Mon Feb 24 17:05:25 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o breseq_processes/9 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/CCK_tpIsolate_AEvo04EP_Isolate_2_S1588_L005_R1_001.good.fq.gz /var/alemutpipe-outputs/good/CCK_tpIsolate_AEvo04EP_Isolate_2_S1588_L005_R2_001.good.fq.gz