 37.5% | V297V (GTG→GTA) | gabD‑I → | succinate‑semialdehyde dehydrogenase |
| RA | 459,290 | T→A | 12.6% | T190S (ACC→TCC) | pqqB ← | coenzyme PQQ synthesis protein B |
| RA | 732,440 | C→T | 21.0% | G659G (GGC→GGT) | clpB → | chaperone protein ClpB |
| RA | 732,485 | G→C | 20.0% | V674V (GTG→GTC) | clpB → | chaperone protein ClpB |
| RA | 732,489 | C→T | 21.4% | L676L (CTG→TTG) ‡ | clpB → | chaperone protein ClpB |
| RA | 732,491 | G→C | 20.1% | L676L (CTG→CTC) ‡ | clpB → | chaperone protein ClpB |
| RA | 732,494 | C→T | 20.0% | D677D (GAC→GAT) | clpB → | chaperone protein ClpB |
| RA | 732,498 | G→A | 19.2% | V679M (GTG→ATG) ‡ | clpB → | chaperone protein ClpB |
| RA | 732,500 | G→C | 19.4% | V679V (GTG→GTC) ‡ | clpB → | chaperone protein ClpB |
| RA | 732,506 | A→G | 19.2% | K681K (AAA→AAG) | clpB → | chaperone protein ClpB |
| RA | 732,509 | C→G | 18.5% | A682A (GCC→GCG) | clpB → | chaperone protein ClpB |
| RA | 732,512 | C→T | 18.5% | H683H (CAC→CAT) | clpB → | chaperone protein ClpB |
| RA | 732,534 | T→C | 20.8% | L691L (TTG→CTG) | clpB → | chaperone protein ClpB |
| RA | 732,542 | G→T | 16.7% | V693V (GTG→GTT) | clpB → | chaperone protein ClpB |
| RA | 732,545 | G→T | 17.4% | L694L (CTG→CTT) | clpB → | chaperone protein ClpB |
| RA | 732,548 | A→T | 16.2% | E695D (GAA→GAT) | clpB → | chaperone protein ClpB |
| RA | 732,554 | C→T | 16.7% | G697G (GGC→GGT) | clpB → | chaperone protein ClpB |
| RA | 732,557 | C→T | 16.6% | R698R (CGC→CGT) | clpB → | chaperone protein ClpB |
| RA | 922,569 | C→T | 15.4% | L154L (CTG→CTA) | PP_0803 ← | protein secretion ABC transporter permease |
| RA | 1,348,779:1 | +G | 100% | intergenic (‑239/+515) | galP‑I ← / ← PP_1174 | porin‑like protein/hypothetical protein |
| RA | 1,486,655 | A→C | 25.1% | A143A (GCA→GCC) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,656 | C→A | 22.5% | H144N (CAC→AAC) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,661 | G→A | 19.2% | K145K (AAG→AAA) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,664 | C→T | 19.2% | Y146Y (TAC→TAT) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,667 | T→G | 16.1% | P147P (CCT→CCG) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,674 | T→C | 14.3% | L150L (TTG→CTG) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,679 | T→A | 17.3% | S151S (TCT→TCA) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,712 | C→T | 20.5% | R162R (CGC→CGT) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,763 | A→G | 15.2% | A179A (GCA→GCG) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,766 | G→C | 21.4% | L180L (CTG→CTC) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,769 | C→T | 15.1% | D181D (GAC→GAT) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,486,799 | C→G | 27.4% | T191T (ACC→ACG) | yhdZ → | amino acid ABC transporter ATP‑binding protein |
| RA | 1,680,017 | T→G | 100% | T276P (ACC→CCC) | PP_1475 ← | CAIB/BAIF family protein |
| RA | 1,800,621 | C→T | 18.2% | A188V (GCC→GTC) | dnaEA → | DNA polymerase III subunit alpha |
| RA | 1,804,865 | C→A | 17.4% | G19G (GGC→GGA) | tilS → | tRNA lysidine(34) synthetase TilS |
| RA | 1,931,972 | G→A | 18.2% | R202W (CGG→TGG) | rluA ← | bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA |
| RA | 2,288,819 | T→C | 26.7% | F80L (TTC→CTC) | PP_2015 → | hypothetical protein |
| RA | 2,469,680 | G→A | 26.6% | R202K (AGG→AAG) | queF → | NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase |
| RA | 2,601,596 | A→G | 41.7% | T324A (ACC→GCC) | PP_2277 → | hypothetical protein |
| RA | 2,680,742 | A→G | 21.0% | D373G (GAC→GGC) | PP_2348 → | sensor histidine kinase |
| RA | 2,758,975 | T→C | 21.7% | A394A (GCA→GCG) | PP_2411 ← | MFS transporter |
| RA | 2,830,531 | G→A | 14.8% | A248T (GCC→ACC) | PP_2480 → | xanthine dehydrogenase accessory factor |
| RA | 3,150,691 | G→A | 22.2% | V222I (GTC→ATC) | msuE → | FMN reductase |
| RA | 3,276,928 | T→A | 17.4% | F241I (TTC→ATC) | eamA → | O‑acetylserine/cysteine export transporter |
| RA | 3,284,715 | G→A | 20.0% | P55L (CCC→CTC) | PP_2884 ← | XRE family transcriptional regulator |
| RA | 3,758,380 | A→G | 21.0% | Q619R (CAA→CGA) | PP_3319 → | GGDEF domain‑containing sensory box protein |
| RA | 3,758,459 | C→T | 21.0% | S645S (AGC→AGT) | PP_3319 → | GGDEF domain‑containing sensory box protein |
| RA | 3,795,913 | A→T | 18.7% | V192D (GTC→GAC) | PP_3355 ← | beta‑ketothiolase |
| RA | 3,824,314 | C→G | 100% | A279P (GCG→CCG) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,824,717 | C→A | 70.1% | M144I (ATG→ATT) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,827,925 | G→A | 100% | S29F (TCC→TTC) | ptxS ← | 2‑ketogluconate utilization repressor |
| RA | 4,419,739 | C→T | 25.0% | A32V (GCC→GTC) | PP_3906 → | hypothetical protein |
| RA | 4,561,536 | A→T | 22.2% | L189Q (CTG→CAG) | PP_4047 ← | hypothetical protein |
| RA | 4,579,147 | A→T | 36.1% | D156V (GAC→GTC) | PP_4057 → | membrane protein |
| RA | 4,637,297 | A→G | 100% | S143P (TCT→CCT) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| RA | 4,665,145 | G→C | 20.6% | G681R (GGC→CGC) | nuoG → | NADH‑quinone oxidoreductase subunit G |
| RA | 4,743,195:1 | +C | 100% | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,197 | A→G | 100% | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,199 | C→T | 100% | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,202 | C→T | 100% | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,205 | C→G | 100% | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,207 | 2 bp→CT | 100% | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,221 | C→T | 100% | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,223 | A→C | 100% | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,226 | 2 bp→GC | 100% | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,748,103 | G→A | 35.3% | Y292Y (TAC→TAT) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,106 | G→A | 35.3% | D291D (GAC→GAT) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,112 | C→A | 44.4% | V289V (GTG→GTT) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,148 | C→G | 37.6% | A277A (GCG→GCC) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,151 | C→G | 42.8% | V276V (GTG→GTC) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,157 | C→G | 40.7% | V274V (GTG→GTC) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,160 | T→G | 50.1% | K273N (AAA→AAC) ‡ | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,161 | T→C | 51.9% | K273R (AAA→AGA) ‡ | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,162 | T→G | 50.0% | K273Q (AAA→CAA) ‡ | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,163 | G→T | 40.9% | S272S (TCC→TCA) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,169 | T→C | 37.5% | K270K (AAA→AAG) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,178 | G→A | 47.6% | A267A (GCC→GCT) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,184 | G→A | 55.0% | H265H (CAC→CAT) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,202 | G→A | 26.9% | I259I (ATC→ATT) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,748,211 | G→A | 29.7% | A256A (GCC→GCT) | etfA ← | electron transfer flavoprotein subunit alpha |
| RA | 4,827,483 | A→G | 21.0% | Y1892H (TAC→CAC) | pvdL ← | non‑ribosomal peptide synthetase |
| RA | 4,872,107 | T→G | 20.0% | A630A (GCT→GCG) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,114 | G→T | 20.0% | V633L (GTG→TTG) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,115 | T→C | 19.9% | V633A (GTG→GCG) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,122 | Δ1 bp | 20.0% | coding (1905/2400 nt) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,125:1 | +G | 21.1% | coding (1908/2400 nt) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,149 | C→T | 25.0% | Y644Y (TAC→TAT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,150 | A→G | 23.5% | K645E (AAG→GAG) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,151 | A→T | 24.0% | K645M (AAG→ATG) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,153 | A→G | 23.5% | M646V (ATG→GTG) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,156 | T→G | 26.8% | L647V (TTG→GTG) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,157 | T→A | 26.7% | L647* (TTG→TAG) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,162 | G→A | 30.8% | A649T (GCC→ACC) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,167 | C→T | 33.3% | D650D (GAC→GAT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,170 | C→T | 33.3% | I651I (ATC→ATT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,173 | G→T | 35.7% | L652L (CTG→CTT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,179 | C→T | 33.3% | D654D (GAC→GAT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,180 | G→A | 33.3% | V655M (GTG→ATG) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,181 | T→C | 35.6% | V655A (GTG→GCG) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,186 | G→C | 35.7% | D657H (GAT→CAT) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,187 | A→G | 35.7% | D657G (GAT→GGT) ‡ | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,199 | C→G | 29.4% | P661R (CCT→CGT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,202 | C→T | 29.4% | A662V (GCG→GTG) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,206 | C→T | 27.8% | I663I (ATC→ATT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,209 | C→T | 26.3% | D664D (GAC→GAT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,212 | C→T | 26.3% | I665I (ATC→ATT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,215 | C→T | 26.3% | G666G (GGC→GGT) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,224 | G→A | 26.3% | E669E (GAG→GAA) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,227 | T→C | 26.3% | G670G (GGT→GGC) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 4,872,230 | T→C | 26.3% | G671G (GGT→GGC) | xdhB → | xanthine dehydrogenase subunit XdhB |
| RA | 5,359,049 | C→T | 25.0% | G561D (GGC→GAC) | infB ← | translation initiation factor IF‑2 |
| RA | 5,378,260 | C→G | 33.3% | V425V (GTG→GTC) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,261 | A→G | 33.3% | V425A (GTG→GCG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,262 | C→T | 35.0% | V425M (GTG→ATG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,284 | G→C | 36.8% | T417T (ACC→ACG) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,287 | G→C | 36.8% | T416T (ACC→ACG) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,293 | C→G | 33.3% | K414N (AAG→AAC) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,294 | T→C | 33.3% | K414R (AAG→AGG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,295 | T→G | 33.4% | K414Q (AAG→CAG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,296 | C→T | 33.3% | E413E (GAG→GAA) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,305 | C→G | 31.6% | A410A (GCG→GCC) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,306 | G→C | 31.6% | A410G (GCG→GGG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,307 | C→G | 31.6% | A410P (GCG→CCG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,311 | C→G | 30.0% | M408I (ATG→ATC) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,313 | T→A | 35.0% | M408L (ATG→TTG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,320 | G→A | 22.2% | G405G (GGC→GGT) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,323 | C→G | 22.3% | M404I (ATG→ATC) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,325 | T→G | 22.2% | M404L (ATG→CTG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,326 | G→C | 22.3% | T403T (ACC→ACG) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,332 | G→A | 23.5% | I401I (ATC→ATT) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,335 | A→G | 22.2% | G400G (GGT→GGC) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,338 | C→G | 23.5% | L399L (CTG→CTC) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,341 | G→C | 23.6% | T398T (ACC→ACG) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,343 | T→A | 23.5% | T398S (ACC→TCC) ‡ | dnaK ← | chaperone protein DnaK |
| RA | 5,378,344 | C→A | 23.6% | L397L (CTG→CTT) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,351 | C→G | 25.5% | S395T (AGC→ACC) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,353 | G→C | 25.0% | V394V (GTC→GTG) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,359 | C→G | 26.7% | L392L (CTG→CTC) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,368 | G→A | 25.0% | V389V (GTC→GTT) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,374 | T→C | 26.7% | K387K (AAA→AAG) | dnaK ← | chaperone protein DnaK |
| RA | 5,378,377 | C→G | 26.7% | V386V (GTG→GTC) | dnaK ← | chaperone protein DnaK |
| RA | 5,605,111 | T→A | 30.8% | E115V (GAA→GTA) | PP_4924 ← | subtilase family serine protease |
| RA | 5,739,073 | G→A | 26.6% | H117H (CAC→CAT) | hutU ← | urocanate hydratase |
| RA | 5,739,076 | T→A | 26.8% | E116D (GAA→GAT) | hutU ← | urocanate hydratase |
| RA | 5,739,083 | T→G | 25.1% | N114T (AAC→ACC) | hutU ← | urocanate hydratase |
| RA | 5,739,085 | G→C | 25.0% | A113A (GCC→GCG) | hutU ← | urocanate hydratase |
| RA | 5,739,091 | G→A | 23.5% | H111H (CAC→CAT) | hutU ← | urocanate hydratase |
| RA | 5,739,094 | T→C | 25.0% | P110P (CCA→CCG) | hutU ← | urocanate hydratase |
| RA | 5,739,100 | C→G | 21.0% | L108L (CTG→CTC) | hutU ← | urocanate hydratase |
| RA | 5,739,103 | G→A | 21.0% | N107N (AAC→AAT) | hutU ← | urocanate hydratase |
| RA | 5,739,109 | G→A | 18.1% | N105N (AAC→AAT) | hutU ← | urocanate hydratase |
| RA | 5,739,115 | A→G | 20.6% | I103I (ATT→ATC) | hutU ← | urocanate hydratase |
| RA | 5,739,118 | C→G | 18.2% | L102L (CTG→CTC) | hutU ← | urocanate hydratase |
| RA | 5,739,121 | C→A | 18.2% | V101V (GTG→GTT) | hutU ← | urocanate hydratase |
| RA | 5,739,133 | G→A | 23.5% | N97N (AAC→AAT) ‡ | hutU ← | urocanate hydratase |
| RA | 5,739,135 | T→C | 23.5% | N97D (AAC→GAC) ‡ | hutU ← | urocanate hydratase |
| RA | 5,739,136 | G→C | 23.5% | S96R (AGC→AGG) ‡ | hutU ← | urocanate hydratase |
| RA | 5,739,137 | C→T | 23.5% | S96N (AGC→AAC) ‡ | hutU ← | urocanate hydratase |
| RA | 5,739,145 | C→G | 22.2% | K93N (AAG→AAC) ‡ | hutU ← | urocanate hydratase |
| RA | 5,739,146 | T→C | 22.2% | K93R (AAG→AGG) ‡ | hutU ← | urocanate hydratase |
| RA | 5,739,147 | T→G | 22.2% | K93Q (AAG→CAG) ‡ | hutU ← | urocanate hydratase |
| RA | 5,739,154 | A→G | 38.1% | G90G (GGT→GGC) | hutU ← | urocanate hydratase |
| RA | 5,739,157 | G→C | 36.0% | V89V (GTC→GTG) | hutU ← | urocanate hydratase |
| RA | 5,762,606 | C→G | 25.0% | L38L (CTG→CTC) | PP_5055 ← | Sulfurtransferase |
| RA | 5,851,574 | G→T | 20.0% | A101S (GCC→TCC) | ilvD → | dihydroxy‑acid dehydratase |
| RA | 5,851,580 | G→T | 22.2% | A103S (GCC→TCC) ‡ | ilvD → | dihydroxy‑acid dehydratase |
| RA | 5,851,582 | C→G | 22.2% | A103A (GCC→GCG) ‡ | ilvD → | dihydroxy‑acid dehydratase |
| RA | 5,851,585 | G→T | 25.0% | V104V (GTG→GTT) | ilvD → | dihydroxy‑acid dehydratase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 16580 | 16635 | 56 | 2 [1] | [1] 2 | [PP_5421] | [PP_5421] |
| * | * | ÷ | NC_002947 | 17889 | 18047 | 159 | 2 [1] | [1] 2 | PP_0014 | transposase |
| * | * | ÷ | NC_002947 | 18673 | 18753 | 81 | 2 [0] | [1] 2 | PP_0014 | transposase |
| * | * | ÷ | NC_002947 | 18932 | 19141 | 210 | 2 [1] | [1] 2 | PP_0014 | transposase |
| * | * | ÷ | NC_002947 | 19292 | 19359 | 68 | 3 [1] | [1] 2 | PP_0015 | transposon protein |
| * | * | ÷ | NC_002947 | 19534 | 19972 | 439 | 2 [1] | [1] 2 | PP_0015 | transposon protein |
| * | * | ÷ | NC_002947 | 20596 | 20690 | 95 | 2 [0] | [0] 2 | PP_0016 | hypothetical protein |
| * | * | ÷ | NC_002947 | 21278 | 21442 | 165 | 2 [1] | [1] 2 | PP_0016 | hypothetical protein |
| * | * | ÷ | NC_002947 | 21591 | 21827 | 237 | 2 [1] | [1] 2 | PP_0016 | hypothetical protein |
| * | * | ÷ | NC_002947 | 22122 | 22246 | 125 | 2 [1] | [1] 2 | [PP_0017] | [PP_0017] |
| * | * | ÷ | NC_002947 | 23028 | 23354 | 327 | 3 [1] | [1] 2 | [PP_0018] | [PP_0018] |
| * | * | ÷ | NC_002947 | 23560 | 23715 | 156 | 2 [1] | [1] 2 | PP_0018 | hypothetical protein |
| * | * | ÷ | NC_002947 | 24642 | 24656 | 15 | 2 [0] | [1] 2 | PP_0019 | hypothetical protein |
| * | * | ÷ | NC_002947 | 26507 | 26593 | 87 | 2 [1] | [1] 2 | PP_0021 | hypothetical protein |
| * | * | ÷ | NC_002947 | 51899 | 51914 | 16 | 2 [1] | [1] 2 | czcC‑I | cobalt‑zinc‑cadmium resistance protein |
| * | * | ÷ | NC_002947 | 53548 | 53681 | 134 | 2 [1] | [1] 2 | opdT‑I | tyrosine‑specific outer membrane porin D |
| * | * | ÷ | NC_002947 | 54535 | 54680 | 146 | 2 [1] | [1] 4 | czcR‑II | response regulator |
| * | * | ÷ | NC_002947 | 97531 | 97608 | 78 | 2 [1] | [1] 2 | [PP_0090]–[PP_0091] | [PP_0090],[PP_0091] |
| * | * | ÷ | NC_002947 | 170808 | 170858 | 51 | 2 [1] | [1] 2 | [PP_0159] | [PP_0159] |
| * | * | ÷ | NC_002947 | 171364–172965 | 176292–172984 | 20–4929 | 2 [1] | [1] 3 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176648–178395 | 181728–178414 | 20–5081 | 2 [1] | [1] 2 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 220535 | 220567 | 33 | 2 [1] | [0] 5 | [PP_0168] | [PP_0168] |
| * | * | ÷ | NC_002947 | 235371 | 235385 | 15 | 2 [0] | [1] 2 | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase |
| * | * | ÷ | NC_002947 | 284562 | 284600 | 39 | 2 [1] | [1] 2 | betT‑II/atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| * | * | ÷ | NC_002947 | 314417 | 314420 | 4 | 5 [0] | [0] 8 | yrfG | purine nucleotidase |
| * | * | ÷ | NC_002947 | 315996 | 316041 | 46 | 2 [1] | [0] 2 | cysQ/PP_0262 | 3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein |
| * | * | ÷ | NC_002947 | 336240 | 336321 | 82 | 2 [1] | [1] 4 | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 337748 | 337822 | 75 | 3 [1] | [1] 2 | [PP_0279] | [PP_0279] |
| * | * | ÷ | NC_002947 | 445069 | 445167 | 99 | 2 [1] | [1] 2 | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| * | * | ÷ | NC_002947 | 549989 | 550429–550058 | 70–441 | 2 [1] | [0] 2 | tufB | elongation factor Tu‑B |
| * | * | ÷ | NC_002947 | 614268 | 614346 | 79 | 2 [1] | [1] 2 | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| * | * | ÷ | NC_002947 | 648223 | 648242 | 20 | 3 [1] | [1] 2 | [acoR] | [acoR] |
| * | * | ÷ | NC_002947 | 668060 | 668143 | 84 | 2 [1] | [1] 3 | yfhM/PP_0571 | lipoprotein/membrane protein |
| * | * | ÷ | NC_002947 | 681183 | 681328 | 146 | 2 [1] | [1] 2 | [PP_0583] | [PP_0583] |
| * | * | ÷ | NC_002947 | 718449 | 718512 | 64 | 2 [1] | [1] 2 | [PP_0613] | [PP_0613] |
| * | * | ÷ | NC_002947 | 750332 | 750593 | 262 | 2 [1] | [1] 4 | PP_0640 | hypothetical protein |
| * | * | ÷ | NC_002947 | 750730 | 751116 | 387 | 2 [1] | [0] 2 | [PP_0640]–[PP_5450] | [PP_0640],[PP_5450] |
| * | * | ÷ | NC_002947 | 790592 | 790665 | 74 | 2 [1] | [1] 2 | PP_0676 | transcription elongation factor |
| * | * | ÷ | NC_002947 | 796865 | 796975 | 111 | 2 [1] | [1] 2 | PP_0681/PP_0682 | hypothetical protein/inner membrane protein |
| * | * | ÷ | NC_002947 | 798609 | 798653 | 45 | 2 [1] | [1] 2 | [fklB‑I] | [fklB‑I] |
| * | * | ÷ | NC_002947 | 876383 | 876394 | 12 | 2 [1] | [1] 3 | rsmC | 16S rRNA methyltransferase |
| * | * | ÷ | NC_002947 | 883854 | 883872 | 19 | 2 [1] | [1] 2 | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 955141 | 955161 | 21 | 4 [1] | [1] 2 | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
| * | * | ÷ | NC_002947 | 1076236 | 1076254 | 19 | 2 [1] | [1] 2 | mreB | cell wall structural actin‑like protein MreB |
| * | * | ÷ | NC_002947 | 1114887 | 1114952 | 66 | 2 [1] | [1] 2 | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase |
| * | * | ÷ | NC_002947 | 1124546 | 1124567 | 22 | 2 [1] | [1] 2 | gcvT‑I | aminomethyltransferase |
| * | * | ÷ | NC_002947 | 1156329 | 1156374 | 46 | 2 [1] | [1] 2 | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase |
| * | * | ÷ | NC_002947 | 1184567 | 1184616 | 50 | 2 [0] | [1] 3 | mltF/purL | membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase |
| * | * | ÷ | NC_002947 | 1278905 | 1279149 | 245 | 2 [1] | [0] 2 | PP_1117 | hypothetical protein |
| * | * | ÷ | NC_002947 | 1279188 | 1279209 | 22 | 2 [0] | [0] 2 | PP_1117 | hypothetical protein |
| * | * | ÷ | NC_002947 | 1280249 | 1280362 | 114 | 2 [0] | [0] 2 | PP_1117/PP_5742 | hypothetical protein/membrane protein |
| * | * | ÷ | NC_002947 | 1280463 | 1280490 | 28 | 2 [0] | [1] 2 | PP_1117/PP_5742 | hypothetical protein/membrane protein |
| * | * | ÷ | NC_002947 | 1342239 | 1342276 | 38 | 4 [0] | [1] 2 | PP_1166/PP_1167 | DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM |
| * | * | ÷ | NC_002947 | 1367573 | 1367793 | 221 | 2 [1] | [1] 2 | [PP_1193] | [PP_1193] |
| * | * | ÷ | NC_002947 | 1370767 | 1370836 | 70 | 2 [1] | [1] 4 | PP_1195 | hypothetical protein |
| * | * | ÷ | NC_002947 | 1403579 | 1403622 | 44 | 2 [0] | [1] 2 | [PP_1228] | [PP_1228] |
| * | * | ÷ | NC_002947 | 1409117 | 1409133 | 17 | 2 [0] | [0] 3 | PP_1230/nadA | hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit |
| * | * | ÷ | NC_002947 | 1487042 | 1487091 | 50 | 2 [1] | [1] 2 | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| * | * | ÷ | NC_002947 | 1499447 | 1499532 | 86 | 2 [1] | [1] 2 | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| * | * | ÷ | NC_002947 | 1506933 | 1506954 | 22 | 2 [0] | [1] 2 | petC/sspA | ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A |
| * | * | ÷ | NC_002947 | 1531825 | 1531827 | 3 | 2 [0] | [0] 2 | PP_1344 | hypothetical protein |
| * | * | ÷ | NC_002947 | 1570462 | 1570534 | 73 | 2 [1] | [1] 2 | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| * | * | ÷ | NC_002947 | 1601137 | 1601152 | 16 | 2 [0] | [1] 3 | bglX | beta‑D‑glucoside glucohydrolase |
| * | * | ÷ | NC_002947 | 1615734 | 1615757 | 24 | 2 [1] | [1] 2 | PP_1415 | membrane protein |
| * | * | ÷ | NC_002947 | 1703235 | 1703309 | 75 | 2 [1] | [1] 2 | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 1704648 | 1704696 | 49 | 2 [1] | [1] 2 | [PP_1498]–[PP_1499] | [PP_1498],[PP_1499] |
| * | * | ÷ | NC_002947 | 1712092 | 1712143 | 52 | 3 [1] | [1] 2 | ppc/adk | phosphoenolpyruvate carboxylase/adenylate kinase |
| * | * | ÷ | NC_002947 | 1731175 | 1731243 | 69 | 2 [1] | [0] 2 | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase |
| * | * | ÷ | NC_002947 | 1734801 | 1734889 | 89 | 2 [1] | [1] 5 | [tcdA] | [tcdA] |
| * | * | ÷ | NC_002947 | 1921566 | 1921639 | 74 | 2 [1] | [1] 2 | [PP_1720]–[PP_1721] | [PP_1720],[PP_1721] |
| * | * | ÷ | NC_002947 | 1947819 | 1947866 | 48 | 2 [1] | [0] 2 | PP_1748/PP_1749 | hypothetical protein/acetyltransferase |
| * | * | ÷ | NC_002947 | 1985634 | 1985730 | 97 | 2 [1] | [0] 2 | cpsG | phosphomannomutase |
| * | * | ÷ | NC_002947 | 1988121 | 1988258 | 138 | 2 [1] | [1] 2 | PP_1779 | lipopolysaccharide ABC transporter ATP‑binding protein |
| * | * | ÷ | NC_002947 | 2000854 | 2000877 | 24 | 2 [1] | [0] 2 | PP_1786 | glycosyl transferase |
| * | * | ÷ | NC_002947 | 2003691 | 2004068 | 378 | 2 [1] | [1] 3 | PP_1787 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2004319 | 2004392 | 74 | 2 [1] | [1] 2 | PP_1787 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2004629 | 2004812 | 184 | 2 [1] | [1] 2 | [PP_1788] | [PP_1788] |
| * | * | ÷ | NC_002947 | 2005006 | 2005131 | 126 | 2 [1] | [0] 3 | PP_1788 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2005268 | 2005515 | 248 | 3 [0] | [1] 2 | PP_1788 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2049879 | 2049961 | 83 | 2 [1] | [1] 4 | PP_1820 | benzoate transport protein |
| * | * | ÷ | NC_002947 | 2052536 | 2052588 | 53 | 2 [1] | [1] 2 | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 2105224 | 2105332 | 109 | 2 [1] | [1] 2 | PP_t24/PP_1879 | tRNA‑Gly/hypothetical protein |
| * | * | ÷ | NC_002947 | 2144378 | 2144414 | 37 | 2 [1] | [1] 2 | PP_1897 | DNA internalization‑related competence protein ComEC/Rec2 |
| * | * | ÷ | NC_002947 | 2179846 | 2179940 | 95 | 2 [1] | [1] 2 | PP_1931 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2180078 | 2180101 | 24 | 2 [1] | [1] 2 | PP_1931 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2184558 | 2184698 | 141 | 2 [1] | [1] 2 | [PP_5488] | [PP_5488] |
| * | * | ÷ | NC_002947 | 2185851 | 2185895 | 45 | 2 [1] | [1] 2 | PP_5489/PP_5490 | hypothetical protein/site‑specific DNA recombinase |
| * | * | ÷ | NC_002947 | 2186235 | 2186590 | 356 | 2 [1] | [1] 2 | [PP_5490] | [PP_5490] |
| * | * | ÷ | NC_002947 | 2187415 | 2187596 | 182 | 3 [1] | [1] 2 | PP_1936 | membrane protein |
| * | * | ÷ | NC_002947 | 2188572 | 2188783 | 212 | 2 [1] | [1] 2 | PP_1936 | membrane protein |
| * | * | ÷ | NC_002947 | 2189155 | 2189191 | 37 | 2 [1] | [0] 2 | PP_1936 | membrane protein |
| * | * | ÷ | NC_002947 | 2189867 | 2189909 | 43 | 2 [1] | [0] 2 | PP_5491 | SEC‑C motif domain‑containing protein |
| * | * | ÷ | NC_002947 | 2190530 | 2190558 | 29 | 2 [1] | [1] 2 | PP_5492 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2191520 | 2191619 | 100 | 3 [1] | [1] 2 | PP_1937 | helicase |
| * | * | ÷ | NC_002947 | 2191746 | 2191798 | 53 | 2 [1] | [0] 2 | PP_1937 | helicase |
| * | * | ÷ | NC_002947 | 2192410 | 2192449 | 40 | 2 [0] | [0] 2 | PP_1937 | helicase |
| * | * | ÷ | NC_002947 | 2192765 | 2192881 | 117 | 2 [0] | [1] 2 | PP_1937 | helicase |
| * | * | ÷ | NC_002947 | 2193018 | 2193183 | 166 | 2 [1] | [1] 2 | PP_1937 | helicase |
| * | * | ÷ | NC_002947 | 2193320 | 2193389 | 70 | 2 [1] | [1] 2 | PP_1937 | helicase |
| * | * | ÷ | NC_002947 | 2193526 | 2193870 | 345 | 2 [1] | [1] 2 | PP_1937 | helicase |
| * | * | ÷ | NC_002947 | 2209988 | 2210020 | 33 | 3 [1] | [1] 4 | PP_1951 | short‑chain dehydrogenase/reductase family oxidoreductase |
| * | * | ÷ | NC_002947 | 2217481 | 2217519 | 39 | 2 [0] | [1] 2 | PP_1957/PP_5493 | Pdr/VanB family oxidoreductase/hypothetical protein |
| * | * | ÷ | NC_002947 | 2217775 | 2217837 | 63 | 2 [1] | [1] 2 | PP_1957/PP_5493 | Pdr/VanB family oxidoreductase/hypothetical protein |
| * | * | ÷ | NC_002947 | 2217961 | 2218098 | 138 | 2 [1] | [1] 2 | [PP_5493] | [PP_5493] |
| * | * | ÷ | NC_002947 | 2218406 | 2218502 | 97 | 2 [1] | [1] 2 | PP_5493/PP_5494 | hypothetical protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 2220000 | 2220165 | 166 | 2 [1] | [1] 2 | [PP_1958] | [PP_1958] |
| * | * | ÷ | NC_002947 | 2220307 | 2220601 | 295 | 2 [1] | [0] 2 | [PP_5495] | [PP_5495] |
| * | * | ÷ | NC_002947 | 2220986 | 2221085 | 100 | 2 [1] | [1] 2 | PP_1959 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2221618 | 2221640 | 23 | 2 [0] | [0] 2 | PP_1959 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2222356 | 2222554 | 199 | 2 [1] | [1] 2 | PP_1960 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2223149 | 2223361 | 213 | 3 [1] | [1] 2 | PP_1960 | hypothetical protein |
| * | * | ÷ | NC_002947 | 2226014 | 2226231 | 218 | 2 [1] | [1] 2 | PP_1962 | site‑specific recombinase |
| * | * | ÷ | NC_002947 | 2238837 | 2238905 | 69 | 2 [1] | [1] 2 | [uvrB] | [uvrB] |
| * | * | ÷ | NC_002947 | 2284729 | 2284747 | 19 | 3 [1] | [1] 5 | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | * | ÷ | NC_002947 | 2303484 | 2303492 | 9 | 4 [0] | [0] 2 | sbcD/PP_5497 | exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein |
| * | * | ÷ | NC_002947 | 2592481 | 2592535 | 55 | 3 [1] | [1] 2 | PP_2267 | single‑stranded DNA‑binding protein |
| * | * | ÷ | NC_002947 | 2665970 | 2666015 | 46 | 3 [1] | [1] 2 | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
| * | * | ÷ | NC_002947 | 2670041 | 2670052 | 12 | 2 [1] | [1] 2 | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| * | * | ÷ | NC_002947 | 2839048 | 2839138 | 91 | 2 [1] | [1] 2 | sad‑I/PP_2489 | NAD+‑dependent succinate semialdehyde dehydrogenase/xenobiotic reductase |
| * | * | ÷ | NC_002947 | 2939640 | 2941326–2939663 | 24–1687 | 4 [1] | [1] 2 | PP_2570 | PP_2570 |
| * | * | ÷ | NC_002947 | 2960760 | 2960788 | 29 | 2 [1] | [1] 2 | PP_2589/PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| * | * | ÷ | NC_002947 | 3055141 | 3055199 | 59 | 2 [1] | [0] 2 | [PP_2664] | [PP_2664] |
| * | * | ÷ | NC_002947 | 3154262 | 3154275 | 14 | 3 [0] | [1] 2 | PP_2768 | branched‑chain amino acid ABC transporter permease |
| * | * | ÷ | NC_002947 | 3341125 | 3341151 | 27 | 2 [1] | [0] 2 | PP_2935/ybiT | membrane protein/ABC‑F family ATPase |
| * | * | ÷ | NC_002947 | 3392004 | 3392034 | 31 | 2 [1] | [1] 2 | PP_2992 | hypothetical protein |
| * | * | ÷ | NC_002947 | 3468796 | 3468835 | 40 | 2 [0] | [1] 4 | PP_3081/PP_5560 | hypothetical protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 3582844 | 3582861 | 18 | 2 [0] | [0] 3 | benR/PP_3160 | BenABC operon transcriptional activator/hypothetical protein |
| * | * | ÷ | NC_002947 | 3778303 | 3778361 | 59 | 2 [1] | [1] 2 | PP_3338/PP_3339 | cytochrome bd‑type quinol oxidase/hypothetical protein |
| * | * | ÷ | NC_002947 | 3930339 | 3930364 | 26 | 2 [0] | [1] 2 | peaE/PP_3464 | phenylacetaldehyde dehydrogenase/hypothetical protein |
| * | * | ÷ | NC_002947 | 4034124 | 4034151 | 28 | 2 [1] | [1] 2 | PP_3554/PP_3555 | acyl‑CoA dehydrogenase family protein/transmembrane sensor |
| * | * | ÷ | NC_002947 | 4051862 | 4051880 | 19 | 2 [1] | [1] 2 | quiA/oprB‑III | quinate dehydrogenase/carbohydrate‑selective porin |
| * | * | ÷ | NC_002947 | 4090580 | 4090627 | 48 | 4 [1] | [0] 2 | PP_3598/kdgD | peptidase C26/5‑dehydro‑4‑deoxyglucarate dehydratase |
| * | * | ÷ | NC_002947 | 4151931 | 4152100 | 170 | 2 [1] | [1] 2 | [PP_3654] | [PP_3654] |
| * | * | ÷ | NC_002947 | 4172123 | 4172174 | 52 | 3 [1] | [1] 2 | katG/PP_3669 | catalase‑peroxidase/LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 4178118 | 4178265 | 148 | 2 [1] | [1] 2 | PP_3676 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4179150 | 4179223 | 74 | 3 [1] | [1] 2 | PP_3676 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4180233 | 4180370 | 138 | 3 [1] | [1] 3 | PP_3677 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4181001 | 4181063 | 63 | 2 [0] | [1] 2 | PP_3677 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4181200 | 4181421 | 222 | 2 [1] | [1] 3 | PP_3677 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4181558 | 4181636 | 79 | 3 [1] | [1] 2 | [PP_3677]–[PP_5610] | [PP_3677],[PP_5610] |
| * | * | ÷ | NC_002947 | 4181811 | 4182461 | 651 | 3 [1] | [1] 2 | [PP_5610]–[PP_3678] | [PP_5610],[PP_3678] |
| * | * | ÷ | NC_002947 | 4182985 | 4183126 | 142 | 2 [1] | [1] 2 | PP_3678 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4184816 | 4184990 | 175 | 2 [1] | [1] 2 | PP_3680 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4185563 | 4185633 | 71 | 2 [0] | [1] 3 | PP_3680 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4186097 | 4186276 | 180 | 2 [1] | [1] 2 | [PP_3680]–[PP_3681] | [PP_3680],[PP_3681] |
| * | * | ÷ | NC_002947 | 4205871 | 4205961 | 91 | 2 [1] | [1] 2 | PP_3691 | DNA helicase‑related protein |
| * | * | ÷ | NC_002947 | 4208650 | 4208698 | 49 | 2 [1] | [1] 3 | PP_3691 | DNA helicase‑related protein |
| * | * | ÷ | NC_002947 | 4210465 | 4210609 | 145 | 2 [1] | [1] 3 | PP_3692 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4212542 | 4212733 | 192 | 2 [1] | [1] 2 | [PP_3692] | [PP_3692] |
| * | * | ÷ | NC_002947 | 4212884 | 4213001 | 118 | 2 [1] | [0] 2 | PP_5621 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4214827 | 4214988 | 162 | 2 [1] | [1] 2 | PP_3695 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4222576 | 4222674 | 99 | 4 [0] | [0] 2 | PP_3699 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4223867 | 4223955 | 89 | 5 [1] | [1] 2 | PP_3700 | chromosome partitioning ATPase |
| * | * | ÷ | NC_002947 | 4227018 | 4227110 | 93 | 2 [1] | [1] 3 | PP_3705 | membrane protein |
| * | * | ÷ | NC_002947 | 4229124 | 4229412 | 289 | 2 [1] | [1] 2 | PP_3706 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4230675 | 4230815 | 141 | 2 [1] | [1] 2 | [PP_3707] | [PP_3707] |
| * | * | ÷ | NC_002947 | 4231275 | 4231335 | 61 | 4 [1] | [1] 2 | PP_3707 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4231550 | 4231878 | 329 | 2 [0] | [0] 2 | PP_3707 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4232477 | 4232599 | 123 | 2 [1] | [1] 2 | PP_3708 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4322789 | 4322918 | 130 | 2 [1] | [1] 3 | PP_3791/PP_5629 | site‑specific recombinase/protease/amidase |
| * | * | ÷ | NC_002947 | 4340405 | 4340468 | 64 | 3 [1] | [0] 2 | PP_3812/PP_5632 | lipase/allo‑isoleucine metabolism protein |
| * | * | ÷ | NC_002947 | 4342007 | 4342090 | 84 | 2 [1] | [1] 2 | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| * | * | ÷ | NC_002947 | 4346235 | 4346277 | 43 | 2 [1] | [0] 2 | [PP_3817] | [PP_3817] |
| * | * | ÷ | NC_002947 | 4355125 | 4355164 | 40 | 3 [1] | [0] 3 | yrpB | 2‑nitropropane dioxygenase |
| * | * | ÷ | NC_002947 | 4499102 | 4499119 | 18 | 2 [0] | [1] 2 | PP_5651 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4500165 | 4500273 | 109 | 2 [0] | [1] 2 | PP_3988 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4501075 | 4501240 | 166 | 2 [1] | [1] 2 | PP_3988 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4501455 | 4501589 | 135 | 2 [1] | [1] 2 | PP_3988 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4505720 | 4505797 | 78 | 2 [1] | [1] 2 | xanP/tusD | xanthine permease/sulfur transfer protein complex subunit TusD |
| * | * | ÷ | NC_002947 | 4531983 | 4532022 | 40 | 2 [1] | [1] 2 | PP_4018/topB | acetyltransferase/DNA topoisomerase III |
| * | * | ÷ | NC_002947 | 4535575 | 4535589 | 15 | 2 [0] | [1] 2 | PP_4020/cpo | oxidoreductase/non‑heme chloroperoxidase |
| * | * | ÷ | NC_002947 | 4575178 | 4575256 | 79 | 2 [1] | [1] 2 | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
| * | * | ÷ | NC_002947 | 4585515 | 4585554 | 40 | 2 [1] | [1] 2 | treSB/glgE | bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase |
| * | * | ÷ | NC_002947 | 4622002 | 4622028 | 27 | 3 [1] | [1] 5 | PP_5652/PP_5654 | hypothetical protein/phosphotriesterase |
| * | * | ÷ | NC_002947 | 4677258 | 4677349 | 92 | 2 [1] | [1] 6 | [PP_4137] | [PP_4137] |
| * | * | ÷ | NC_002947 | 4742793 | 4742824 | 32 | 3 [0] | [1] 2 | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | * | ÷ | NC_002947 | 4817041 | 4817129 | 89 | 2 [0] | [1] 2 | PP_4240 | microcin B17 processing protein McbD |
| * | * | ÷ | NC_002947 | 4847119 | 4847215 | 97 | 2 [0] | [1] 2 | PP_4260/PP_4261 | hypothetical protein/cation‑transporting P‑type ATPase |
| * | * | ÷ | NC_002947 | 4854413 | 4854487 | 75 | 3 [1] | [1] 2 | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| * | * | ÷ | NC_002947 | 4888138 | 4888168 | 31 | 2 [1] | [1] 3 | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein |
| * | * | ÷ | NC_002947 | 4898379 | 4898408 | 30 | 3 [1] | [1] 3 | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| * | * | ÷ | NC_002947 | 4940588 | 4940606 | 19 | 4 [0] | [0] 2 | ddlA | D‑alanine‑‑D‑alanine ligase A |
| * | * | ÷ | NC_002947 | 4941088 | 4941241 | 154 | 2 [1] | [1] 2 | ddlA/PP_4348 | D‑alanine‑‑D‑alanine ligase A/cystathionine beta‑lyase |
| * | * | ÷ | NC_002947 | 4942216 | 4942312 | 97 | 2 [1] | [1] 2 | ddlA/PP_4348 | D‑alanine‑‑D‑alanine ligase A/cystathionine beta‑lyase |
| * | * | ÷ | NC_002947 | 4942996 | 4943055 | 60 | 2 [1] | [1] 2 | PP_4348 | cystathionine beta‑lyase |
| * | * | ÷ | NC_002947 | 4943300 | 4943367 | 68 | 2 [1] | [1] 2 | PP_4348 | cystathionine beta‑lyase |
| * | * | ÷ | NC_002947 | 4943740 | 4943903 | 164 | 3 [1] | [1] 3 | PP_4349 | hypothetical protein |
| * | * | ÷ | NC_002947 | 4944954 | 4944962 | 9 | 4 [1] | [0] 3 | PP_4350 | class V NifS/IscS family aminotransferase |
| * | * | ÷ | NC_002947 | 4947250 | 4947283 | 34 | 3 [0] | [1] 2 | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| * | * | ÷ | NC_002947 | 4952873 | 4952955 | 83 | 2 [0] | [0] 2 | fliL/fliK | flagellar protein FliL/flagellar hook‑length control protein FliK |
| * | * | ÷ | NC_002947 | 5005388 | 5005591 | 204 | 2 [1] | [0] 2 | PP_4409 | site‑specific recombinase |
| * | * | ÷ | NC_002947 | 5007023 | 5007204 | 182 | 2 [0] | [1] 2 | PP_4410 | hypothetical protein |
| * | * | ÷ | NC_002947 | 5007639 | 5007742 | 104 | 2 [1] | [0] 2 | PP_4410 | hypothetical protein |
| * | * | ÷ | NC_002947 | 5021690 | 5021817 | 128 | 2 [1] | [1] 2 | PP_4423 | hypothetical protein |
| * | * | ÷ | NC_002947 | 5022590 | 5022634 | 45 | 2 [1] | [1] 2 | PP_4424 | HTH‑type transcriptional regulator |
| * | * | ÷ | NC_002947 | 5023456 | 5023625 | 170 | 2 [1] | [1] 2 | [PP_4425] | [PP_4425] |
| * | * | ÷ | NC_002947 | 5024725 | 5024907 | 183 | 2 [1] | [1] 2 | PP_4427 | amino acid ABC transporter permease |
| * | * | ÷ | NC_002947 | 5026393 | 5026496 | 104 | 2 [1] | [1] 3 | PP_4429 | GntR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 5030588 | 5030713 | 126 | 2 [1] | [1] 2 | PP_4432 | Xaa‑Pro aminopeptidase |
| * | * | ÷ | NC_002947 | 5031455 | 5031521 | 67 | 3 [1] | [1] 2 | PP_4433 | amino acid MFS transporter |
| * | * | ÷ | NC_002947 | 5033639 | 5033686 | 48 | 2 [0] | [0] 2 | dadA‑I | D‑amino acid dehydrogenase small subunit |
| * | * | ÷ | NC_002947 | 5064816 | 5064834 | 19 | 2 [1] | [1] 2 | PP_4460 | LysR family transcriptional regulator |
| * | * | ÷ | NC_002947 | 5065530 | 5065578 | 49 | 2 [0] | [1] 2 | PP_4460/PP_4461 | LysR family transcriptional regulator/MFS transporter |
| * | * | ÷ | NC_002947 | 5066263 | 5066299 | 37 | 2 [1] | [0] 2 | PP_4461 | MFS transporter |
| * | * | ÷ | NC_002947 | 5066770 | 5066884 | 115 | 2 [1] | [0] 2 | PP_4461 | MFS transporter |
| * | * | ÷ | NC_002947 | 5069874 | 5069882 | 9 | 2 [1] | [1] 2 | PP_4464/PP_4465 | LysR family transcriptional regulator/porin |
| * | * | ÷ | NC_002947 | 5070462 | 5070624 | 163 | 2 [1] | [1] 2 | PP_4465 | porin |
| * | * | ÷ | NC_002947 | 5071112 | 5071257 | 146 | 2 [1] | [1] 2 | PP_4465 | porin |
| * | * | ÷ | NC_002947 | 5072452 | 5072571 | 120 | 2 [1] | [1] 2 | PP_4466 | TauD/TfdA family dioxygenase |
| * | * | ÷ | NC_002947 | 5072708 | 5072840 | 133 | 2 [1] | [1] 2 | PP_4466 | TauD/TfdA family dioxygenase |
| * | * | ÷ | NC_002947 | 5073776 | 5074029 | 254 | 2 [1] | [1] 3 | [PP_4467] | [PP_4467] |
| * | * | ÷ | NC_002947 | 5099205 | 5099245 | 41 | 2 [0] | [1] 2 | PP_mr66/acsA‑I | P6/acetyl‑CoA synthetase |
| * | * | ÷ | NC_002947 | 5164452 | 5164591 | 140 | 2 [1] | [1] 6 | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase |
| * | * | ÷ | NC_002947 | 5175208 | 5175217 | 10 | 2 [1] | [0] 2 | fadD‑I/fadD‑II | long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase |
| * | * | ÷ | NC_002947 | 5194735 | 5194754 | 20 | 2 [1] | [1] 2 | PP_4572/PP_4573 | hypothetical protein/AAA family ATPase |
| * | * | ÷ | NC_002947 | 5201579 | 5201663 | 85 | 2 [1] | [1] 2 | [PP_4579] | [PP_4579] |
| * | * | ÷ | NC_002947 | 5203571 | 5203621 | 51 | 2 [1] | [1] 2 | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| * | * | ÷ | NC_002947 | 5346440 | 5346502 | 63 | 2 [1] | [1] 2 | pgi‑II/acsA‑II | glucose 6‑phosphate isomerase/acetyl‑CoA synthetase |
| * | * | ÷ | NC_002947 | 5384425 | 5384437 | 13 | 2 [1] | [0] 3 | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| * | * | ÷ | NC_002947 | 5403473 | 5403483 | 11 | 2 [0] | [1] 2 | PP_4743/PP_4745 | hypothetical protein/transposase |
| * | * | ÷ | NC_002947 | 5441270 | 5441340 | 71 | 2 [0] | [1] 2 | [rluE]–[amn] | [rluE],[amn] |
| * | * | ÷ | NC_002947 | 5479112 | 5479171 | 60 | 2 [1] | [1] 2 | [PP_4814] | [PP_4814] |
| * | * | ÷ | NC_002947 | 5493517 | 5493643 | 127 | 2 [1] | [1] 2 | PP_5716 | hypothetical protein |
| * | * | ÷ | NC_002947 | 5508451 | 5508641 | 191 | 2 [1] | [1] 2 | [PP_4839] | [PP_4839] |
| * | * | ÷ | NC_002947 | 5515240 | 5515275 | 36 | 2 [0] | [1] 2 | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
| * | * | ÷ | NC_002947 | 5540550 | 5540606 | 57 | 3 [1] | [1] 2 | [PP_4872] | [PP_4872] |
| * | * | ÷ | NC_002947 | 5559818 | 5559908 | 91 | 2 [1] | [1] 2 | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase |
| * | * | ÷ | NC_002947 | 5596071 | 5596155 | 85 | 3 [1] | [1] 2 | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase |
| * | * | ÷ | NC_002947 | 5673599 | 5673697 | 99 | 3 [0] | [1] 2 | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
| * | * | ÷ | NC_002947 | 5683374 | 5683410 | 37 | 2 [1] | [1] 3 | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| * | * | ÷ | NC_002947 | 5706520 | 5706535 | 16 | 2 [1] | [0] 2 | PP_5006/PP_5007 | TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2 |
| * | * | ÷ | NC_002947 | 5718187 | 5718277 | 91 | 2 [1] | [1] 2 | tatC‑II | Sec‑independent protein translocase protein |
| * | * | ÷ | NC_002947 | 5742439 | 5742466 | 28 | 2 [0] | [0] 2 | hutF/PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
| * | * | ÷ | NC_002947 | 5753688 | 5753721 | 34 | 4 [1] | [0] 2 | thiI/glnA | tRNA sulfurtransferase/glutamine synthetase |
| * | * | ÷ | NC_002947 | 5784400 | 5784510 | 111 | 2 [1] | [1] 2 | kefA | intermediate mechanosensitive channel protein |
| * | * | ÷ | NC_002947 | 5818875 | 5818898 | 24 | 2 [1] | [1] 2 | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| * | * | ÷ | NC_002947 | 5860864 | 5860900 | 37 | 2 [1] | [0] 2 | PP_5134/PP_5135 | hypothetical protein/ABC transporter substrate‑binding protein |
| * | * | ÷ | NC_002947 | 5899706 | 5899776 | 71 | 2 [1] | [1] 7 | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| * | * | ÷ | NC_002947 | 5905105 | 5905173 | 69 | 2 [1] | [1] 2 | PP_5175/PP_5176 | HlyD family secretion protein/hypothetical protein |
| * | * | ÷ | NC_002947 | 5916191 | 5916244 | 54 | 2 [0] | [1] 2 | [argA] | [argA] |
| * | * | ÷ | NC_002947 | 5986391 | 5986426 | 36 | 2 [1] | [0] 2 | PP_5242/ycaC‑II | GAF domain‑containing sensor histidine kinase/putative hydrolase |
| * | * | ÷ | NC_002947 | 5999155 | 5999175 | 21 | 2 [0] | [1] 2 | PP_5252/PP_5253 | hypothetical protein/arylesterase |
| * | * | ÷ | NC_002947 | 6011113 | 6011131 | 19 | 2 [1] | [1] 2 | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| * | * | ÷ | NC_002947 | 6029882 | 6029897 | 16 | 2 [0] | [1] 2 | PP_5277/kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
| * | * | ÷ | NC_002947 | 6082968 | 6083011 | 44 | 2 [1] | [0] 2 | [PP_5333] | [PP_5333] |
| * | * | ÷ | NC_002947 | 6091856 | 6091933 | 78 | 3 [1] | [1] 3 | [potF‑IV] | [potF‑IV] |
| * | * | ÷ | NC_002947 | 6130009 | 6130055 | 47 | 2 [1] | [1] 3 | PP_5375/PP_5376 | LysR family transcriptional regulator/hypothetical protein |
| * | * | ÷ | NC_002947 | 6161327 | 6161583 | 257 | 2 [1] | [1] 2 | [PP_5402] | [PP_5402] |
| * | * | ÷ | NC_002947 | 6162562 | 6162631 | 70 | 2 [1] | [1] 2 | PP_5740 | hypothetical protein |
| * | * | ÷ | NC_002947 | 6163209 | 6163689 | 481 | 2 [1] | [0] 2 | PP_5741–[PP_5403] | PP_5741,[PP_5403] |
| * | * | ÷ | NC_002947 | 6163961 | 6163972 | 12 | 2 [0] | [0] 2 | PP_5404 | TnsC‑like transposition protein |
| * | * | ÷ | NC_002947 | 6164480 | 6164694 | 215 | 2 [1] | [1] 2 | PP_5404 | TnsC‑like transposition protein |
| * | * | ÷ | NC_002947 | 6166291 | 6166493 | 203 | 2 [1] | [1] 2 | PP_5405 | transposase |
| * | * | ÷ | NC_002947 | 6167007 | 6167050 | 44 | 3 [1] | [0] 2 | PP_5405 | transposase |
| * | * | ÷ | NC_002947 | 6170307 | 6170473 | 167 | 2 [1] | [1] 2 | PP_5407 | TnsD‑like transposition protein |
| * | * | ÷ | NC_002947 | 6183852 | 6183858 | 7 | 11 [0] | [0] NA | atpI/– | ATP synthase protein I/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1 = | 0 (0.000) | 11 (0.840) | 8/244 | NT | 100% | intergenic (–/+146) | –/parB | –/chromosome‑partitioning protein |
| ? | NC_002947 | = 6183851 | 0 (0.000) | intergenic (‑3/–) | atpI/– | ATP synthase protein I/– | |||||