mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 53,376 | G→A | 5.2% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 82,161 | C→A | 7.0% | G457C (GGT→TGT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,213 | T→C | 5.1% | H106R (CAC→CGC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 120,154 | Δ1 bp | 5.3% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 5.6% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 164,557 | G→C | 5.2% | intergenic (+23/‑173) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| JC JC | 167,520 | IS2 (–) +5 bp | 47.3% | coding (37‑41/2244 nt) | fhuA → | ferrichrome outer membrane transporter |
| JC JC | 169,091 | IS2 (–) +5 bp | 55.7% | coding (1608‑1612/2244 nt) | fhuA → | ferrichrome outer membrane transporter |
| RA | 177,405 | G→C | 5.1% | L74V (CTG→GTG) | yadS ← | UPF0126 family inner membrane protein |
| RA | 256,449 | T→C | 6.7% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 8.0% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 8.6% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 259,334 | G→C | 45.5% | P256R (CCA→CGA) | phoE ← | outer membrane phosphoporin protein E |
| RA | 314,255 | T→C | 7.0% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 6.8% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 475,972 | C→G | 5.3% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 605,300 | T→C | 5.3% | N42S (AAC→AGC) | nfsB ← | dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 625,985 | G→A | 6.2% | A367A (GCG→GCA) | entC → | isochorismate synthase 1 |
| RA | 672,145 | T→A | 5.7% | L14F (TTA→TTT) ‡ | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 672,147 | A→T | 5.6% | L14I (TTA→ATA) ‡ | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 681,694 | A→G | 7.1% | intergenic (+31/+29) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,699 | T→A | 7.5% | intergenic (+36/+24) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,700 | T→A | 7.5% | intergenic (+37/+23) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,705 | C→T | 7.5% | intergenic (+42/+18) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 751,117 | T→C | 5.2% | P351P (CCA→CCG) | ybgQ ← | putative outer membrane protein |
| RA | 756,123 | G→C | 8.5% | V73L (GTG→CTG) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 794,939 | T→C | 5.2% | intergenic (+17/‑150) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,942 | G→A | 5.2% | intergenic (+20/‑147) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,943 | T→G | 5.7% | intergenic (+21/‑146) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 850,993 | T→C | 6.2% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 6.3% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 6.3% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 6.4% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 857,576 | T→C | 6.6% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 7.1% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 6.4% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 858,663 | T→C | 5.3% | S133S (TCA→TCG) ‡ | ybiU ← | DUF1479 family protein |
| RA | 858,664 | G→T | 5.3% | S133* (TCA→TAA) ‡ | ybiU ← | DUF1479 family protein |
| RA | 858,665 | A→C | 5.5% | S133A (TCA→GCA) ‡ | ybiU ← | DUF1479 family protein |
| RA | 858,672 | G→T | 5.1% | L130L (CTC→CTA) ‡ | ybiU ← | DUF1479 family protein |
| RA | 858,673 | A→C | 5.1% | L130R (CTC→CGC) ‡ | ybiU ← | DUF1479 family protein |
| RA | 858,674 | G→A | 5.0% | L130F (CTC→TTC) ‡ | ybiU ← | DUF1479 family protein |
| RA | 867,718 | G→C | 5.1% | E67Q (GAA→CAA) | gsiA → | glutathione ABC transporter ATPase |
| RA | 946,028 | G→A | 5.5% | G53D (GGC→GAC) | ycaD → | putative MFS transporter, inner membrane protein |
| RA | 1,006,046 | C→G | 5.0% | S32* (TCA→TGA) | zapC → | FtsZ stabilizer |
| RA | 1,078,235 | A→G | 5.9% | T216T (ACT→ACC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,082,048 | C→A | 5.3% | pseudogene (589/726 nt) | efeU → | ferrous iron permease (pseudogene) |
| RA | 1,136,026 | G→T | 10.5% | V155L (GTA→TTA) ‡ | flgH → | flagellar protein of basal‑body outer‑membrane L ring |
| RA | 1,136,027 | T→A | 10.4% | V155E (GTA→GAA) ‡ | flgH → | flagellar protein of basal‑body outer‑membrane L ring |
| RA | 1,136,028 | A→C | 10.2% | V155V (GTA→GTC) ‡ | flgH → | flagellar protein of basal‑body outer‑membrane L ring |
| RA | 1,159,335 | G→T | 6.4% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 6.7% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,170,282 | C→G | 5.4% | W31C (TGG→TGC) | ldtC ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 1,172,650 | G→A | 7.0% | R439C (CGT→TGT) | mfd ← | transcription‑repair coupling factor |
| RA | 1,174,077 | G→A | 5.5% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 5.5% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,252,708 | A→T | 5.2% | E548V (GAG→GTG) | dhaR → | dhaKLM operon transcription activator |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,317,648 | C→A | 11.2% | E256D (GAG→GAT) | trpB ← | tryptophan synthase, beta subunit |
| RA | 1,376,952 | T→A | 5.1% | C41S (TGT→AGT) ‡ | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,376,953 | G→C | 5.1% | C41S (TGT→TCT) ‡ | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,376,954 | T→A | 5.1% | C41* (TGT→TGA) ‡ | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,417,011 | C→T | 5.5% | E126K (GAA→AAA) | recE ← | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease |
| RA | 1,438,536 | A→C | 9.6% | L750R (CTG→CGG) | pfo ← | pyruvate‑flavodoxin oxidoreductase |
| RA | 1,438,541 | A→G | 8.3% | C748C (TGT→TGC) ‡ | pfo ← | pyruvate‑flavodoxin oxidoreductase |
| RA | 1,438,542 | C→T | 10.2% | C748Y (TGT→TAT) ‡ | pfo ← | pyruvate‑flavodoxin oxidoreductase |
| RA | 1,438,547 | G→T | 9.6% | T746T (ACC→ACA) | pfo ← | pyruvate‑flavodoxin oxidoreductase |
| RA | 1,466,207 | C→T | 5.2% | pseudogene (816/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,504,888 | T→G | 5.1% | intergenic (+23/+17) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,893 | G→A | 5.3% | intergenic (+28/+12) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,534,897 | A→T | 5.3% | intergenic (+28/+68) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,552,256 | G→A | 8.8% | intergenic (+265/+142) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,257 | C→A | 8.6% | intergenic (+266/+141) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,263 | G→T | 9.5% | intergenic (+272/+135) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,264 | A→C | 9.6% | intergenic (+273/+134) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,270 | T→G | 8.3% | intergenic (+279/+128) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,271 | T→C | 8.3% | intergenic (+280/+127) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,557,337 | A→T | 5.3% | P234P (CCT→CCA) | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,595,637 | G→A | 5.3% | pseudogene (2351/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,679,398 | T→A | 6.4% | intergenic (+27/‑159) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,679,400 | G→C | 6.3% | intergenic (+29/‑157) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,679,402 | T→A | 5.7% | intergenic (+31/‑155) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,727,776 | T→G | 5.6% | intergenic (+20/‑61) | nemA → / → gloA | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme/glyoxalase I, Ni‑dependent |
| RA | 1,727,777 | A→C | 5.2% | intergenic (+21/‑60) | nemA → / → gloA | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme/glyoxalase I, Ni‑dependent |
| RA | 1,727,778 | A→T | 5.3% | intergenic (+22/‑59) | nemA → / → gloA | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme/glyoxalase I, Ni‑dependent |
| RA | 1,727,780 | G→T | 5.3% | intergenic (+24/‑57) | nemA → / → gloA | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme/glyoxalase I, Ni‑dependent |
| RA | 1,864,758 | G→A | 7.1% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,763 | A→T | 6.1% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,768 | T→C | 5.5% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,881,099 | C→T | 6.0% | G237G (GGG→GGA) | dmlR ← | transcriptional activator of dmlA |
| RA | 1,958,683 | A→T | 5.1% | V195D (GTC→GAC) | cutC ← | copper homeostasis protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,002,893 | A→G | 5.2% | G238G (GGT→GGC) ‡ | fliC ← | flagellar filament structural protein (flagellin) |
| RA | 2,002,894 | C→G | 5.2% | G238A (GGT→GCT) ‡ | fliC ← | flagellar filament structural protein (flagellin) |
| RA | 2,002,895 | C→T | 5.2% | G238S (GGT→AGT) ‡ | fliC ← | flagellar filament structural protein (flagellin) |
| RA | 2,055,120 | G→C | 5.2% | L20L (CTG→CTC) | amn → | AMP nucleosidase |
| RA | 2,060,278 | G→T | 6.6% | R213S (CGC→AGC) | cbl ← | ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,066,392 | T→A | 7.7% | K310N (AAA→AAT) ‡ | insH1 ← | IS5 transposase and trans‑activator |
| RA | 2,066,394 | T→C | 9.6% | K310E (AAA→GAA) ‡ | insH1 ← | IS5 transposase and trans‑activator |
| RA | 2,068,409 | G→C | 5.3% | pseudogene (11/159 nt) | yoeH ← | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,068,410 | T→A | 5.9% | pseudogene (10/159 nt) | yoeH ← | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,119,997 | T→C | 5.4% | A54A (GCA→GCG) | wzxC ← | putative colanic acid exporter |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,229,322 | C→G | 5.2% | intergenic (+257/+116) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,229,323 | C→G | 5.2% | intergenic (+258/+115) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,230,416 | G→C | 5.1% | intergenic (‑31/‑208) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,282,832 | C→G | 6.6% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,833 | G→A | 5.1% | intergenic (+32/+107) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,295,783 | A→G | 6.2% | W180R (TGG→CGG) | ccmC ← | heme export ABC transporter permease; CcmE‑interacting protein |
| RA | 2,305,085 | A→G | 6.0% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 6.0% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 5.9% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,352,894 | G→C | 46.5% | R83P (CGT→CCT) | glpA → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, large FAD/NAD(P)‑binding subunit |
| RA | 2,382,115 | C→T | 5.6% | P170S (CCG→TCG) | rbn → | RNase BN, tRNA processing enzyme |
| RA | 2,432,990 | G→C | 5.8% | intergenic (‑48/+22) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,432,995 | C→T | 5.4% | intergenic (‑53/+17) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,499,655 | Δ1 bp | 5.1% | coding (985/1698 nt) | ypdA → | sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system |
| RA | 2,532,268 | T→C | 5.2% | intergenic (+44/‑141) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,533,415 | T→A | 8.6% | intergenic (+35/‑349) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,416 | T→A | 8.6% | intergenic (+36/‑348) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,417 | T→A | 8.5% | intergenic (+37/‑347) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,418 | T→A | 8.6% | intergenic (+38/‑346) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,560,985 | C→A | 17.2% | intergenic (+87/‑383) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,691,169 | A→T | 6.1% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 6.2% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 6.1% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,721,243 | G→A | 56.1% | G431R (GGA→AGA) | pka → | protein lysine acetyltransferase |
| RA | 2,726,044 | T→G | 5.0% | intergenic (‑298/+25) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,761,620 | T→G | 6.2% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 5.8% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,762,222 | A→C | 5.4% | I440S (ATC→AGC) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,791,077 | C→A | 6.5% | P366T (CCG→ACG) | lhgO → | L‑2‑hydroxyglutarate oxidase |
| RA | 2,814,174 | T→A | 7.1% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 6.1% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,866,487 | G→C | 7.6% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 7.8% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,900,327 | A→C | 5.6% | intergenic (‑54/‑265) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,906,607 | C→T | 5.8% | intergenic (+24/+36) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,609 | G→C | 5.4% | intergenic (+26/+34) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 3,161,239 | C→G | 5.9% | intergenic (‑93/+18) | ygiQ ← / ← ftsP | Radical SAM superfamily protein/septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
| RA | 3,176,319 | C→A | 54.1% | C172F (TGT→TTT) | cpdA ← | 3',5' cAMP phosphodiesterase |
| RA | 3,214,853 | C→A | 45.5% | R603S (CGT→AGT) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,269,967 | C→T | 11.7% | intergenic (+365/+249) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,968 | G→T | 10.9% | intergenic (+366/+248) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,969 | A→C | 12.6% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,970 | A→G | 11.2% | intergenic (+368/+246) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,069 | C→T | 12.8% | intergenic (+467/+147) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,193 | C→T | 7.3% | intergenic (+591/+23) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,194 | G→T | 7.5% | intergenic (+592/+22) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,195 | A→C | 6.2% | intergenic (+593/+21) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,196 | A→G | 6.7% | intergenic (+594/+20) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,276,886 | C→A | 6.9% | intergenic (+33/‑116) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,887 | T→C | 6.5% | intergenic (+34/‑115) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,890 | G→A | 6.6% | intergenic (+37/‑112) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,891 | T→G | 7.1% | intergenic (+38/‑111) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,324,952 | A→G | 5.2% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 5.3% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 5.0% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,462,943 | G→A | 5.9% | G7D (GGC→GAC) | gspK → | general secretory pathway component, cryptic |
| RA | 3,462,946 | T→C | 5.9% | V8A (GTC→GCC) | gspK → | general secretory pathway component, cryptic |
| RA | 3,462,951 | C→T | 5.1% | L10L (CTG→TTG) | gspK → | general secretory pathway component, cryptic |
| RA | 3,462,954 | C→T | 5.0% | L11F (CTC→TTC) | gspK → | general secretory pathway component, cryptic |
| RA | 3,503,970 | G→A | 8.3% | intergenic (+18/‑82) | frlD → / → frlR | fructoselysine 6‑kinase/putative DNA‑binding transcriptional regulator |
| RA | 3,503,971 | C→G | 8.3% | intergenic (+19/‑81) | frlD → / → frlR | fructoselysine 6‑kinase/putative DNA‑binding transcriptional regulator |
| RA | 3,503,974 | C→G | 8.6% | intergenic (+22/‑78) | frlD → / → frlR | fructoselysine 6‑kinase/putative DNA‑binding transcriptional regulator |
| RA | 3,503,975 | T→C | 8.6% | intergenic (+23/‑77) | frlD → / → frlR | fructoselysine 6‑kinase/putative DNA‑binding transcriptional regulator |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,642,358 | T→A | 8.2% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 8.2% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,658,002 | C→T | 5.1% | noncoding (53/69 nt) | arrS ← | antisense sRNA ArrS, function unknown |
| RA | 3,658,004 | A→G | 5.1% | noncoding (51/69 nt) | arrS ← | antisense sRNA ArrS, function unknown |
| RA | 3,711,252 | T→A | 8.5% | A252A (GCA→GCT) | yhjX ← | pyruvate‑inducible inner membrane protein, putative transporter |
| RA | 3,720,299 | T→A | 6.2% | intergenic (+38/+149) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,768,131 | A→T | 100% | pseudogene (911/945 nt) | rhsJ → | Rhs‑family protein |
| RA | 3,853,674 | G→T | 5.8% | intergenic (+32/‑248) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,675 | A→T | 6.1% | intergenic (+33/‑247) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,676 | A→T | 5.9% | intergenic (+34/‑246) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,677 | A→C | 5.7% | intergenic (+35/‑245) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,959,515 | T→A | 6.1% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,964,929 | C→T | 100% | E234E (GAG→GAA) | rhlB ← | ATP‑dependent RNA helicase |
| RA | 4,142,509 | T→G | 5.1% | intergenic (‑288/‑21) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,197,139 | T→C | 5.0% | F79F (TTT→TTC) | nudC → | NADH pyrophosphatase |
| RA | 4,287,422:1 | +G | 16.8% | intergenic (‑51/‑342) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,296,060 | C→T | 26.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,335,654 | T→A | 5.6% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 5.5% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,353,170 | G→A | 6.4% | intergenic (+89/+30) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,171 | C→G | 6.4% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,172 | C→G | 6.9% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,173 | T→C | 6.4% | intergenic (+92/+27) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,388,496 | T→A | 5.2% | Q292L (CAG→CTG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,388,502 | G→C | 5.4% | A290G (GCC→GGC) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,388,508 | T→A | 6.2% | Q288L (CAG→CTG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,479,012 | A→T | 7.8% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 7.9% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 7.0% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,488,424 | G→T | 5.1% | intergenic (+24/+137) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,427 | A→C | 5.1% | intergenic (+27/+134) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,606,239 | A→G | 17.0% | noncoding (48/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,606,557 | T→G | 6.0% | intergenic (‑156/+112) | leuQ ← / ← rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| RA | 4,639,712 | G→A | 50.7% | R199C (CGT→TGT) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 123038 | 127560 | 4523 | 41 [36] | [39] 41 | [aceE]–[aceF] | [aceE],[aceF] |
| * | * | ÷ | NC_000913 | 3423749–3424234 | 3424571–3424238 | 5–823 | 41 [40] | [40] 42 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 20454 = | 9 (0.080) | 4 (0.040) | 4/252 | NT | 38.6% | noncoding (110/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 291280 = | 4 (0.040) | noncoding (122/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 164555 | 96 (0.900) | 10 (0.100) | 10/242 | NT | 10.0% | intergenic (+21/‑175) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| ? | NC_000913 | = 164558 | 90 (0.900) | intergenic (+24/‑172) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase | |||||
| * | ? | NC_000913 | = 781683 | 96 (0.900) | 7 (0.070) | 6/238 | NT | 7.2% | intergenic (+31/‑402) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | NC_000913 | = 2521332 | 92 (0.940) | intergenic (+4/+261) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | = 859192 | 78 (0.730) | 4 (0.040) | 4/244 | NT | 5.1% | intergenic (‑131/+21) | ybiU/ybiV | DUF1479 family protein/sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase |
| ? | NC_000913 | = 859197 | 76 (0.760) | intergenic (‑136/+16) | ybiU/ybiV | DUF1479 family protein/sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase | |||||
| * | ? | NC_000913 | 905931 = | 104 (0.970) | 1715 (16.790) | 239/248 | NT | 95.4% | coding (823/1014 nt) | ybjS | putative NAD(P)H‑dependent oxidoreductase |
| ? | NC_000913 | = 912978 | 65 (0.640) | coding (837/1653 nt) | hcp | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases | |||||
| * | ? | NC_000913 | 911147 = | NA (NA) | 27 (0.270) | 15/242 | NT | NA | noncoding (1/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 911173 = | NA (NA) | intergenic (‑124/+9) | poxB/hcr | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent | |||||
| * | ? | NC_000913 | = 911155 | NA (NA) | 12 (0.120) | 9/242 | NT | NA | noncoding (9/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 911163 | NA (NA) | noncoding (17/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1207790 = | 25 (0.230) | 41 (0.440) | 38/228 | NT | 59.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 33 (0.350) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 25 (0.230) | 45 (0.480) | 32/228 | NT | 62.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 33 (0.350) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1517771 | 72 (0.670) | 5 (0.050) | 5/246 | NT | 7.0% | coding (124/234 nt) | ydcY | DUF2526 family protein |
| ? | NC_000913 | = 1517796 | 64 (0.630) | coding (149/234 nt) | ydcY | DUF2526 family protein | |||||
| * | ? | NC_000913 | 1727769 = | 84 (0.780) | 7 (0.070) | 5/246 | NT | 8.3% | intergenic (+13/‑68) | nemA/gloA | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme/glyoxalase I, Ni‑dependent |
| ? | NC_000913 | 1727789 = | 76 (0.750) | intergenic (+33/‑48) | nemA/gloA | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme/glyoxalase I, Ni‑dependent | |||||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 67 (0.630) | 56/260 | NT | 24.9% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4276590 = | 202 (1.890) | coding (1120/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913 | = 2259477 | 103 (0.960) | 11 (0.100) | 11/260 | NT | 10.1% | intergenic (‑181/+242) | psuK/fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| ? | NC_000913 | 2278889 = | 92 (0.860) | coding (872/1191 nt) | bcr | bicyclomycin/cysteine/sulfonamide efflux transporter | |||||
| * | ? | NC_000913 | = 2304952 | NA (NA) | 6 (0.060) +C |
5/258 | NT | NA | noncoding (536/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305105 | NA (NA) | intergenic (+712/+3) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain | |||||
| * | ? | NC_000913 | 2358009 = | 102 (0.950) | 5 (0.050) | 5/246 | NT | 5.3% | intergenic (+8/+33) | ypaA/rhmA | pseudogene, C‑terminal fragment, Transposase_31 family/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| ? | NC_000913 | 2358036 = | 84 (0.830) | intergenic (+35/+6) | ypaA/rhmA | pseudogene, C‑terminal fragment, Transposase_31 family/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase | |||||
| * | ? | NC_000913 | = 2466679 | 105 (0.980) | 6 (0.060) | 6/248 | NT | 5.4% | coding (135/1158 nt) | intS | CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
| ? | NC_000913 | = 2466694 | 112 (1.100) | coding (150/1158 nt) | intS | CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase | |||||
| * | ? | NC_000913 | = 2533414 | 93 (0.870) | 7 (0.070) | 10/236 | NT | 7.5% | intergenic (+34/‑350) | cysK/ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| ? | NC_000913 | = 2533418 | 88 (0.910) | intergenic (+38/‑346) | cysK/ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) | |||||
| * | ? | NC_000913 | = 3255287 | NA (NA) | 3 (0.030) | 3/248 | NT | NA | noncoding (71/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3255319 | NA (NA) | noncoding (103/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3277819 = | NA (NA) | 4 (0.040) | 4/244 | NT | NA | noncoding (1/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3277844 = | NA (NA) | noncoding (26/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3406291 = | 97 (0.910) | 5 (0.050) | 4/246 | NT | 5.4% | coding (375/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | NC_000913 | 3406330 = | 83 (0.820) | coding (414/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | NC_000913 | = 3534496 | 89 (0.830) | 9 (0.090) | 6/238 | NT | 9.7% | intergenic (+56/+20) | pck/envZ | phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | NC_000913 | = 3534502 | 87 (0.890) | intergenic (+62/+14) | pck/envZ | phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 63 (0.590) | 53/260 | NT | 27.4% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4327472 | 167 (1.560) | coding (338/2229 nt) | crfC | clamp‑binding sister replication fork colocalization protein, dynamin‑related | |||||
| * | ? | NC_000913 | 3587430 = | 104 (0.970) | 7 (0.070) | 6/240 | NT | 7.0% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | NC_000913 | 3587464 = | 89 (0.900) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||
| * | ? | NC_000913 | = 3625591 | 66 (0.620) | 56 (0.530) | 46/258 | NT | 46.1% | noncoding (3/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | 3720633 = | NA (NA) | 51 (0.480) | 48/260 | NT | 30.7% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 4337579 | 115 (1.070) | coding (351/762 nt) | adiY | adi system transcriptional activator | |||||
| * | ? | NC_000913 | = 3819519 | 148 (1.380) | 8 (0.080) | 8/242 | NT | 5.2% | coding (1652/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| ? | NC_000913 | = 3819527 | 152 (1.520) | coding (1644/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent | |||||
| * | ? | NC_000913 | = 4040683 | 115 (1.070) | 21 (0.200) | 6/256 | NT | 12.0% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 194 (1.840) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4171761 | 116 (1.080) | 23 (0.220) +TAG |
6/254 | NT | 12.6% | intergenic (+5/‑296) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213198 | 212 (1.980) | intergenic (+39/‑36) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 4304575 = | 281 (2.620) | 18 (0.180) | 14/238 | NT | 6.8% | intergenic (‑172/+37) | ytcA/yjcS | putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein |
| ? | NC_000913 | 4304603 = | 233 (2.380) | intergenic (‑200/+9) | ytcA/yjcS | putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein | |||||
| * | ? | NC_000913 | 4542682 = | 97 (0.910) | 7 (0.070) | 7/242 | NT | 5.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 138 (1.380) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4606557 = | NA (NA) | 6 (0.060) | 6/258 | NT | NA | intergenic (‑156/+112) | leuQ/rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 4606591 = | NA (NA) | noncoding (34/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||