mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 33,060 | G→A | 5.6% | A748A (GCG→GCA) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 37,454 | T→A | 7.5% | Q124L (CAA→CTA) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 59,299 | G→T | 5.1% | intergenic (+20/+388) | yabP → / ← rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| RA | 59,301 | A→C | 5.2% | intergenic (+22/+386) | yabP → / ← rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| RA | 78,830 | T→A | 6.8% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 78,831 | T→A | 6.5% | intergenic (+32/+17) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 87,602 | T→C | 5.1% | V82V (GTT→GTC) | ilvH → | acetolactate synthase 3, small subunit, valine‑sensitive |
| RA | 92,965 | T→C | 5.3% | V518A (GTT→GCT) ‡ | ftsI → | transpeptidase involved in septal peptidoglycan synthesis; penicillin‑binding protein 3 |
| RA | 92,966 | T→A | 5.6% | V518V (GTT→GTA) ‡ | ftsI → | transpeptidase involved in septal peptidoglycan synthesis; penicillin‑binding protein 3 |
| RA | 92,967 | G→A | 5.4% | A519T (GCG→ACG) | ftsI → | transpeptidase involved in septal peptidoglycan synthesis; penicillin‑binding protein 3 |
| RA | 120,154 | Δ1 bp | 5.3% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 5.4% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 151,519 | A→C | 6.4% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 6.5% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 164,620 | C→T | 5.3% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 5.3% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 167,842:1 | +T | 71.1% | coding (359/2244 nt) | fhuA → | ferrichrome outer membrane transporter |
| RA | 168,284 | C→A | 23.2% | Y267* (TAC→TAA) | fhuA → | ferrichrome outer membrane transporter |
| RA | 184,180 | C→A | 5.3% | intergenic (‑85/+77) | yaeH ← / ← yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 289,256 | G→C | 6.2% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 6.2% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 317,566 | G→A | 5.4% | pseudogene (128/129 nt) | ykgQ → | pseudogene, putative dehydrogenase |
| RA | 317,571 | T→C | 5.2% | intergenic (+4/+155) | ykgQ → / ← rclC | pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein |
| RA | 326,474 | T→C | 5.2% | A258A (GCA→GCG) | betA ← | choline dehydrogenase, a flavoprotein |
| RA | 355,892 | G→A | 5.5% | W324* (TGG→TAG) | codB → | cytosine transporter |
| RA | 383,897 | C→T | 5.4% | M13I (ATG→ATA) ‡ | yaiP ← | putative family 2 glycosyltransferase |
| RA | 383,898 | A→G | 5.4% | M13T (ATG→ACG) ‡ | yaiP ← | putative family 2 glycosyltransferase |
| RA | 400,634 | G→A | 5.0% | P97L (CCG→CTG) | ddlA ← | D‑alanine‑D‑alanine ligase A |
| RA | 453,467 | G→A | 5.0% | P27S (CCG→TCG) | ampG ← | muropeptide transporter |
| RA | 454,853 | T→C | 5.9% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 5.9% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 470,313 | C→G | 7.2% | I481M (ATC→ATG) | mdlA → | putative multidrug ABC transporter ATPase |
| RA | 481,225 | T→G | 6.3% | intergenic (‑517/+29) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 481,228 | C→A | 5.3% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 483,206 | G→A | 5.9% | L400F (CTC→TTC) | acrB ← | multidrug efflux system protein |
| RA | 517,379 | C→A | 5.1% | intergenic (+17/+46) | fetB → / ← ybbN | iron export ABC transporter permease; peroxide resistance protein/DnaK co‑chaperone, thioredoxin‑like protein |
| RA | 517,380 | A→T | 5.1% | intergenic (+18/+45) | fetB → / ← ybbN | iron export ABC transporter permease; peroxide resistance protein/DnaK co‑chaperone, thioredoxin‑like protein |
| RA | 517,384 | T→G | 5.1% | intergenic (+22/+41) | fetB → / ← ybbN | iron export ABC transporter permease; peroxide resistance protein/DnaK co‑chaperone, thioredoxin‑like protein |
| RA | 522,634 | G→A | 5.0% | G740D (GGC→GAC) | ybbP → | putative ABC transporter permease |
| RA | 551,678 | T→C | 5.0% | D306G (GAC→GGC) | purK ← | N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 556,640 | T→A | 11.2% | intergenic (‑87/+21) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,641 | G→T | 8.2% | intergenic (‑88/+20) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,642 | A→C | 8.1% | intergenic (‑89/+19) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,643 | T→A | 9.4% | intergenic (‑90/+18) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 717,518 | G→A | 5.8% | P250S (CCA→TCA) | potE ← | putrescine/proton symporter: putrescine/ornithine antiporter |
| RA | 790,928 | C→T | 6.2% | Q34Q (CAG→CAA) ‡ | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 790,929 | T→G | 6.1% | Q34P (CAG→CCG) ‡ | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 790,932 | C→A | 6.3% | W33L (TGG→TTG) ‡ | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 790,933 | A→G | 6.3% | W33R (TGG→CGG) ‡ | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 837,162 | G→A | 5.9% | C271Y (TGC→TAC) | ybiC → | putative dehydrogenase |
| RA | 869,724 | A→C | 5.7% | N105T (AAC→ACC) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 869,735 | G→T | 5.5% | V109L (GTG→TTG) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 909,422 | G→A | 76.6% | A543V (GCC→GTC) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| JC JC | 911,086 | IS2 (–) +5 bp | 68.6% | intergenic (‑37/+92) | poxB ← / ← hcr | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent |
| RA | 911,148 | C→T | 8.5% | intergenic (‑99/+34) | poxB ← / ← hcr | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent |
| RA | 922,314:1 | +C | 5.5% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 940,751 | T→C | 5.3% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 980,167 | A→T | 5.6% | E1281V (GAA→GTA) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 1,018,249 | G→C | 5.7% | S17R (AGC→AGG) ‡ | ycbZ ← | putative peptidase |
| RA | 1,018,251 | T→G | 5.5% | S17R (AGC→CGC) ‡ | ycbZ ← | putative peptidase |
| RA | 1,018,254 | C→A | 5.6% | D16Y (GAT→TAT) | ycbZ ← | putative peptidase |
| RA | 1,018,256 | G→C | 5.6% | T15S (ACC→AGC) | ycbZ ← | putative peptidase |
| RA | 1,153,219 | G→A | 5.4% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,163,979 | G→A | 5.2% | L240L (CTG→CTA) | thiK → | thiamine kinase |
| RA | 1,188,406 | C→T | 13.7% | E457E (GAG→GAA) | phoQ ← | sensory histidine kinase in two‑component regulatory system with PhoP |
| RA | 1,196,220 | C→T | 15.4% | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,232 | C→T | 12.8% | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,245 | T→C | 12.3% | L375L (TTA→CTA) ‡ | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,247 | A→G | 12.2% | L375L (TTA→TTG) ‡ | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,280 | G→A | 5.8% | A386A (GCG→GCA) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,228,183 | C→T | 5.1% | S35S (AGC→AGT) | ycgM → | putative isomerase/hydrolase |
| RA | 1,240,000 | T→C | 7.3% | intergenic (+51/+335) | dadX → / ← cvrA | alanine racemase, catabolic, PLP‑binding/putative cation/proton antiporter |
| RA | 1,271,320 | A→T | 6.3% | I177N (ATT→AAT) | chaA ← | calcium/sodium:proton antiporter |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,335,681 | T→C | 5.1% | intergenic (+223/‑150) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,335,684 | G→A | 5.6% | intergenic (+226/‑147) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,368,966 | C→T | 5.5% | R56C (CGT→TGT) | pspB → | psp operon transcription co‑activator |
| RA | 1,440,441 | T→C | 5.0% | H115R (CAT→CGT) | pfo ← | pyruvate‑flavodoxin oxidoreductase |
| RA | 1,465,671 | C→G | 5.1% | pseudogene (280/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,549,000 | A→T | 5.5% | T534S (ACC→TCC) | fdnG → | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| RA | 1,552,078 | G→A | 5.5% | intergenic (+87/+320) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,079 | C→A | 5.5% | intergenic (+88/+319) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,570,252 | A→T | 6.5% | S80T (TCA→ACA) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,570,610 | G→A | 6.0% | intergenic (‑121/+35) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,611 | G→A | 5.9% | intergenic (‑122/+34) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,612 | T→C | 5.7% | intergenic (‑123/+33) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,613 | T→C | 5.7% | intergenic (‑124/+32) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,571,721 | G→A | 8.0% | H109Y (CAT→TAT) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
| RA | 1,698,585 | T→G | 6.1% | E199A (GAA→GCA) | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,698,587 | T→A | 6.2% | A198A (GCA→GCT) ‡ | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,698,589 | C→A | 6.3% | A198S (GCA→TCA) ‡ | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,708,805 | T→A | 19.7% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,743,598 | G→A | 5.3% | A48T (GCT→ACT) | mdtK → | multidrug efflux system transporter |
| RA | 1,789,497 | T→G | 5.8% | intergenic (+16/‑116) | aroH → / → ydiE | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog |
| RA | 1,789,498 | G→T | 6.2% | intergenic (+17/‑115) | aroH → / → ydiE | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog |
| RA | 1,789,499 | A→C | 6.4% | intergenic (+18/‑114) | aroH → / → ydiE | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog |
| RA | 1,789,500 | C→A | 5.5% | intergenic (+19/‑113) | aroH → / → ydiE | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible/hemin uptake protein HemP homolog |
| RA | 1,796,340 | G→A | 28.3% | S535S (AGC→AGT) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,810,062 | T→C | 9.0% | intergenic (+14/‑149) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,065 | T→G | 9.7% | intergenic (+17/‑146) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,066 | C→A | 8.8% | intergenic (+18/‑145) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,069 | G→A | 9.0% | intergenic (+21/‑142) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,835,576 | G→A | 5.5% | R21H (CGT→CAT) | ynjA → | carboxymuconolactone decarboxylase family protein |
| RA | 1,840,795 | G→A | 8.3% | L203L (CTC→CTT) | ynjF ← | CDP‑alcohol phosphatidyltransferase family inner membrane protein |
| RA | 1,840,798 | C→T | 10.5% | S202S (TCG→TCA) ‡ | ynjF ← | CDP‑alcohol phosphatidyltransferase family inner membrane protein |
| RA | 1,840,799 | G→C | 8.8% | S202W (TCG→TGG) ‡ | ynjF ← | CDP‑alcohol phosphatidyltransferase family inner membrane protein |
| RA | 1,840,800 | A→G | 8.9% | S202P (TCG→CCG) ‡ | ynjF ← | CDP‑alcohol phosphatidyltransferase family inner membrane protein |
| RA | 1,840,803 | T→C | 9.1% | K201E (AAG→GAG) | ynjF ← | CDP‑alcohol phosphatidyltransferase family inner membrane protein |
| RA | 1,849,031 | T→C | 5.6% | G65G (GGT→GGC) | sppA → | protease IV (signal peptide peptidase) |
| RA | 1,916,621 | T→C | 5.1% | F122L (TTT→CTT) | yebS → | inner membrane PqiA domain protein |
| RA | 1,919,474 | T→C | 5.3% | Y655Y (TAT→TAC) | yebT → | MCE domain protein |
| RA | 1,926,882 | C→A | 7.4% | G653V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,926,894 | T→G | 6.2% | D649A (GAC→GCC) | ptrB ← | protease II |
| RA | 1,936,091 | T→C | 5.3% | D75G (GAT→GGT) | zwf ← | glucose‑6‑phosphate 1‑dehydrogenase |
| RA | 1,959,047 | C→T | 6.0% | A74T (GCC→ACC) | cutC ← | copper homeostasis protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,981,762 | A→C | 5.1% | V209G (GTT→GGT) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
| RA | 1,987,857 | C→T | 6.6% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,858 | G→C | 7.5% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,859 | G→C | 6.7% | intergenic (‑101/+14) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,860 | A→G | 6.7% | intergenic (‑102/+13) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 2,008,719 | C→G | 5.9% | A148G (GCC→GGC) | yedE → | UPF0394 family sulphur transport domain‑containing inner membrane protein |
| RA | 2,045,401 | A→G | 5.2% | D155G (GAT→GGT) | yeeJ → | putative adhesin |
| RA | 2,066,248 | C→T | 8.0% | intergenic (‑94/+57) | yeeH ← / ← insH1 | pseudogene/IS5 transposase and trans‑activator |
| RA | 2,079,004 | G→C | 6.1% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,120,198 | T→C | 5.2% | T453A (ACG→GCG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| RA | 2,139,898 | A→G | 5.2% | L572P (CTC→CCC) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,216,157 | A→C | 5.2% | V107G (GTT→GGT) | yehW ← | putative ABC transporter permease |
| RA | 2,217,066 | G→A | 5.5% | I114I (ATC→ATT) | yehX ← | putative ABC transporter ATPase |
| RA | 2,236,657 | G→A | 7.0% | intergenic (+157/+86) | preA → / ← mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| RA | 2,236,658 | C→A | 7.0% | intergenic (+158/+85) | preA → / ← mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| RA | 2,236,664 | G→T | 6.2% | intergenic (+164/+79) | preA → / ← mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| RA | 2,236,665 | A→C | 6.2% | intergenic (+165/+78) | preA → / ← mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| RA | 2,236,671 | T→G | 5.9% | intergenic (+171/+72) | preA → / ← mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| RA | 2,236,672 | T→C | 6.0% | intergenic (+172/+71) | preA → / ← mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit |
| RA | 2,286,311 | C→G | 8.6% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 8.4% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 8.5% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,305,085 | A→G | 8.0% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 7.9% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 8.0% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,394,036 | G→T | 5.6% | T337T (ACC→ACA) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| RA | 2,411,925 | A→T | 5.3% | F55L (TTT→TTA) ‡ | yfbT ← | sugar phosphatas |
| RA | 2,411,926 | A→T | 5.3% | F55Y (TTT→TAT) ‡ | yfbT ← | sugar phosphatas |
| RA | 2,411,927 | A→T | 5.3% | F55I (TTT→ATT) ‡ | yfbT ← | sugar phosphatas |
| RA | 2,416,375 | G→T | 17.8% | M543I (ATG→ATT) | pta → | phosphate acetyltransferase |
| RA | 2,448,750 | C→T | 11.1% | Q49* (CAG→TAG) | smrB → | putative DNA endonuclease |
| RA | 2,454,260 | G→A | 5.5% | pseudogene (742/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| RA | 2,474,878 | T→C | 5.8% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,521,344 | C→T | 5.7% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,346 | A→T | 5.1% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,348 | A→G | 5.2% | intergenic (+20/+245) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,613,332 | C→T | 5.5% | P478L (CCG→CTG) | hyfR → | hydrogenase‑4 transcriptional activator |
| RA | 2,684,083 | C→T | 8.1% | intergenic (+27/+171) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,084 | G→T | 6.1% | intergenic (+28/+170) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,085 | A→C | 6.1% | intergenic (+29/+169) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,086 | A→G | 6.0% | intergenic (+30/+168) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,707,320 | A→T | 5.6% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 5.6% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,720,413 | C→T | 25.6% | S154L (TCG→TTG) | pka → | protein lysine acetyltransferase |
| JC | 2,720,855 | +GCGCTG | 68.5% | coding (903/2661 nt) | pka → | protein lysine acetyltransferase |
| RA | 2,729,465 | G→A | 9.9% | intergenic (‑21/+151) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,729,466 | T→A | 9.8% | intergenic (‑22/+150) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,729,467 | T→C | 10.0% | intergenic (‑23/+149) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,801,056 | A→T | 7.3% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,866,487 | G→C | 7.1% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 7.2% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,900,322 | C→T | 5.2% | intergenic (‑49/‑270) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,324 | G→T | 6.5% | intergenic (‑51/‑268) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,327 | A→C | 5.4% | intergenic (‑54/‑265) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,906,607 | C→T | 7.4% | intergenic (+24/+36) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,608 | G→C | 7.1% | intergenic (+25/+35) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,609 | G→C | 7.1% | intergenic (+26/+34) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,987,103 | C→T | 5.7% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,104 | T→A | 5.7% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,105 | A→G | 5.5% | intergenic (+29/‑431) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 3,020,510 | G→T | 9.3% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 9.4% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 9.3% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,068,929 | A→C | 6.3% | intergenic (‑121/+18) | argO ← / ← mscS | arginine transporter/mechanosensitive channel protein, small conductance |
| RA | 3,087,890 | C→G | 7.7% | intergenic (+30/‑394) | metK → / → galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| RA | 3,087,891 | T→C | 7.9% | intergenic (+31/‑393) | metK → / → galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| RA | 3,087,892 | C→G | 6.9% | intergenic (+32/‑392) | metK → / → galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| RA | 3,087,893 | G→A | 8.0% | intergenic (+33/‑391) | metK → / → galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| RA | 3,087,894 | C→G | 7.8% | intergenic (+34/‑390) | metK → / → galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| RA | 3,109,464 | C→T | 5.6% | intergenic (‑309/‑89) | speC ← / → yqgA | ornithine decarboxylase, constitutive/DUF554 family putative inner membrane protein |
| RA | 3,169,260 | Δ1 bp | 5.7% | intergenic (‑29/+24) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,169,265:1 | +T | 5.5% | intergenic (‑34/+19) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,206,675 | T→G | 5.0% | C71W (TGT→TGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,269,956 | T→C | 8.4% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,288,032 | C→A | 5.1% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,291,109 | A→T | 5.9% | K766* (AAA→TAA) | yraJ → | putative outer membrane protein |
| RA | 3,313,207 | G→A | 7.9% | intergenic (‑29/+135) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,208 | T→A | 8.1% | intergenic (‑30/+134) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,209 | T→C | 8.1% | intergenic (‑31/+133) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,334,703 | A→G | 6.1% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 6.1% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 6.1% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,368,219 | G→A | 5.0% | T131T (ACG→ACA) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,377,923 | A→G | 5.2% | R95R (CGT→CGC) | rpsI ← | 30S ribosomal subunit protein S9 |
| RA | 3,477,878 | T→A | 6.3% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,488,983 | C→A | 7.6% | V400L (GTG→TTG) | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| RA | 3,488,989 | G→T | 8.2% | H398N (CAC→AAC) | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,755,082 | T→A | 5.4% | Y477F (TAC→TTC) | aldB ← | aldehyde dehydrogenase B |
| RA | 3,768,131 | A→T | 100% | pseudogene (911/945 nt) | rhsJ → | Rhs‑family protein |
| RA | 3,923,717 | G→A | 5.3% | intergenic (‑37/+27) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,718 | G→C | 5.3% | intergenic (‑38/+26) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,719 | G→C | 5.3% | intergenic (‑39/+25) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,720 | T→C | 5.2% | intergenic (‑40/+24) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,959,480 | A→T | 5.1% | intergenic (+35/+52) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,964,929 | C→T | 100% | E234E (GAG→GAA) | rhlB ← | ATP‑dependent RNA helicase |
| RA | 4,035,280 | G→A | 10.6% | intergenic (+127/‑251) | hemG → / → rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| RA | 4,035,287 | C→A | 13.3% | intergenic (+134/‑244) | hemG → / → rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| RA | 4,035,288 | T→G | 13.8% | intergenic (+135/‑243) | hemG → / → rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| RA | 4,094,327 | A→G | 5.4% | intergenic (‑55/+396) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,094,328 | A→C | 5.4% | intergenic (‑56/+395) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,094,334 | T→G | 5.9% | intergenic (‑62/+389) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,094,335 | C→A | 5.5% | intergenic (‑63/+388) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,118,828 | T→G | 6.6% | intergenic (+68/+17) | zapB → / ← rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein |
| RA | 4,118,829 | T→C | 6.5% | intergenic (+69/+16) | zapB → / ← rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein |
| RA | 4,118,830 | G→A | 6.5% | intergenic (+70/+15) | zapB → / ← rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein |
| RA | 4,118,831 | C→A | 7.2% | intergenic (+71/+14) | zapB → / ← rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein |
| RA | 4,183,261 | C→T | 20.0% | H673Y (CAC→TAC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,184,540 | A→C | 50.7% | N1099T (AAC→ACC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,060 | C→T | 30.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,335,654 | T→A | 5.7% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 5.6% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,338,130 | G→C | 6.9% | intergenic (‑201/+124) | adiY ← / ← adiA | adi system transcriptional activator/arginine decarboxylase |
| RA | 4,376,280 | G→A | 5.7% | intergenic (+15/‑37) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,376,291 | T→C | 5.7% | intergenic (+26/‑26) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,560,590 | A→G | 5.2% | F31L (TTT→CTT) | yjiH ← | nucleoside recognition pore and gate family putative inner membrane transporter |
| RA | 4,627,879 | C→T | 6.0% | H189Y (CAT→TAT) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 123049 | 127564 | 4516 | 38 [37] | [37] 38 | [aceE]–[aceF] | [aceE],[aceF] |
| * | * | ÷ | NC_000913 | 3423753–3424234 | 3424614–3424238 | 5–862 | 38 [34] | [37] 39 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3619318–3621083 | 3688673 | 67591–69356 | 38 [34] | [2] 106 | [rhsB]–[bcsC] | [rhsB],yhhH,yrhC,yhhI,yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,[bcsC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 15518 = | NA (NA) | 3 (0.030) | 3/240 | NT | NA | noncoding (132/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 15620 = | NA (NA) | noncoding (234/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 114505 | 84 (0.830) | 6 (0.070) | 6/234 | NT | 7.0% | intergenic (+18/+17) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| ? | NC_000913 | = 114511 | 84 (0.920) | intergenic (+24/+11) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 15 (0.160) | 13/244 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225281 | NA (NA) | 11 (0.110) | 10/248 | NT | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227444 | NA (NA) | 5 (0.050) | 5/248 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 315572 | NA (NA) | 3 (0.030) | 3/238 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 1115624 = | NA (NA) | 5 (0.050) | 5/236 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | NC_000913 | 1115655 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | NC_000913 | = 1123496 | 90 (0.890) | 6 (0.060) | 4/248 | NT | 6.1% | coding (559/648 nt) | grxB | glutaredoxin 2 (Grx2) |
| ? | NC_000913 | = 1123525 | 98 (1.010) | coding (530/648 nt) | grxB | glutaredoxin 2 (Grx2) | |||||
| * | ? | NC_000913 | 1205159 = | 71 (0.710) | 4 (0.040) | 4/238 | NT | 5.6% | pseudogene (756/1134 nt) | aaaE | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| ? | NC_000913 | 1205208 = | 70 (0.750) | pseudogene (805/1134 nt) | aaaE | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 35 (0.350) | 18 (0.200) | 17/226 | NT | 32.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 43 (0.490) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 36 (0.360) | 15 (0.170) | 15/226 | NT | 28.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 43 (0.490) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1681236 | 80 (0.790) | 5 (0.050) | 4/246 | NT | 6.8% | coding (261/723 nt) | folM | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
| ? | NC_000913 | = 1681277 | 61 (0.640) | coding (302/723 nt) | folM | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme | |||||
| * | ? | NC_000913 | 1784702 = | 99 (0.980) | 6 (0.060) | 5/242 | NT | 6.1% | intergenic (+25/+32) | fadK/ppsA | short chain acyl‑CoA synthetase, anaerobic/phosphoenolpyruvate synthase |
| ? | NC_000913 | 1784727 = | 93 (0.980) | intergenic (+50/+7) | fadK/ppsA | short chain acyl‑CoA synthetase, anaerobic/phosphoenolpyruvate synthase | |||||
| * | ? | NC_000913 | 2032326 = | 77 (0.760) | 4 (0.040) | 4/258 | NT | 5.0% | intergenic (‑9/+58) | dcm/yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| ? | NC_000913 | 2032347 = | 75 (0.740) | intergenic (‑30/+37) | dcm/yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase | |||||
| * | ? | NC_000913 | = 2176678 | 64 (0.640) | 4 (0.040) | 4/246 | NT | 5.7% | coding (527/855 nt) | gatY | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit |
| ? | NC_000913 | = 2176710 | 71 (0.740) | coding (495/855 nt) | gatY | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit | |||||
| * | ? | NC_000913 | 2231069 = | 79 (0.780) | 4 (0.040) | 4/244 | NT | 5.2% | coding (51/696 nt) | yohK | LrgB family inner membrane protein |
| ? | NC_000913 | 2231091 = | 70 (0.740) | coding (73/696 nt) | yohK | LrgB family inner membrane protein | |||||
| * | ? | NC_000913 | 2729443 = | 42 (0.420) | 7 (0.080) | 5/238 | NT | 13.2% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168331 | 53 (0.570) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2878074 = | 82 (0.810) | 5 (0.050) | 5/244 | NT | 6.0% | intergenic (+456/+495) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | 2878092 = | 80 (0.840) | intergenic (+474/+477) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913 | = 3068921 | 74 (0.730) | 4 (0.040) | 5/240 | NT | 5.2% | intergenic (‑113/+26) | argO/mscS | arginine transporter/mechanosensitive channel protein, small conductance |
| ? | NC_000913 | = 3068929 | 76 (0.810) | intergenic (‑121/+18) | argO/mscS | arginine transporter/mechanosensitive channel protein, small conductance | |||||
| * | ? | NC_000913 | 3087880 = | NA (NA) | 6 (0.060) | 5/238 | NT | NA | intergenic (+20/‑404) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| ? | NC_000913 | 3087905 = | NA (NA) | intergenic (+45/‑379) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter | |||||
| * | ? | NC_000913 | = 3339379 | 63 (0.630) | 5 (0.050) | 5/242 | NT | 7.4% | coding (687/810 nt) | mlaF | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| ? | NC_000913 | = 3339417 | 66 (0.700) | coding (649/810 nt) | mlaF | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein | |||||
| * | ? | NC_000913 | 3688674 = | 2 (0.020) | 90 (0.900) | 67/256 | NT | 67.7% | coding (500/3474 nt) | bcsC | cellulose synthase subunit |
| ? | NC_000913 | = 4506221 | 84 (0.840) | coding (935/1119 nt) | yjhC | GFO/IDH/MOCA family putative oxidoreductase. NAD(P)‑dependent | |||||