Fri Sep 11 11:24:16 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/48 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/Plate-2-BOP-1000-ACNB-ALE-2-flask-20_S20_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-1000-ACNB-ALE-2-flask-20_S20_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-1000-ACNB-ALE-2-flask-20_S20_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-1000-ACNB-ALE-2-flask-20_S20_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-1000-ACNB-ALE-2-flask-20_S20_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-1000-ACNB-ALE-2-flask-20_S20_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-1000-ACNB-ALE-2-flask-20_S20_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-1000-ACNB-ALE-2-flask-20_S20_L004_R2_001.good.fq.gz