mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 3,045 | T→A | 6.8% | V82E (GTG→GAG) | thrB → | homoserine kinase |
| RA | 139,295 | T→C | 6.2% | Q644R (CAG→CGG) | gcd ← | glucose dehydrogenase |
| RA | 159,811 | C→T | 5.6% | W101* (TGG→TAG) | gluQ ← | glutamyl‑Q tRNA(Asp) synthetase |
| RA | 168,066 | A→T | 76.7% | K195* (AAA→TAA) | fhuA → | ferrichrome outer membrane transporter |
| JC | 168,350 | Δ4 bp | 11.8% | coding (867‑870/2244 nt) | fhuA → | ferrichrome outer membrane transporter |
| RA | 178,535 | A→T | 7.0% | F207I (TTC→ATC) | mtn ← | 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase |
| RA | 210,634 | A→G | 5.3% | K319R (AAA→AGA) | ldcC → | lysine decarboxylase 2, constitutive |
| RA | 247,885 | A→G | 5.7% | Q83Q (CAA→CAG) | rayT → | RAYT REP element‑mobilizing transposase; TnpA(REP) |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 276,186 | G→A | 5.9% | A288T (GCT→ACT) | mmuP → | CP4‑6 prophage; putative S‑methylmethionine transporter |
| RA | 423,295 | G→T | 5.3% | D260Y (GAC→TAC) | malZ → | maltodextrin glucosidase |
| RA | 431,317 | T→A | 7.3% | N233Y (AAT→TAT) | tsx ← | nucleoside channel, receptor of phage T6 and colicin K |
| RA | 437,513 | Δ1 bp | 6.7% | coding (623/975 nt) | yajO ← | 2‑carboxybenzaldehyde reductase |
| RA | 441,772 | A→G | 6.1% | H75R (CAT→CGT) | thiI → | tRNA s(4)U8 sulfurtransferase |
| RA | 464,113 | C→T | 5.2% | G59G (GGC→GGT) | ybaV → | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein |
| RA | 560,665 | G→A | 7.0% | L323L (TTG→TTA) | sfmD → | putative outer membrane export usher protein |
| RA | 604,258 | G→A | 5.0% | P136S (CCG→TCG) | ybdG ← | mechanosensitive channel protein, miniconductance |
| RA | 634,791 | A→T | 7.0% | L196M (TTG→ATG) | ybdM ← | Spo0J family protein, ParB‑like nuclease domain |
| RA | 657,291 | G→A | 5.3% | intergenic (+174/‑1) | pagP → / → cspE | phospholipid:lipid A palmitoyltransferase/constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
| RA | 669,362 | A→G | 7.3% | D182D (GAT→GAC) | cobC ← | putative alpha‑ribazole‑5'‑P phosphatase |
| RA | 672,927 | T→C | 6.3% | K619K (AAA→AAG) | leuS ← | leucyl‑tRNA synthetase |
| RA | 702,544 | C→A | 9.5% | D70Y (GAC→TAC) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 726,233 | G→A | 5.3% | G268G (GGC→GGT) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 754,103 | G→T | 15.7% | F122L (TTC→TTA) | gltA ← | citrate synthase |
| RA | 768,922 | G→A | 7.4% | T315T (ACG→ACA) | mngB → | alpha‑mannosidase |
| RA | 836,040 | C→T | 5.7% | L265L (CTG→TTG) | ybiB → | putative family 3 glycosyltransferase |
| RA | 877,298 | G→A | 7.0% | D246D (GAC→GAT) | rimO ← | ribosomal protein S12 methylthiotransferase |
| RA | 886,972 | G→A | 25.8% | A123V (GCG→GTG) | ybjJ ← | putative drug efflux MFS transporter, inner membrane protein |
| RA | 897,503 | G→A | 6.3% | M140I (ATG→ATA) | potI → | putrescine ABC transporter permease |
| RA | 909,353 | G→A | 31.7% | A566V (GCG→GTG) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| RA | 909,422 | G→A | 41.8% | A543V (GCC→GTC) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| JC JC | 911,086 | IS2 (–) +5 bp | 81.0% | intergenic (‑37/+92) | poxB ← / ← hcr | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent |
| RA | 911,782 | G→A | 27.9% | V123V (GTC→GTT) | hcr ← | HCP oxidoreductase, NADH‑dependent |
| RA | 912,638 | G→A | 6.1% | R393C (CGT→TGT) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases |
| JC JC | 973,271 | IS5 (+) +4 bp | 40.3% | coding (128‑131/780 nt) | elyC ← | envelope biogenesis factor; DUF218 superfamily protein |
| RA | 973,326 | C→G | 33.3% | G26R (GGC→CGC) | elyC ← | envelope biogenesis factor; DUF218 superfamily protein |
| RA | 985,894 | Δ1 bp | 5.5% | coding (1089/1089 nt) | ompF ← | outer membrane porin 1a (Ia;b;F) |
| RA | 996,051 | C→T | 6.7% | V298V (GTG→GTA) | ssuA ← | aliphatic sulfonate ABC transporter periplasmic binding protein |
| RA | 1,019,927 | C→T | 6.3% | G43S (GGT→AGT) | ompA ← | outer membrane protein A (3a;II*;G;d) |
| RA | 1,062,064 | C→T | 5.1% | A89V (GCG→GTG) | torD → | TorA‑maturation chaperone |
| RA | 1,076,349 | T→A | 5.9% | D845V (GAT→GTT) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,089,035 | C→T | 6.2% | E275K (GAA→AAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,099,421 | T→C | 10.5% | R181R (CGT→CGC) | ycdX → | alkaline phosphatase |
| RA | 1,133,145 | G→A | 6.2% | G191D (GGT→GAT) | flgE → | flagellar hook protein |
| RA | 1,159,109 | A→G | 100% | N414S (AAC→AGC) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,196,220 | C→T | 8.8% | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,232 | C→T | 7.5% | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,245 | T→C | 6.2% | L375L (TTA→CTA) ‡ | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,247 | A→G | 6.1% | L375L (TTA→TTG) ‡ | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,231,864 | C→T | 5.9% | R227C (CGT→TGT) | umuC → | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| RA | 1,247,651 | G→T | 7.8% | intergenic (‑275/+45) | treA ← / ← dhaM | periplasmic trehalase/putative dihydroxyacetone‑specific PTS enzymes: HPr, EI components |
| RA | 1,268,313 | T→C | 9.2% | I50T (ATC→ACC) | kdsA → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
| RA | 1,287,161 | G→A | 5.6% | noncoding (76/171 nt) Q6* (CAA→TAA) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,291,030 | A→T | 12.2% | L263L (CTA→CTT) | rssB → | PcnB‑degradosome interaction factor; response regulator |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,409,013 | C→A | 7.2% | H322N (CAT→AAT) | ydaN → | putative Zn(II) transporter |
| RA | 1,480,199 | Δ1 bp | 6.2% | coding (1062/1758 nt) | ynbC → | putative esterase |
| RA | 1,486,160 | G→A | 5.6% | G1034S (GGC→AGC) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,505,552 | C→T | 7.5% | G177R (GGG→AGG) | ydcO ← | BenE family inner membrane putative transporter |
| RA | 1,551,361 | G→A | 8.5% | V8V (GTG→GTA) | fdnI → | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible |
| RA | 1,554,103 | C→T | 12.1% | A523T (GCG→ACG) | maeA ← | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme |
| RA | 1,557,956 | T→C | 7.8% | H28R (CAT→CGT) | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,627,440 | C→A | 8.2% | intergenic (‑60/‑77) | dcp ← / → ydfG | dipeptidyl carboxypeptidase II/NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase |
| RA | 1,654,172 | T→A | 8.2% | M324L (ATG→TTG) | rspA ← | bifunctional D‑altronate/D‑mannonate dehydratase |
| RA | 1,659,640 | G→A | 5.5% | E524E (GAG→GAA) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,771,316 | T→A | 13.0% | Y82* (TAT→TAA) | ydiM → | putative MFS transporter, membrane protein |
| RA | 1,801,156 | T→C | 9.3% | D472G (GAC→GGC) | thrS ← | threonyl‑tRNA synthetase |
| RA | 1,805,527 | T→A | 9.5% | D186V (GAC→GTC) | ydiY ← | acid‑inducible putative outer membrane protein |
| RA | 1,912,311 | G→A | 7.6% | A89V (GCG→GTG) | htpX ← | putative endopeptidase |
| RA | 1,943,153 | Δ1 bp | 8.5% | coding (492/756 nt) | znuC → | zinc ABC transporter ATPase |
| RA | 1,948,237 | G→A | 6.3% | L132L (CTC→CTT) | nudB ← | dihydroneopterin triphosphate pyrophosphatase |
| RA | 1,966,576 | A→G | 6.6% | D154D (GAT→GAC) | cheZ ← | chemotaxis regulator, protein phosphatase for CheY |
| RA | 1,973,431 | C→T | 7.4% | A632T (GCA→ACA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,981,890 | G→A | 8.5% | V166V (GTC→GTT) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
| RA | 2,058,503 | A→T | 9.8% | A396A (GCT→GCA) | yeeO ← | putative multdrug exporter, MATE family |
| RA | 2,130,405 | A→T | 5.5% | Y158* (TAT→TAA) | wcaD ← | putative colanic acid polymerase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,135,369 | C→T | 5.1% | R95H (CGT→CAT) | wzc ← | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,202,309 | T→C | 6.4% | S677S (AGT→AGC) | yehI → | DUF4132 domain‑containing protein |
| RA | 2,204,963 | G→A | 6.6% | W123* (TGG→TAG) | yehL → | putative hexameric AAA+ MoxR family ATPase |
| RA | 2,299,611 | T→C | 7.0% | H217R (CAC→CGC) | napG ← | ferredoxin‑type protein |
| RA | 2,309,687 | A→G | 6.5% | L240P (CTG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| RA | 2,325,966 | C→T | 6.3% | A404V (GCG→GTG) | atoE → | short chain fatty acid transporter |
| RA | 2,364,102 | Δ1 bp | 6.9% | coding (174/543 nt) | yfaZ ← | outer membrane protein, putative porin |
| RA | 2,364,103 | Δ1 bp | 6.9% | coding (173/543 nt) | yfaZ ← | outer membrane protein, putative porin |
| RA | 2,366,090 | A→G | 5.0% | S55G (AGT→GGT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,377,149 | A→G | 6.9% | Y148Y (TAT→TAC) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| RA | 2,416,239 | C→A | 11.1% | T498K (ACG→AAG) | pta → | phosphate acetyltransferase |
| RA | 2,420,218 | G→A | 6.3% | R90C (CGT→TGT) | yfcF ← | glutathione S‑transferase |
| RA | 2,436,760 | C→T | 5.4% | L364L (TTG→TTA) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,627,039 | G→A | 7.0% | Q634* (CAG→TAG) | yfgF ← | cyclic‑di‑GMP phosphodiesterase, anaerobic |
| RA | 2,642,778 | G→A | 5.5% | R23C (CGC→TGC) | rodZ ← | MreB assembly cytoskeletal protein |
| RA | 2,687,166 | C→T | 5.3% | A81A (GCG→GCA) | glnB ← | regulatory protein P‑II for glutamine synthetase |
| RA | 2,837,236 | G→A | 5.5% | H64Y (CAC→TAC) | hypF ← | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein |
| RA | 2,901,085 | A→G | 7.4% | D165G (GAT→GGT) | yqcE → | putative MFS transporter, inner membrane protein |
| RA | 2,955,071 | C→A | 7.7% | E311D (GAG→GAT) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,967,035 | A→G | 5.7% | F467S (TTC→TCC) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 2,983,820 | T→C | 6.0% | D102G (GAC→GGC) | kduI ← | hexuronate isomerase |
| RA | 3,034,140 | C→A | 7.7% | L345L (CTG→CTT) | lysS ← | lysine tRNA synthetase, constitutive |
| RA | 3,070,600 | C→T | 6.0% | P215P (CCG→CCA) | fbaA ← | fructose‑bisphosphate aldolase, class II |
| RA | 3,157,563 | T→C | 5.3% | intergenic (+113/‑87) | dkgA → / → yqhG | 2,5‑diketo‑D‑gluconate reductase A/DUF3828 family putative periplasmic protein |
| RA | 3,262,918 | A→T | 8.5% | V248D (GTC→GAC) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,299,107 | G→A | 6.9% | G45D (GGC→GAC) | yhbO → | stress‑resistance protein |
| RA | 3,341,395 | A→T | 6.1% | K44* (AAG→TAG) | kdsD → | D‑arabinose 5‑phosphate isomerase |
| RA | 3,356,571 | G→A | 5.1% | R616Q (CGG→CAG) | gltB → | glutamate synthase, large subunit |
| RA | 3,386,712 | A→T | 6.7% | C493S (TGT→AGT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,390,707 | A→G | 5.1% | V441A (GTT→GCT) | tldD ← | putative peptidase |
| RA | 3,432,809 | Δ1 bp | 6.6% | coding (752/1125 nt) | smf ← | DNA recombination‑mediator A family protein |
| RA | 3,517,571 | C→T | 5.3% | G306R (GGG→AGG) | aroB ← | 3‑dehydroquinate synthase |
| RA | 3,555,741 | C→A | 5.6% | A886E (GCG→GAG) | malT → | mal regulon transcriptional activator |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,665,229 | T→A | 5.5% | R194S (AGA→AGT) | gadX ← | acid resistance regulon transcriptional activator; autoactivator |
| RA | 3,673,113 | G→A | 5.1% | A234T (GCC→ACC) | yhjC → | LysR family putative transcriptional regulator |
| RA | 3,684,506 | Δ1 bp | 5.5% | coding (1113/1989 nt) | yhjK ← | cyclic‑di‑GMP phosphodiesterase |
| RA | 3,799,134 | G→T | 100% | S60* (TCG→TAG) | waaU ← | lipopolysaccharide core biosynthesis |
| RA | 3,799,671 | C→T | 5.5% | A176T (GCA→ACA) | waaZ ← | lipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein |
| RA | 3,806,430 | C→A | 9.1% | R213L (CGC→CTC) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,973,744 | T→A | 5.4% | I46N (ATC→AAC) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
| RA | 3,990,715 | A→G | 6.2% | W18R (TGG→CGG) | hemC ← | hydroxymethylbilane synthase |
| MC JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,138,729 | G→A | 5.5% | L103L (CTG→TTG) | gldA ← | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,138,730 | T→A | 5.6% | A102A (GCA→GCT) | gldA ← | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,138,733 | T→A | 6.5% | K101N (AAA→AAT) | gldA ← | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,277,877 | G→A | 5.5% | D137N (GAC→AAC) | soxR → | redox‑sensitive transcriptional activator of soxS; autorepressor |
| RA | 4,284,655 | T→A | 30.9% | Y83F (TAT→TTT) | actP ← | acetate transporter |
| RA | 4,287,423:1 | +T | 12.5% | intergenic (‑52/‑341) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,287,423:2 | +A | 12.5% | intergenic (‑52/‑341) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,296,060 | C→T | 25.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,332,690 | Δ1 bp | 5.2% | coding (583/1092 nt) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,343,669 | G→T | 7.1% | E101* (GAA→TAA) | melB → | melibiose:sodium symporter |
| RA | 4,344,201 | C→G | 6.2% | A278G (GCT→GGT) | melB → | melibiose:sodium symporter |
| RA | 4,354,100 | T→A | 6.1% | V206V (GTA→GTT) | lysU ← | lysine tRNA synthetase, inducible |
| RA | 4,394,935 | C→T | 5.2% | R290R (CGC→CGT) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,421,878 | T→C | 5.5% | Y57Y (TAT→TAC) | ulaC → | L‑ascorbate‑specific enzyme IIA component of PTS |
| RA | 4,537,406 | A→G | 8.1% | I63I (ATT→ATC) | nanS ← | 9‑O‑acetyl N‑acetylneuraminic acid esterase |
| RA | 4,557,024 | C→A | 5.8% | P11H (CCT→CAT) | iraD → | RpoS stabilzer after DNA damage, anti‑RssB factor |
| RA | 4,606,239 | A→G | 13.8% | noncoding (48/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,608,400 | T→C | 5.3% | D72D (GAT→GAC) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 123061 | 127548 | 4488 | 27 [7] | [18] 22 | [aceE]–[aceF] | [aceE],[aceF] |
| * | * | ÷ | NC_000913 | 2066284–2066586 | 2066586 | 1–303 | 20 [18] | [19] 20 | [insH1] | [insH1] |
| * | * | ÷ | NC_000913 | 3423752–3424234 | 3424526–3424238 | 5–775 | 21 [17] | [18] 20 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 37993 | 75 (1.080) | 4 (0.060) | 4/244 | NT | 5.2% | coding (1123/1218 nt) | caiB | crotonobetainyl CoA:carnitine CoA transferase |
| ? | NC_000913 | = 38000 | 75 (1.130) | coding (1116/1218 nt) | caiB | crotonobetainyl CoA:carnitine CoA transferase | |||||
| * | ? | NC_000913 | 377433 = | 50 (0.720) | 10 (0.150) | 5/252 | NT | 15.7% | noncoding (99/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 4296058 | 58 (0.840) | noncoding (224/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 1207790 = | 17 (0.250) | 59 (0.970) | 43/222 | NT | 77.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 19 (0.310) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 16 (0.230) | 25 (0.410) | 20/222 | NT | 60.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 19 (0.310) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4138728 | 54 (0.780) | 4 (0.060) | 4/244 | NT | 7.0% | coding (308/1104 nt) | gldA | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| ? | NC_000913 | = 4138734 | 55 (0.830) | coding (302/1104 nt) | gldA | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | NC_000913 | 4295966 = | 38 (0.550) | 9 (0.130) | 6/254 | NT | 15.0% | noncoding (132/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4326320 = | 64 (0.920) | noncoding (519/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4542682 = | 27 (0.390) | 81 (1.260) | 58/236 | NT | 79.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 17 (0.260) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 27 (0.390) | 125 (1.940) | 72/236 | NT | 85.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 17 (0.260) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||