Thu Sep 10 18:18:37 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/1 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/Plate-2-BOP-27-SUCB-ALE-1-flask-15_S34_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-SUCB-ALE-1-flask-15_S34_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-SUCB-ALE-1-flask-15_S34_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-SUCB-ALE-1-flask-15_S34_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-SUCB-ALE-1-flask-15_S34_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-SUCB-ALE-1-flask-15_S34_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-SUCB-ALE-1-flask-15_S34_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-SUCB-ALE-1-flask-15_S34_L004_R2_001.good.fq.gz