breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp [crl] [crl]
RA 264,098 G→T L50L (CTC→CTA)  ykfH ← uncharacterized protein
RA 612,648 G→T intergenic (‑154/‑89) fepA ← / → fes ferrienterobactin outer membrane transporter/enterobactin/ferrienterobactin esterase
RA 904,638 G→T E16* (GAA→TAA)  ybjQ → UPF0145 family protein
RA 1,196,220 C→T H366H (CAC→CAT)  icd → isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase
RA 1,196,232 C→T T370T (ACC→ACT)  icd → isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase
MC JC 1,299,499 Δ1,199 bp intergenic (+254/‑485) ychE → / → oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
MC JC 1,978,503 Δ776 bp insB1–insA insB1, insA
RA 2,173,363 Δ2 bp intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,679,525 G→T A1074D (GCT→GAT)  yphG ← DUF4380 domain‑containing TPR repeat protein
RA 2,810,956 A→C T63P (ACG→CCG)  mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 3,413,571 T→C intergenic (‑106/‑293) acrS ← / → acrE acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein
RA 3,560,455 +G intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 4,277,878 A→G D137G (GAC→GGC)  soxR → redox‑sensitive transcriptional activator of soxS; autorepressor

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 682859 682892 34 3 [2] [2] 3 hscC Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
* * ÷ NC_000913 1196261 1196540 280 3 [1] [2] 3 [icd] [icd]
* * ÷ NC_000913 1196704 1196758 55 3 [2] [2] 5 icd/ymfD isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
* * ÷ NC_000913 1196827 1197045 219 5 [2] [2] 3 [ymfD] [ymfD]
* * ÷ NC_000913 1197104 1197458 355 3 [1] [2] 4 ymfD e14 prophage; putative SAM‑dependent methyltransferase
* * ÷ NC_000913 1197526 1197848 323 3 [1] [2] 3 [ymfD]–[ymfE] [ymfD],[ymfE]
* * ÷ NC_000913 1198035 1198610 576 3 [2] [2] 3 [ymfE] [ymfE]
* * ÷ NC_000913 1198660 1198749 90 7 [2] [2] 3 [lit] [lit]
* * ÷ NC_000913 1198818 1199232 415 3 [2] [2] 3 lit T4 phage exclusion protein; cell death peptidase, e14 prophage
* * ÷ NC_000913 1199301 1199400 100 3 [2] [2] 3 lit T4 phage exclusion protein; cell death peptidase, e14 prophage
* * ÷ NC_000913 1199844 1200325 482 3 [2] [2] 3 intE e14 prophage; putative integrase
* * ÷ NC_000913 1200351 1201589 1239 3 [2] [2] 3 [intE]–[ymfI] [intE],xisE,[ymfI]
* * ÷ NC_000913 1201601 1201927 327 3 [2] [2] 3 [ymfI]–[ymfJ] [ymfI],[ymfJ]
* * ÷ NC_000913 1201957 1202382 426 3 [2] [2] 3 [ymfJ]–[cohE] [ymfJ],[cohE]
* * ÷ NC_000913 1202473 1202667 195 3 [2] [2] 3 cohE e14 prophage; repressor protein phage e14
* * ÷ NC_000913 1202736 1202953 218 4 [1] [2] 3 [cohE] [cohE]
* * ÷ NC_000913 1203163 1203525 363 3 [1] [2] 3 [croE]–[ymfL] [croE],[ymfL]
* * ÷ NC_000913 1203594 1204977 1384 3 [2] [2] 4 [ymfL]–[aaaE] [ymfL],ymfM,oweE,[aaaE]
* * ÷ NC_000913 1205221 1205370 150 3 [2] [1] 3 aaaE pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related
* * ÷ NC_000913 1205439 1206010 572 4 [2] [2] 3 [aaaE]–[beeE] [aaaE],ymfR,[beeE]
* * ÷ NC_000913 1206030 1206760 731 3 [2] [2] 3 [beeE]–[jayE] [beeE],[jayE]
* * ÷ NC_000913 1206784 1207468 685 3 [1] [1] 3 [jayE]–[ymfQ] [jayE],[ymfQ]
* * ÷ NC_000913 1207505 1207534 30 3 [2] [2] 3 stfP e14 prophage; uncharacterized protein
* * ÷ NC_000913 1207582–1207631 1208082 452–501 3 [2] [1] 3 stfP e14 prophage; uncharacterized protein
* * ÷ NC_000913 1208158 1208747 590 3 [2] [2] 3 [tfaP]–[tfaE] [tfaP],[tfaE]
* * ÷ NC_000913 1208796 1209910 1115 3 [2] [2] 3 [tfaE]–[pinE] [tfaE],stfE,[pinE]
* * ÷ NC_000913 1210232 1210921 690 3 [2] [2] 3 [pinE]–[mcrA] [pinE],[mcrA]
* * ÷ NC_000913 1211023 1211355 333 3 [2] [2] 3 [mcrA] [mcrA]
* * ÷ NC_000913 1515007 1515047 41 3 [2] [2] 3 ydcV putative ABC transporter permease
* * ÷ NC_000913 3423724–3424234 3424589–3424238 5–866 3 [2] [2] 3 [rrfD]–[rrlD] [rrfD],[rrlD]
* * ÷ NC_000913 3875509 3875533 25 3 [1] [2] 6 yidX putative lipoprotein