mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 57,295 | G→A | 3.1% | intergenic (‑186/‑69) | lptD ← / → djlA | LPS assembly OM complex LptDE, beta‑barrel component/membrane‑anchored DnaK co‑chaperone, DNA‑binding protein |
| RA | 210,489 | A→G | 3.2% | I271V (ATT→GTT) | ldcC → | lysine decarboxylase 2, constitutive |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 349,717 | T→C | 4.9% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 357,510 | C→A | 2.6% | intergenic (+56/+281) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon, autorepressor |
| RA | 375,247 | A→G | 3.6% | intergenic (+366/‑212) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 475,054 | G→A | 2.9% | G36G (GGC→GGT) | tesB ← | acyl‑CoA thioesterase 2 |
| RA | 738,514 | A→G | 2.7% | G141G (GGA→GGG) | ybfD → | H repeat‑associated putative transposase |
| RA | 847,213 | A→T | 2.7% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 2.8% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 852,177 | A→C | 4.7% | F141V (TTC→GTC) | opgE ← | OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 884,387 | A→G | 6.1% | I239V (ATC→GTC) | mdfA → | multidrug efflux system protein |
| RA | 1,269,451 | G→T | 3.5% | intergenic (+62/+252) | rdlA → / ← ldrB | sRNA antisense regulator affects LdrA translation, proposed addiction module in LDR‑A repeat, with toxic peptide LdrA/toxic polypeptide, small |
| RA | 1,424,488 | T→A | 2.5% | F236Y (TTT→TAT) | trkG → | Rac prophage, potassium transporter subunit |
| RA | 1,552,023 | T→C | 2.7% | intergenic (+32/+375) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,708,766 | C→T | 6.7% | V616V (GTC→GTT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,844 | C→G | 5.8% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,830,060 | G→C | 2.9% | R236G (CGC→GGC) | astA ← | arginine succinyltransferase |
| RA | 1,830,064 | A→C | 3.1% | P234P (CCT→CCG) ‡ | astA ← | arginine succinyltransferase |
| RA | 1,830,065 | G→C | 2.7% | P234R (CCT→CGT) ‡ | astA ← | arginine succinyltransferase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,024,254 | Δ1 bp | 4.9% | coding (287/624 nt) | rcsA → | transcriptional regulator of colanic acid capsular biosynthesis |
| RA | 2,066,465 | T→C | 100% | K286R (AAG→AGG) | insH1 ← | IS5 transposase and trans‑activator |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,253,008 | Δ1 bp | 2.6% | coding (1136/1251 nt) | nupX ← | nucleoside permease |
| RA | 2,275,838 | T→G | 3.9% | F190V (TTT→GTT) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,839 | T→A | 3.2% | F190Y (TTT→TAT) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,840 | T→A | 3.3% | F190L (TTT→TTA) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,841 | T→A | 3.2% | L191M (TTG→ATG) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,842 | T→G | 3.2% | L191W (TTG→TGG) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,843 | G→T | 3.0% | L191F (TTG→TTT) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,845 | T→A | 3.2% | I192N (ATT→AAT) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,846 | T→A | 3.5% | I192I (ATT→ATA) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,849 | T→A | 3.2% | I193I (ATT→ATA) | yejE → | microcin C ABC transporter permease |
| RA | 2,275,850 | T→A | 3.2% | L194I (TTA→ATA) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,852 | A→C | 3.7% | L194F (TTA→TTC) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,853 | C→A | 3.3% | L195I (CTT→ATT) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,854 | T→A | 3.1% | L195H (CTT→CAT) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,855 | T→A | 3.1% | L195L (CTT→CTA) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,856 | T→A | 3.7% | S196T (TCC→ACC) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,275,857 | C→A | 3.2% | S196Y (TCC→TAC) ‡ | yejE → | microcin C ABC transporter permease |
| RA | 2,304,678 | T→C | 5.8% | intergenic (+287/+428) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,011 | A→G | 3.9% | intergenic (+620/+95) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,368,587 | Δ1 bp | 2.7% | coding (551/1983 nt) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,387,336 | Δ1 bp | 2.6% | coding (405/504 nt) | yfbM → | DUF1877 family protein |
| RA | 2,398,403 | Δ1 bp | 3.0% | coding (1761/2727 nt) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,442,533 | A→G | 3.3% | N258D (AAC→GAC) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,509,469 | G→A | 100% | intergenic (‑45/‑159) | glk ← / → yfeO | glucokinase/putative ion channel protein |
| RA | 2,547,379 | T→C | 2.8% | W237R (TGG→CGG) | murP → | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| RA | 2,748,668 | G→A | 2.8% | V237I (GTC→ATC) | ypjD → | cytochrome c assembly protein family inner membrane protein |
| RA | 2,977,122 | C→A | 4.1% | H176N (CAT→AAT) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor |
| RA | 2,977,560 | Δ1 bp | 52.2% | coding (964/1032 nt) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor |
| RA | 2,977,578 | T→G | 18.0% | S328A (TCA→GCA) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor |
| RA | 3,003,171 | C→T | 3.2% | A187V (GCC→GTC) | xdhB → | xanthine dehydrogenase, FAD‑binding subunit |
| RA | 3,075,867 | A→T | 2.6% | F105Y (TTC→TAC) | yggF ← | fructose 1,6 bisphosphatase isozyme |
| RA | 3,389,264 | Δ1 bp | 3.5% | coding (72/204 nt) | aaeX ← | DUF1656 family putative inner membrane efflux pump associated protein |
| RA | 3,528,106 | T→G | 3.5% | L547R (CTG→CGG) | yrfF → | putative RcsCDB‑response attenuator, inner membrane protein |
| RA | 3,561,749 | T→A | 2.6% | D25V (GAT→GTT) | glpE ← | thiosulfate:cyanide sulfurtransferase (rhodanese) |
| RA | 3,577,176 | T→A | 2.7% | E139V (GAA→GTA) | gntK ← | gluconate kinase 2 |
| RA | 3,589,827 | C→G | 3.2% | G67A (GGC→GCC) | ugpE ← | sn‑glycerol‑3‑phosphate ABC transporter permease |
| RA | 3,810,323 | G→A | 2.5% | intergenic (+20/+19) | coaD → / ← mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,875,524 | G→T | 8.6% | V30F (GTT→TTT) | yidX → | putative lipoprotein |
| RA | 3,875,537 | C→A | 7.5% | A34E (GCA→GAA) | yidX → | putative lipoprotein |
| RA | 3,876,894 | T→G | 5.1% | T20P (ACC→CCC) | yidA ← | sugar phosphate phosphatase |
| RA | 3,997,309:1 | +A | 2.5% | coding (128/717 nt) | yigB → | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase, pyrimidine phosphatase, riboflavin synthesis |
| JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,295,833 | T→C | 9.2% | intergenic (+40/+604) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,059 | C→T | 6.6% | intergenic (+266/+378) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,154 | T→C | 12.4% | intergenic (+361/+283) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,189 | A→G | 39.2% | intergenic (+396/+248) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,190 | A→C | 40.3% | intergenic (+397/+247) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,949 | A→G | 5.1% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,089 | T→G | 9.1% | intergenic (‑347/+311) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,142 | T→C | 11.0% | intergenic (‑400/+258) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,489,391 | Δ1 bp | 2.8% | coding (674/1503 nt) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,540,530 | Δ1 bp | 2.9% | intergenic (‑1028/‑428) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,593,336 | Δ1 bp | 3.4% | intergenic (+23/+26) | tsr → / ← lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter |
| RA | 4,593,339 | A→T | 3.4% | intergenic (+26/+23) | tsr → / ← lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter |
| RA | 4,593,341 | A→T | 3.4% | intergenic (+28/+21) | tsr → / ← lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter |
| RA | 4,593,343:1 | +C | 3.4% | intergenic (+30/+19) | tsr → / ← lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter |
| RA | 4,621,614 | C→T | 2.5% | intergenic (+11/‑156) | deoD → / → yjjJ | purine nucleoside phosphorylase 1, nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2533708 | 2536446 | 2739 | 82 [81] | [77] 86 | ptsH–[pdxK] | ptsH, ptsI, crr, [pdxK] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 176 (1.040) | 99/510 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 15 (0.090) | 14/492 | NT | NA | coding (339/366 nt) coding (16/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | NC_000913 | = 381743 | NA (NA) | coding (70/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913 | 847204 = | 132 (0.780) | 4 (0.020) | 4/492 | NT | 3.1% | intergenic (‑85/+54) | glnP/glnH | glutamine transporter subunit/glutamine transporter subunit |
| ? | NC_000913 | 847225 = | 122 (0.750) | intergenic (‑106/+33) | glnP/glnH | glutamine transporter subunit/glutamine transporter subunit | |||||
| * | ? | NC_000913 | = 907278 | 149 (0.880) | 4 (0.020) | 4/496 | NT | 2.9% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | NC_000913 | = 907329 | 124 (0.750) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | NC_000913 | 1207790 = | 65 (0.380) | 75 (0.470) | 54/478 | NT | 51.0% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 83 (0.520) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 61 (0.360) | 56 (0.350) | 45/478 | NT | 44.4% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 83 (0.520) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 3 (0.020) | 189 (1.120) | 105/510 | NT | 98.4% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 1 (0.010) | 125 (0.750) | 75/502 | NT | 99.6% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1830059 | 125 (0.740) | 4 (0.020) | 4/496 | NT | 3.1% | coding (707/1035 nt) | astA | arginine succinyltransferase |
| ? | NC_000913 | = 1830065 | 131 (0.800) | coding (701/1035 nt) | astA | arginine succinyltransferase | |||||
| * | ? | NC_000913 | = 1946034 | 134 (0.790) | 4 (0.020) | 4/494 | NT | 3.1% | intergenic (‑58/+81) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
| ? | NC_000913 | = 1946036 | 124 (0.760) | intergenic (‑60/+79) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 120 (0.710) | 69/510 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 137 (0.810) | 79/510 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 2275830 = | 173 (1.020) | 8 (0.050) | 8/494 | NT | 4.6% | coding (560/1026 nt) | yejE | microcin C ABC transporter permease |
| ? | NC_000913 | 2275866 = | 162 (0.990) | coding (596/1026 nt) | yejE | microcin C ABC transporter permease | |||||
| * | ? | NC_000913 | 2288917 = | NA (NA) | 142 (0.840) | 88/510 | NT | 95.3% | intergenic (‑5/+146) | yejO/insH1 | pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator |
| ? | NC_000913 | 3526447 = | 7 (0.040) | intergenic (‑300/‑20) | nudE/yrfF | adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | = 2290110 | NA (NA) | 190 (1.130) | 92/508 | NT | 96.5% | intergenic (‑31/+2) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system |
| ? | NC_000913 | = 3526451 | 7 (0.040) | intergenic (‑304/‑16) | nudE/yrfF | adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | = 2713827 | 172 (1.020) | 6 (0.040) | 6/488 | NT | 3.8% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713906 | 141 (0.870) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 2796363 = | 137 (0.810) | 4 (0.020) | 4/490 | NT | 2.9% | coding (422/450 nt) | ygaU | uncharacterized protein |
| ? | NC_000913 | 2796384 = | 136 (0.840) | coding (401/450 nt) | ygaU | uncharacterized protein | |||||
| * | ? | NC_000913 | = 2972362 | 141 (0.830) | 8 (0.050) | 8/510 | NT | 5.3% | coding (768/1041 nt) | tas | putative NADP(H)‑dependent aldo‑keto reductase |
| ? | NC_000913 | 2977089 = | 145 (0.860) | coding (493/1032 nt) | galR | galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor | |||||
| * | ? | NC_000913 | = 3220244 | 159 (0.940) | 5 (0.030) | 5/490 | NT | 3.2% | coding (753/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 3220396 | 149 (0.920) | coding (905/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | 3810311 = | NA (NA) | 4 (0.020) | 4/492 | NT | NA | noncoding (1/22 nt) | REP274 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP274 (repetitive extragenic palindromic) element, contains 1 REP sequences |
| ? | NC_000913 | 3810333 = | NA (NA) | intergenic (+30/+9) | coaD/mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||
| * | ? | NC_000913 | 3845530 = | 142 (0.840) | 134 (0.830) | 80/490 | NT | 46.3% | coding (1568/1767 nt) | adeD | cryptic adenine deaminase |
| ? | NC_000913 | = 3992759 | 175 (1.080) | coding (1608/2547 nt) | cyaA | adenylate cyclase | |||||
| * | ? | NC_000913 | 4295831 = | NA (NA) | 18 (0.130) | 10/432 | NT | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296395 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4593325 = | NA (NA) | 5 (0.030) | 5/488 | NT | NA | intergenic (+12/+37) | tsr/lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter |
| ? | NC_000913 | 4593355 = | NA (NA) | intergenic (+42/+7) | tsr/lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter | |||||
| * | ? | NC_000913 | 4614258 = | NA (NA) | 4 (0.020) | 4/490 | NT | NA | noncoding (1/388 nt) | REP352 (repetitive extragenic palindromic) element, contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element, contains 8 REP sequences |
| ? | NC_000913 | = 4614661 | NA (NA) | intergenic (+400/+20) | yjjV/yjjW | putative DNase/putative pyruvate formate lyase activating enzyme | |||||