Wed Feb 26 10:49:09 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o breseq_processes/82 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/pgi-4-3_S11_L001_R1_001.good.fq /var/alemutpipe-outputs/good/pgi-4-3_S11_L001_R2_001.good.fq