Thu Sep 10 20:29:09 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/9 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/Plate-1-BOP-1000-PFKA-END-2_S26_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-1-BOP-1000-PFKA-END-2_S26_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-1-BOP-1000-PFKA-END-2_S26_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-1-BOP-1000-PFKA-END-2_S26_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-1-BOP-1000-PFKA-END-2_S26_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-1-BOP-1000-PFKA-END-2_S26_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-1-BOP-1000-PFKA-END-2_S26_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-1-BOP-1000-PFKA-END-2_S26_L004_R2_001.good.fq.gz