mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 31,061 | G→A | 3.1% | R82H (CGC→CAC) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 54,306 | G→A | 2.5% | R133C (CGC→TGC) | surA ← | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
| RA | 61,877 | C→T | 3.2% | R463H (CGT→CAT) | rapA ← | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase |
| RA | 117,611 | G→A | 2.6% | intergenic (‑62/+141) | ppdD ← / ← nadC | putative prepilin peptidase‑dependent pilin/quinolinate phosphoribosyltransferase |
| RA | 119,226 | C→G | 2.5% | P165R (CCC→CGC) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase, Zn‑dependent, murein amidase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 279,928 | A→T | 4.0% | intergenic (‑53/‑3) | insA ← / → insI1 | IS1 repressor TnpA/IS30 transposase,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| RA | 290,317 | A→G | 5.0% | intergenic (‑12/‑112) | argF ← / → ykgS | ornithine carbamoyltransferase 2, chain F, CP4‑6 prophage/pseudogene |
| RA | 292,102 | A→G | 3.1% | pseudogene (699/828 nt) | yagJ → | CP4‑6 prophage, uncharacterized protein,Phage or Prophage Related |
| RA | 374,944 | G→T | 2.8% | intergenic (+63/‑515) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,945 | A→C | 2.8% | intergenic (+64/‑514) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 451,338:1 | +C | 2.9% | coding (273/948 nt) | cyoA ← | cytochrome o ubiquinol oxidase subunit II |
| RA | 518,299 | G→T | 3.9% | intergenic (‑20/+41) | ybbN ← / ← ybbO | DnaK co‑chaperone, thioredoxin‑like protein/putative oxidoreductase |
| RA | 580,112 | Δ1 bp | 3.3% | intergenic (+26/+139) | ybcW → / ← ylcI | DLP12 prophage, uncharacterized protein/DUF3950 family protein, DLP12 prophage |
| RA | 580,113 | Δ1 bp | 3.3% | intergenic (+27/+138) | ybcW → / ← ylcI | DLP12 prophage, uncharacterized protein/DUF3950 family protein, DLP12 prophage |
| RA | 582,359 | Δ1 bp | 3.1% | pseudogene (446/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,360 | Δ1 bp | 3.1% | pseudogene (445/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,361 | Δ1 bp | 3.1% | pseudogene (444/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,362 | Δ1 bp | 3.1% | pseudogene (443/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,363 | Δ1 bp | 3.1% | pseudogene (442/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,364 | Δ1 bp | 3.1% | pseudogene (441/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,365 | Δ1 bp | 3.0% | pseudogene (440/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,366 | Δ1 bp | 3.0% | pseudogene (439/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,367 | Δ1 bp | 2.9% | pseudogene (438/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,368 | Δ1 bp | 3.0% | pseudogene (437/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,369 | Δ1 bp | 3.0% | pseudogene (436/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 582,370 | Δ1 bp | 3.0% | pseudogene (435/653 nt) | ybcY ← | pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| RA | 587,156:1 | +C | 2.8% | coding (826/891 nt) | ybcH ← | PRK09936 family protein |
| JC | 628,060 | Δ3 bp | 5.5% | coding (367‑369/858 nt) | entB → | isochorismatase |
| RA | 754,672:1 | +T | 4.3% | intergenic (‑204/‑505) | gltA ← / → sdhC | citrate synthase/succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| RA | 766,051 | T→A | 4.9% | L23Q (CTG→CAG) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 903,224 | C→A | 3.3% | A171S (GCA→TCA) | artP ← | arginine ABC transporter ATPase |
| RA | 989,549 | C→T | 2.8% | G270S (GGT→AGT) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 1,062,106 | A→G | 4.8% | E103G (GAG→GGG) | torD → | TorA‑maturation chaperone |
| RA | 1,096,485 | A→T | 2.6% | I215F (ATT→TTT) | ycdU → | putative inner membrane protein |
| RA | 1,196,305 | C→T | 100% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,245,182 | T→C | 3.2% | L8S (TTA→TCA) | ycgY → | uncharacterized protein |
| RA | 1,262,603 | A→T | 3.1% | I92N (ATC→AAC) | ispE ← | 4‑diphosphocytidyl‑2‑C‑methylerythritol kinase |
| RA | 1,303,527 | G→T | 2.9% | R210L (CGG→CTG) | oppB → | oligopeptide ABC transporter permease |
| RA | 1,350,429 | C→T | 2.9% | R204H (CGC→CAC) | fabI ← | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent |
| RA | 1,492,878 | Δ1 bp | 4.2% | coding (409/1641 nt) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,604,356 | A→G | 2.8% | N104D (AAC→GAC) | lsrD → | autoinducer 2 import system permease protein |
| RA | 1,840,377 | Δ1 bp | 2.8% | coding (911/1308 nt) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,843,992 | A→G | 2.9% | F294L (TTT→CTT) | ynjI ← | inner membrane protein |
| RA | 1,868,104 | A→G | 3.6% | K399K (AAA→AAG) | yeaG → | protein kinase, endogenous substrate unidentified, autokinase |
| RA | 2,035,361 | C→G | 3.1% | intergenic (+118/‑474) | yedS → / → hchA | pseudogene, outer membrane protein homology, putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,136,219 | A→T | 3.1% | V342E (GTG→GAG) | wza ← | colanic acid export protein, outer membrane auxillary lipoprotein |
| RA | 2,243,661 | T→A | 3.0% | intergenic (‑11/‑247) | folE ← / → yeiG | GTP cyclohydrolase I/S‑formylglutathione hydrolase |
| JC | 2,414,787 | Δ15 bp | 3.1% | coding (43‑57/2145 nt) | pta → | phosphate acetyltransferase |
| RA | 2,415,464 | Δ1 bp | 7.0% | coding (720/2145 nt) | pta → | phosphate acetyltransferase |
| RA | 2,423,282 | T→C | 3.1% | K86E (AAG→GAG) | yfcI ← | transposase_31 family protein |
| RA | 2,455,420 | G→T | 4.1% | F75L (TTC→TTA) | yfcV ← | putative fimbrial‑like adhesin protein |
| RA | 2,534,289 | Δ1 bp | 3.2% | coding (226/1728 nt) | ptsI → | PEP‑protein phosphotransferase of PTS system (enzyme I) |
| RA | 2,572,028 | A→G | 2.5% | T7T (ACT→ACC) | eutN ← | Ethanolamine catabolic microcompartment shell protein |
| RA | 2,625,426 | C→T | 3.2% | A105V (GCG→GTG) | ppx → | exopolyphosphatase |
| RA | 2,707,558 | Δ1 bp | 100% | coding (242/480 nt) | rseC ← | SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,854,269 | T→A | 2.8% | intergenic (+7/‑67) | hypE → / → fhlA | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein/formate hydrogenlyase transcriptional activator |
| RA | 3,037,131:1 | +G | 2.6% | coding (974/1734 nt) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,037,131:2 | +C | 2.6% | coding (974/1734 nt) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,213,427 | A→C | 6.7% | N128T (AAC→ACC) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,213,432 | G→A | 50.9% | V130I (GTT→ATT) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,324,196 | Δ1 bp | 3.2% | coding (714/849 nt) | folP ← | 7,8‑dihydropteroate synthase |
| RA | 3,377,888 | A→G | 2.7% | R106R (CGT→CGC) | rpsI ← | 30S ribosomal subunit protein S9 |
| RA | 3,500,503 | C→T | 2.9% | A199V (GCG→GTG) | frlA → | putative fructoselysine transporter |
| RA | 3,605,196 | C→T | 2.8% | F73F (TTC→TTT) | yhhL → | DUF1145 family protein |
| RA | 3,710,552 | G→T | 2.9% | intergenic (‑78/+246) | eptB ← / ← yhjX | KDO phosphoethanolamine transferase, Ca(2+)‑inducible/pyruvate‑inducible inner membrane protein, putative transporter |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,841,328 | C→A | 3.9% | V137V (GTG→GTT) | nepI ← | putative transporter |
| JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,039,444 | Δ1 bp | 3.3% | noncoding (1927/2905 nt) | rrlA → | 23S ribosomal RNA of rrnA operon |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,265,710 | G→A | 4.8% | P466P (CCG→CCA) | dnaB → | replicative DNA helicase |
| RA | 4,268,239 | T→C | 4.2% | M376T (ATG→ACG) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| RA | 4,295,833 | T→C | 7.4% | intergenic (+40/+604) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,059 | C→T | 4.2% | intergenic (+266/+378) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,154 | T→C | 9.2% | intergenic (+361/+283) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,189 | A→G | 30.9% | intergenic (+396/+248) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,190 | A→C | 29.8% | intergenic (+397/+247) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,352,830 | T→A | 4.3% | F82L (TTT→TTA) | ghoS → | antitoxin of GhoTS toxin‑antitoxin pair, endonuclease for ghoT mRNA |
| RA | 4,354,909 | A→T | 7.4% | intergenic (‑191/+46) | lysU ← / ← dtpC | lysine tRNA synthetase, inducible/dipeptide and tripeptide permease |
| RA | 4,397,773 | T→C | 3.0% | W121R (TGG→CGG) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,452,306 | Δ1 bp | 3.1% | coding (1248/1503 nt) | ytfR → | putative sugar ABC transporter ATPase |
| RA | 4,541,342 | G→A | 2.7% | G129S (GGT→AGT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,618,270 | Δ1 bp | 2.6% | coding (41/1323 nt) | deoA → | thymidine phosphorylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423826–3424401 | 3424401 | 1–576 | 54 [51] | [53] 54 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4233715 | 4235546 | 1832 | 54 [53] | [51] 54 | pgi | pgi |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 105 (0.800) | 71/504 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 11 (0.090) | 10/486 | NT | NA | coding (339/366 nt) coding (16/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | NC_000913 | = 381743 | NA (NA) | coding (70/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913 | 458787 = | 4 (0.030) | 118 (0.900) | 73/498 | NT | 96.8% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 0 (0.000) | 116 (0.890) | 79/496 | NT | 100% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 995022 = | 132 (1.000) | 4 (0.030) | 3/488 | NT | 3.1% | coding (967/1146 nt) | ssuD | alkanesulfonate monooxygenase, FMNH(2)‑dependent |
| ? | NC_000913 | 995153 = | 120 (0.940) | coding (836/1146 nt) | ssuD | alkanesulfonate monooxygenase, FMNH(2)‑dependent | |||||
| * | ? | NC_000913 | = 1066842 | 107 (0.810) | 3 (0.020) | 3/484 | NT | 2.8% | intergenic (+16/+22) | agp/yccJ | glucose‑1‑phosphatase/inositol phosphatase/uncharacterized protein |
| ? | NC_000913 | = 1066847 | 106 (0.840) | intergenic (+21/+17) | agp/yccJ | glucose‑1‑phosphatase/inositol phosphatase/uncharacterized protein | |||||
| * | ? | NC_000913 | 1105952 = | 114 (0.860) | 4 (0.030) | 4/486 | NT | 3.5% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase, RNase III inhibitor during cold shock, putative cardiolipin synthase C regulatory subunit |
| ? | NC_000913 | 1105994 = | 110 (0.860) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase, RNase III inhibitor during cold shock, putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | NC_000913 | 1207790 = | 67 (0.510) | 92 (0.740) | 69/472 | NT | 65.8% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 33 (0.270) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 61 (0.460) | 71 (0.570) | 51/472 | NT | 61.2% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 33 (0.270) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1272758 = | 142 (1.080) | 3 (0.020) | 3/482 | NT | 2.7% | coding (252/696 nt) | chaC | cation transport regulator |
| ? | NC_000913 | 1273352 = | 84 (0.670) | coding (248/354 nt) | ychN | putative sulfur relay protein | |||||
| * | ? | NC_000913 | 1293032 = | 2 (0.020) | 139 (1.050) | 88/504 | NT | 98.6% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 74 (0.570) | 54/496 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1560542 = | 121 (0.920) | 3 (0.020) | 3/500 | NT | 2.8% | coding (388/1023 nt) | ddpB | D,D‑dipeptide ABC transporter permease |
| ? | NC_000913 | 1560822 = | 89 (0.680) | coding (108/1023 nt) | ddpB | D,D‑dipeptide ABC transporter permease | |||||
| * | ? | NC_000913 | = 1590598 | 103 (0.780) | 4 (0.030) | 4/486 | NT | 3.9% | intergenic (‑62/+256) | yneL/hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation, toxin of HipAB TA pair, autokinase |
| ? | NC_000913 | = 1590605 | 99 (0.780) | intergenic (‑69/+249) | yneL/hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation, toxin of HipAB TA pair, autokinase | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 52 (0.410) | 40/488 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 73 (0.550) | 50/504 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 90 (0.680) | 63/504 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 2647280 | 130 (0.980) | 7 (0.060) | 7/484 | NT | 5.5% | coding (44/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase, inactive transpeptidase domain protein |
| ? | NC_000913 | = 2647349 | 117 (0.920) | coding (4937/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein | |||||
| * | ? | NC_000913 | = 2713827 | 151 (1.140) | 5 (0.040) | 5/482 | NT | 3.8% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713906 | 109 (0.860) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 3220244 | 149 (1.130) | 5 (0.040) | 5/484 | NT | 3.2% | coding (753/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 3220396 | 164 (1.290) | coding (905/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | 3652035 = | NA (NA) | 124 (0.940) | 72/504 | NT | 100% | intergenic (+5/+146) | yhiS/insH1 | pseudogene/IS5 transposase and trans‑activator |
| ? | NC_000913 | = 4049924 | 0 (0.000) | noncoding (27/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent | |||||
| * | ? | NC_000913 | = 3653229 | NA (NA) | 164 (1.240) | 89/504 | NT | 100% | intergenic (‑32/‑1) | insH1/yhiS | IS5 transposase and trans‑activator/pseudogene |
| ? | NC_000913 | 4049921 = | 0 (0.000) | noncoding (24/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent | |||||
| * | ? | NC_000913 | 4295831 = | NA (NA) | 13 (0.120) | 8/426 | NT | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296395 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4542683 = | 40 (0.300) | 9 (0.070) | 9/486 | NT | 14.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542997 = | 72 (0.570) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542691 | 38 (0.290) | 9 (0.070) | 8/486 | NT | 14.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542987 | 72 (0.570) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||