Fri Jun 15 17:42:22 2018

breseq -p -j 3 --polymorphism-frequency-cutoff 0.025 -r CP009273_1.gb -o A9_F044_R2_F34_I0 A9_F044_R2_F34_I0_S2191_L001_R2_001.good.fq.gz A9_F044_R2_F34_I0_S2191_L001_R1_001.good.fq.gz