mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 53,272 | T→G | 5.9% | M49L (ATG→CTG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 59,052 | C→T | 6.1% | pseudogene (579/579 nt) pseudogene (1/228 nt) |
yabP → yabP → |
pseudogene, pentapeptide repeats‑containing pseudogene, pentapeptide repeats‑containing |
| RA | 62,377 | A→G | 5.4% | Y296Y (TAT→TAC) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| RA | 151,715 | G→A | 5.3% | R173C (CGC→TGC) | yadL ← | putative fimbrial‑like adhesin protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 466,420 | T→C | 5.4% | E298G (GAG→GGG) | ybaE ← | putative ABC transporter periplasmic binding protein |
| RA | 543,091 | G→C | 5.5% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 5.7% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 584,237 | A→G | 5.0% | D186G (GAT→GGT) | appY → | global transcriptional activator; DLP12 prophage |
| RA | 648,709 | A→T | 5.1% | F288Y (TTC→TAC) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 705,633 | G→T | 5.0% | A564S (GCG→TCG) | nagE → | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components |
| RA | 734,227 | C→T | 5.1% | pseudogene (95/1521 nt) | rhsO → | pseudogene, Rhs family |
| RA | 755,400 | G→A | 100% | W75* (TGG→TAG) | sdhC → | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| RA | 831,042 | G→A | 5.6% | L57L (CTG→CTA) | rhlE → | ATP‑dependent RNA helicase |
| RA | 832,728 | C→T | 5.3% | A75T (GCA→ACA) | ybiA ← | DUF1768 family protein |
| RA | 853,967 | G→A | 5.5% | P107P (CCG→CCA) | ybiR → | putative transporter |
| RA | 872,248 | C→T | 6.2% | T120M (ACG→ATG) | gsiD → | glutathione ABC transporter permease |
| RA | 935,464 | A→G | 11.2% | A747A (GCA→GCG) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 943,269 | G→A | 5.1% | G771S (GGT→AGT) | dmsA → | dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 961,355 | T→G | 5.7% | V52G (GTT→GGT) | cmk → | cytidylate kinase |
| RA | 1,018,388 | G→A | 5.2% | intergenic (‑89/‑97) | ycbZ ← / → matP | putative peptidase/Ter macrodomain organizer matS‑binding protein |
| RA | 1,114,362 | T→C | 6.1% | R377G (AGA→GGA) | mdtG ← | putative drug efflux system protein |
| RA | 1,148,485 | T→C | 5.4% | Y289H (TAT→CAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,169,382 | C→G | 5.3% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,179,260 | G→T | 5.2% | R223M (AGG→ATG) | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,212,074 | T→C | 5.5% | intergenic (‑71/+629) | iraM ← / ← ycgX | RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein |
| RA | 1,221,839 | T→C | 5.1% | pseudogene (2239/2574 nt) | ycgH → | pseudogene; putative ATP‑binding component of a transport system |
| RA | 1,237,971 | A→G | 5.5% | Q134R (CAG→CGG) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,247,144 | T→A | 5.2% | D78V (GAT→GTT) | treA ← | periplasmic trehalase |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,303,000 | T→C | 5.2% | P34P (CCT→CCC) | oppB → | oligopeptide ABC transporter permease |
| RA | 1,320,243 | T→C | 5.0% | N381S (AAC→AGC) | trpD ← | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| JC JC | 1,335,762 | IS5 (–) +4 bp | 100% | intergenic (+304/‑66) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,354,596 | C→T | 6.6% | G292D (GGC→GAC) | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,381,915 | G→T | 5.4% | intergenic (+13/‑32) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,381,918 | A→C | 5.0% | intergenic (+16/‑29) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,393,704 | G→A | 7.5% | A160T (GCA→ACA) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| RA | 1,441,265 | C→T | 6.8% | P70S (CCC→TCC) | ydbJ → | DUF333 family putative lipoprotein |
| RA | 1,478,995 | A→G | 5.4% | K257R (AAA→AGA) | ynbB → | putative CDP‑diglyceride synthase |
| RA | 1,610,455 | G→A | 7.6% | L76L (CTG→TTG) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,626,189 | Δ1 bp | 6.0% | coding (1192/2046 nt) | dcp ← | dipeptidyl carboxypeptidase II |
| RA | 1,653,241 | T→C | 8.6% | K225K (AAA→AAG) | rspB ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,664,972 | T→C | 5.4% | F156S (TTT→TCT) | dmsD → | twin‑argninine leader‑binding protein for DmsA and TorA |
| RA | 1,707,521 | G→A | 5.8% | A201A (GCG→GCA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,714,557 | A→T | 6.2% | T61S (ACT→TCT) | gstA → | glutathionine S‑transferase |
| RA | 1,735,899 | T→C | 7.3% | Y174Y (TAT→TAC) | sodB → | superoxide dismutase, Fe |
| RA | 1,744,445 | C→T | 5.9% | A330V (GCC→GTC) | mdtK → | multidrug efflux system transporter |
| RA | 1,745,627 | C→T | 5.6% | G167G (GGG→GGA) | ydhQ ← | autotransporter adhesin‑related protein |
| RA | 1,760,053 | C→T | 6.2% | L157L (CTG→CTA) | sufS ← | cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP‑dependent |
| RA | 1,775,006 | C→T | 5.2% | S107S (AGC→AGT) | aroD → | 3‑dehydroquinate dehydratase |
| RA | 1,798,472 | A→G | 5.9% | T157T (ACT→ACC) | pheS ← | phenylalanine tRNA synthetase, alpha subunit |
| RA | 1,845,554 | T→C | 6.7% | K469K (AAA→AAG) | topB ← | DNA topoisomerase III |
| RA | 1,863,131 | Δ1 bp | 5.7% | coding (361/996 nt) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase A |
| RA | 1,864,768 | T→C | 6.7% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,870,261 | G→A | 5.8% | intergenic (+23/‑124) | yeaH → / → yeaI | UPF0229 family protein/putative membrane‑anchored diguanylate cyclase |
| RA | 1,903,534 | G→A | 5.3% | V151V (GTG→GTA) | manY → | mannose‑specific enzyme IIC component of PTS |
| RA | 1,959,628 | A→G | 5.3% | N73N (AAT→AAC) | yecM ← | putative metal‑binding enzyme |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,025,992 | T→A | 6.0% | F161Y (TTT→TAT) | yedP → | putative mannosyl‑3‑phosphoglycerate phosphatase |
| RA | 2,072,813 | G→T | 5.9% | L425L (CTG→CTT) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,092,330 | G→A | 6.2% | A412T (GCC→ACC) | hisD → | bifunctional histidinal dehydrogenase/ histidinol dehydrogenase |
| RA | 2,117,903 | Δ1 bp | 5.9% | coding (502/1281 nt) | wcaK ← | colanic acid biosynthesis protein |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,160,408 | G→A | 5.2% | E675K (GAA→AAA) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,219,632 | G→A | 5.2% | intergenic (‑151/+60) | osmF ← / ← bglX | putative ABC transporter periplasmic binding protein/beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,219,633 | C→A | 5.3% | intergenic (‑152/+59) | osmF ← / ← bglX | putative ABC transporter periplasmic binding protein/beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,219,646 | T→G | 6.2% | intergenic (‑165/+46) | osmF ← / ← bglX | putative ABC transporter periplasmic binding protein/beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,219,647 | T→C | 5.3% | intergenic (‑166/+45) | osmF ← / ← bglX | putative ABC transporter periplasmic binding protein/beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,336,597 | T→C | 5.0% | V16V (GTA→GTG) | yfaA ← | DUF2138 family protein, putative host defense protein |
| RA | 2,396,264 | A→C | 5.0% | C63G (TGT→GGT) | nuoI ← | NADH:ubiquinone oxidoreductase, chain I |
| RA | 2,396,553 | Δ1 bp | 5.1% | coding (890/978 nt) | nuoH ← | NADH:ubiquinone oxidoreductase, membrane subunit H |
| RA | 2,460,614 | C→T | 5.2% | intergenic (‑145/+36) | fadI ← / ← yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| RA | 2,545,924 | C→T | 5.3% | A51V (GCG→GTG) | murQ → | N‑acetylmuramic acid 6‑phosphate (MurNAc‑6‑P) etherase |
| RA | 2,586,946 | T→A | 5.5% | S406T (TCC→ACC) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,609,899 | C→T | 5.3% | S471S (AGC→AGT) | hyfG → | hydrogenase 4, subunit |
| RA | 2,762,221 | G→T | 5.1% | I440I (ATC→ATA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,947,466 | T→C | 9.2% | intergenic (+3/‑31) | metZ → / → metW | tRNA‑Met/tRNA‑Met |
| RA | 3,047,524 | C→G | 5.2% | M506I (ATG→ATC) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,084,171 | C→T | 5.0% | D581N (GAT→AAT) | speA ← | biosynthetic arginine decarboxylase, PLP‑binding |
| RA | 3,165,499 | C→T | 6.1% | A159T (GCC→ACC) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,233,809 | G→A | 5.7% | S112S (AGC→AGT) | higA ← | antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,269,967 | C→T | 8.7% | intergenic (+365/+249) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,968 | G→T | 8.6% | intergenic (+366/+248) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,969 | A→C | 9.7% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,970 | A→G | 8.6% | intergenic (+368/+246) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,328,182 | A→T | 5.6% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 5.8% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,381,705 | G→A | 6.2% | P321P (CCG→CCA) | degQ → | serine endoprotease, periplasmic |
| RA | 3,504,875 | T→G | 5.0% | intergenic (+92/+60) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,504,880 | A→T | 5.8% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,504,882 | A→T | 5.1% | intergenic (+99/+53) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,504,887 | C→A | 5.0% | intergenic (+104/+48) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,507,472 | T→C | 5.2% | K77R (AAA→AGA) | yhfU ← | DUF2620 family protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,587,412 | G→T | 5.1% | T234T (ACC→ACA) | ugpQ ← | glycerophosphodiester phosphodiesterase, cytosolic |
| RA | 3,654,551 | T→G | 5.1% | intergenic (+24/‑132) | slp → / → dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport |
| RA | 3,654,552 | T→A | 5.7% | intergenic (+25/‑131) | slp → / → dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport |
| RA | 3,654,553 | C→G | 6.2% | intergenic (+26/‑130) | slp → / → dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport |
| RA | 3,781,051 | C→G | 5.8% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 5.8% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 5.8% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| MC JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,060,261 | G→T | 5.2% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,060 | C→T | 15.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| JC JC | 4,545,942 | IS1 (+) +9 bp | 21.3% | coding (847‑855/2637 nt) | fimD → | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| RA | 4,588,028 | A→G | 5.2% | Y280H (TAC→CAC) | yjiA ← | metal‑binding GTPase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 131578 | 134203 | 2626 | 32 [30] | [31] 35 | [acnB] | [acnB] |
| * | * | ÷ | NC_000913 | 2066246–2066647 | 2066647 | 1–402 | 32 [30] | [31] 32 | [insH1] | [insH1] |
| * | * | ÷ | NC_000913 | 3423721–3424234 | 3424542–3424238 | 5–822 | 32 [31] | [31] 32 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 271133 | NA (NA) | 3 (0.030) | 3/234 | NT | NA | noncoding (593/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 271141 | NA (NA) | noncoding (601/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.050) | 4/226 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 601044 | 56 (0.620) | 3 (0.040) | 3/226 | NT | 5.2% | coding (2331/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | NC_000913 | = 601061 | 57 (0.680) | coding (2348/3144 nt) | cusA | copper/silver efflux system, membrane component | |||||
| * | ? | NC_000913 | = 758508 | NA (NA) | 4 (0.050) | 4/230 | NT | NA | noncoding (100/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 758519 | NA (NA) | noncoding (111/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 1207790 = | 45 (0.500) | 51 (0.650) | 42/212 | NT | 61.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 24 (0.300) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 42 (0.460) | 32 (0.410) | 28/212 | NT | 51.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 24 (0.300) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1839292 = | 81 (0.890) | 4 (0.050) | 4/234 | NT | 5.2% | coding (546/654 nt) | ynjD | putative ABC transporter ATPase |
| ? | NC_000913 | 1839333 = | 68 (0.780) | coding (587/654 nt) | ynjD | putative ABC transporter ATPase | |||||
| * | ? | NC_000913 | 1966969 = | 58 (0.640) | 3 (0.030) | 3/236 | NT | 5.3% | coding (69/645 nt) | cheZ | chemotaxis regulator, protein phosphatase for CheY |
| ? | NC_000913 | 1967014 = | 51 (0.580) | coding (24/645 nt) | cheZ | chemotaxis regulator, protein phosphatase for CheY | |||||
| * | ? | NC_000913 | 2169284 = | 71 (0.780) | 5 (0.060) | 4/228 | NT | 6.9% | coding (573/900 nt) | yegS | phosphatidylglycerol kinase, metal‑dependent |
| ? | NC_000913 | 2169320 = | 69 (0.810) | coding (609/900 nt) | yegS | phosphatidylglycerol kinase, metal‑dependent | |||||
| * | ? | NC_000913 | = 2586939 | 80 (0.880) | 4 (0.050) | 4/238 | NT | 5.0% | coding (1209/1701 nt) | narQ | sensory histidine kinase in two‑component regulatory system with NarP |
| ? | NC_000913 | = 2586950 | 73 (0.820) | coding (1220/1701 nt) | narQ | sensory histidine kinase in two‑component regulatory system with NarP | |||||
| * | ? | NC_000913 | 3269866 = | 102 (1.120) | 4 (0.050) | 4/236 | NT | 5.0% | intergenic (+264/+350) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | 3269959 = | 53 (0.600) | intergenic (+357/+257) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | 3654539 = | 95 (1.050) | 6 (0.070) | 7/220 | NT | 6.4% | intergenic (+12/‑144) | slp/dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport |
| ? | NC_000913 | 3654568 = | 90 (1.100) | intergenic (+41/‑115) | slp/dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport | |||||
| * | ? | NC_000913 | 3754811 = | NA (NA) | 3 (0.040) | 3/228 | NT | NA | intergenic (‑383/+162) | yiaW/aldB | DUF3302 family inner membrane protein/aldehyde dehydrogenase B |
| ? | NC_000913 | 3754851 = | NA (NA) | intergenic (‑423/+122) | yiaW/aldB | DUF3302 family inner membrane protein/aldehyde dehydrogenase B | |||||
| * | ? | NC_000913 | = 4199824 | 77 (0.850) | 4 (0.050) | 4/234 | NT | 5.1% | coding (321/591 nt) | yjaG | DUF416 domain protein |
| ? | NC_000913 | = 4199846 | 74 (0.850) | coding (343/591 nt) | yjaG | DUF416 domain protein | |||||
| * | ? | NC_000913 | = 4542690 | 104 (1.150) | 7 (0.080) | 7/226 | NT | 6.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 125 (1.490) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||