mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 12,484 | C→A | 14.4% | Q108K (CAG→AAG) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 37,255 | A→C | 26.1% | G190G (GGT→GGG) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 60,690 | C→T | 12.2% | E859K (GAA→AAA) | rapA ← | RNA polymerase remodeling/recycling factor ATPase, RNA polymerase‑associated, ATP‑dependent RNA translocase |
| RA | 103,873 | G→C | 2.6% | R240P (CGG→CCG) | ftsQ → | divisome assembly protein, membrane anchored protein involved in growth of wall at septum |
| RA | 175,537 | T→G | 21.0% | V144G (GTG→GGG) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 213,587 | T→G | 17.7% | G419G (GGT→GGG) | tilS → | tRNA(Ile)‑lysidine synthetase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 261,631 | C→A | 6.9% | L43L (CTC→CTA) | proA → | gamma‑glutamylphosphate reductase |
| RA | 298,960 | A→C | 8.4% | Y659D (TAT→GAT) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 342,510 | C→G | 12.2% | intergenic (+3/‑374) | yahJ → / → yahK | putative metallo‑dependent hydrolase domain deaminase/broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing |
| RA | 360,362 | T→G | 26.9% | V124G (GTG→GGG) | cynX → | putative cyanate transporter |
| RA | 422,725 | Δ1 bp | 3.1% | coding (208/1815 nt) | malZ → | maltodextrin glucosidase |
| RA | 425,249 | T→G | 10.5% | V80G (GTG→GGG) | queA → | S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase |
| RA | 429,830 | T→G | 21.2% | V109G (GTG→GGG) | secF → | SecYEG protein translocase auxillary subunit |
| RA | 458,189 | A→G | 14.8% | D255G (GAT→GGT) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 458,195 | T→G | 13.4% | V257G (GTG→GGG) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 467,118 | T→C | 16.7% | G65G (GGA→GGG) | ybaE ← | putative ABC transporter periplasmic binding protein |
| RA | 489,597 | T→G | 12.4% | V1021G (GTG→GGG) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| RA | 760,032 | A→C | 17.7% | T443P (ACC→CCC) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 766,690 | T→C | 31.6% | L236P (CTC→CCC) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 770,523 | A→C | 11.7% | H849P (CAC→CCC) | mngB → | alpha‑mannosidase |
| RA | 776,058 | T→G | 10.3% | G70G (GGT→GGG) | tolR → | membrane spanning protein in TolA‑TolQ‑TolR complex |
| RA | 794,938 | C→T | 11.3% | intergenic (+16/‑151) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein, chlorate resistance protein |
| RA | 811,721 | T→G | 30.6% | V67G (GTG→GGG) | bioC → | malonyl‑ACP O‑methyltransferase, SAM‑dependent |
| RA | 830,865 | A→G | 19.8% | intergenic (‑222/‑7) | ybiH ← / → rhlE | DUF1956 domain‑containing tetR family putative transcriptional regulator/ATP‑dependent RNA helicase |
| RA | 848,619 | A→T | 8.4% | I98N (ATC→AAC) | dps ← | Fe‑binding and storage protein, stress‑inducible DNA‑binding protein |
| RA | 861,951 | T→G | 13.1% | H219P (CAC→CCC) | ybiW ← | putative pyruvate formate lyase |
| RA | 921,011 | T→G | 27.7% | V222G (GTG→GGG) | macB → | macrolide ABC transporter peremase/ATPase |
| RA | 1,050,039 | A→C | 3.8% | T69T (ACA→ACC) S5R (AGC→CGC) |
insA → insB1 → |
IS1 repressor TnpA IS1 transposase B |
| RA | 1,058,486 | T→C | 19.8% | S135P (TCG→CCG) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,065,745 | A→G | 19.3% | E54G (GAG→GGG) | agp → | glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,103,169 | Δ1 bp | 4.8% | coding (28/651 nt) | csgD ← | csgBAC operon transcriptional regulator |
| RA | 1,130,037 | G→T | 17.5% | A31E (GCA→GAA) | flgM ← | anti‑sigma factor for FliA (sigma 28) |
| RA | 1,149,812 | G→T | 16.1% | V29F (GTC→TTC) | fabD → | malonyl‑CoA‑[acyl‑carrier‑protein] transacylase |
| JC | 1,195,194 | Δ3 bp | 8.2% | coding (72‑74/1251 nt) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,196,131 | G→A | 20.0% | A337T (GCC→ACC) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,196,305 | C→T | 48.2% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,378,289 | A→C | 11.9% | T136P (ACT→CCT) | ycjT → | putative family 65 glycosyl hydrolase |
| RA | 1,406,283 | T→G | 21.5% | V102G (GTG→GGG) | smrA → | DNA endonuclease |
| RA | 1,425,607 | G→T | 10.5% | L77L (CTG→CTT) | ynaK → | Rac prophage, conserved protein |
| RA | 1,435,725 | C→A | 12.3% | intergenic (‑106/+35) | uspF ← / ← ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| RA | 1,478,149 | A→G | 12.5% | S177G (AGC→GGC) | ynbA → | inner membrane protein |
| RA | 1,530,890 | A→T | 5.8% | pseudogene (305/738 nt) | yncI → | pseudogene |
| RA | 1,616,800 | G→A | 14.6% | V346V (GTG→GTA) | yneK → | uncharacterized protein |
| RA | 1,698,039 | A→C | 11.5% | M1G (GTG→GGG) † | hdhA ← | 7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent |
| RA | 1,809,524 | A→C | 12.9% | T49P (ACC→CCC) | yniC → | 2‑deoxyglucose‑6‑P phosphatase |
| RA | 1,825,257 | C→T | 9.9% | Q123Q (CAG→CAA) | spy ← | periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| RA | 2,126,514 | T→C | 15.9% | E226G (GAG→GGG) | wcaG ← | bifunctional GDP‑fucose synthetase: GDP‑4‑dehydro‑6‑deoxy‑D‑mannose epimerase/ GDP‑4‑dehydro‑6‑L‑deoxygalactose reductase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,193,253 | T→G | 9.9% | Y305S (TAC→TCC) | mrp ← | antiporter inner membrane protein |
| RA | 2,207,318 | A→T | 13.0% | L542F (TTA→TTT) | yehM → | uncharacterized protein |
| RA | 2,216,207 | T→A | 14.9% | I90F (ATT→TTT) | yehW ← | putative ABC transporter permease |
| RA | 2,274,347 | T→G | 29.8% | G57G (GGT→GGG) | yejB → | microcin C ABC transporter permease |
| RA | 2,303,241 | A→G | 21.0% | S85S (TCT→TCC) | napF ← | ferredoxin‑type protein, role in electron transfer to periplasmic nitrate reductase NapA |
| RA | 2,525,305 | G→T | 13.5% | E61* (GAA→TAA) | yfeN → | putative outer membrane protein |
| RA | 2,726,615 | A→C | 31.7% | noncoding (2568/2904 nt) | rrlG ← | 23S ribosomal RNA of rrnG operon |
| RA | 2,745,095 | G→C | 12.8% | G81G (GGC→GGG) | trmD ← | tRNA m(1)G37 methyltransferase, SAM‑dependent |
| JC | 2,765,454 | (TATGGCAC)6→5 | 3.5% | intergenic (‑303/+50) | yfjL ← / ← yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage, uncharacterized protein |
| RA | 2,826,478 | T→C | 18.3% | I30T (ATC→ACC) | srlE → | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| RA | 2,840,287 | G→T | 13.7% | V256L (GTG→TTG) | ascF → | cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,849,511 | T→G | 23.1% | T113P (ACC→CCC) | hycB ← | hydrogenase 3, Fe‑S subunit |
| RA | 2,922,968 | A→C | 15.2% | G5G (GGT→GGG) | yqcA ← | short‑chain flavodoxin, FMN‑binding |
| RA | 2,950,171 | A→G | 20.5% | E311G (GAG→GGG) | argA → | amino acid N‑acetyltransferase and inactive acetylglutamate kinase |
| RA | 3,006,048 | G→A | 10.2% | intergenic (‑264/‑212) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| RA | 3,054,920 | T→G | 15.9% | T175P (ACC→CCC) | ygfB ← | UPF0149 family protein |
| RA | 3,070,427 | A→G | 11.7% | A272A (GCT→GCC) | fbaA ← | fructose‑bisphosphate aldolase, class II |
| RA | 3,090,128 | A→C | 19.4% | T126P (ACC→CCC) | yggI → | Zn‑dependent metalloprotease‑related protein |
| RA | 3,135,439 | T→G | 13.2% | T311P (ACC→CCC) | pitB ← | phosphate transporter |
| RA | 3,206,436 | G→A | 22.8% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,475 | T→A | 17.8% | S5R (AGT→AGA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,216,973 | T→G | 18.8% | V66G (GTG→GGG) | yqjI → | PadR family putative transcriptional regulator |
| RA | 3,217,528 | T→C | 10.6% | intergenic (+128/+26) | yqjI → / ← aer | PadR family putative transcriptional regulator/fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| RA | 3,251,683 | A→G | 11.6% | E221G (GAG→GGG) | yqjG → | putative S‑transferase |
| RA | 3,266,745 | T→C | 10.2% | I107V (ATT→GTT) | tdcA ← | tdc operon transcriptional activator |
| RA | 3,277,498 | T→G | 16.4% | V55G (GTG→GGG) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,277,507 | A→G | 13.3% | E58G (GAG→GGG) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,280,463 | T→A | 16.4% | C83* (TGT→TGA) | agaV → | N‑acetylgalactosamine‑specific enzyme IIB component of PTS |
| RA | 3,289,008 | C→A | 9.0% | S66* (TCA→TAA) | yraJ → | putative outer membrane protein |
| RA | 3,289,057 | G→A | 12.3% | L82L (CTG→CTA) | yraJ → | putative outer membrane protein |
| RA | 3,289,076 | C→A | 18.2% | Q89K (CAG→AAG) | yraJ → | putative outer membrane protein |
| RA | 3,293,130 | A→T | 8.4% | H68Q (CAT→CAA) | rsmI ← | 16S rRNA C1402 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 3,293,685 | T→C | 12.1% | A96A (GCT→GCC) | lpoA → | OM lipoprotein stimulator of MrcA transpeptidase |
| RA | 3,296,179 | A→T | 10.1% | I125F (ATT→TTT) | diaA → | DnaA initiator‑associating factor for replication initiation |
| RA | 3,364,402 | G→A | 11.9% | R533K (AGA→AAA) | yhcD → | putative outer membrane fimbrial subunit usher protein |
| RA | 3,429,965 | A→C | 11.5% | C19W (TGT→TGG) | yrdB ← | DUF1488 family protein |
| RA | 3,499,649 | G→T | 15.9% | intergenic (+36/‑259) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,514,936 | T→G | 11.6% | H41P (CAC→CCC) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 3,532,541 | A→T | 10.4% | intergenic (‑104/‑275) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,532,593 | C→A | 13.8% | intergenic (‑156/‑223) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,560,493 | G→A | 8.0% | pseudogene (111/149 nt) | glpR ← | pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon |
| RA | 3,662,718 | T→G | 13.2% | V769G (GTG→GGG) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,665,631 | G→A | 10.4% | S60L (TCA→TTA) | gadX ← | acid resistance regulon transcriptional activator, autoactivator |
| RA | 3,665,651 | G→A | 19.8% | F53F (TTC→TTT) | gadX ← | acid resistance regulon transcriptional activator, autoactivator |
| RA | 3,665,654 | T→A | 14.7% | V52V (GTA→GTT) | gadX ← | acid resistance regulon transcriptional activator, autoactivator |
| RA | 3,665,706 | A→C | 21.0% | V35G (GTT→GGT) | gadX ← | acid resistance regulon transcriptional activator, autoactivator |
| RA | 3,671,664 | A→C | 10.5% | V77G (GTG→GGG) | yhjB ← | putative DNA‑binding transcriptional response regulator |
| RA | 3,755,362 | A→C | 13.8% | G383G (GGT→GGG) | aldB ← | aldehyde dehydrogenase B |
| RA | 3,757,531 | G→A | 14.0% | S99F (TCT→TTT) | yiaY ← | L‑threonine dehydrogenase |
| RA | 3,760,381 | T→C | 19.0% | S290G (AGT→GGT) | selA ← | selenocysteine synthase |
| RA | 3,765,450 | T→G | 19.5% | V1090G (GTG→GGG) | rhsA → | Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,820,993 | A→C | 9.0% | G59G (GGT→GGG) | ligB ← | DNA ligase, NAD(+)‑dependent |
| RA | 3,830,350 | T→A | 19.1% | intergenic (+15/‑106) | xanP → / → yicH | xanthine permease/putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,838,901 | C→T | 12.2% | L219L (CTG→TTG) | yicL → | EamA family inner membrane putative transporter |
| RA | 3,838,946 | A→T | 9.2% | S234C (AGT→TGT) | yicL → | EamA family inner membrane putative transporter |
| RA | 3,860,855 | A→C | 11.0% | T192P (ACT→CCT) | yidL → | AraC family putative transcriptional regulator |
| RA | 3,891,532 | A→C | 9.7% | intergenic (+50/‑82) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,895,215 | T→A | 16.2% | *189K (TAA→AAA) | chrR → | chromate reductase, Class I, flavoprotein |
| RA | 3,996,585 | T→G | 13.9% | G100G (GGT→GGG) | xerC → | site‑specific tyrosine recombinase |
| JC | 4,001,644 | Δ5 bp | 95.7% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,016,069 | A→G | 15.5% | S34P (TCT→CCT) | ysgA ← | putative carboxymethylenebutenolidase |
| RA | 4,019,671 | A→C | 6.8% | T17P (ACC→CCC) | ubiJ → | aerobic ubiquinone synthesis protein, SCP2 family protein |
| RA | 4,029,689 | T→G | 11.2% | T428P (ACT→CCT) | fadB ← | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 4,043,013 | A→G | 15.6% | G200G (GGA→GGG) | srkA → | Cpx stress response Thr/Ser protein kinase, MazF antagonist protein |
| RA | 4,065,579 | T→A | 14.8% | T63S (ACC→TCC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,065,595 | C→A | 14.5% | L57L (CTG→CTT) | yihO ← | putative sulphoquinovose importer |
| RA | 4,065,603 | T→A | 15.3% | I55F (ATC→TTC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,093,146 | G→T | 17.1% | Q98K (CAA→AAA) | rhaM ← | L‑rhamnose mutarotase |
| RA | 4,093,153 | G→C | 14.2% | S95R (AGC→AGG) | rhaM ← | L‑rhamnose mutarotase |
| RA | 4,096,768 | T→C | 10.6% | E227G (GAG→GGG) | rhaB ← | rhamnulokinase |
| RA | 4,099,982 | G→C | 9.9% | C181W (TGC→TGG) | rhaT ← | L‑rhamnose:proton symporter |
| RA | 4,103,632 | A→C | 15.8% | V448G (GTG→GGG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,107,591 | C→G | 10.0% | A14G (GCG→GGG) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,109,470 | A→C | 2.9% | N213T (AAC→ACC) | sbp → | sulfate transporter subunit |
| RA | 4,150,395 | T→A | 11.6% | intergenic (‑131/+51) | eptC ← / ← ppc | LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,217,359 | T→G | 14.9% | G84G (GGT→GGG) | aceA → | isocitrate lyase |
| RA | 4,219,538 | C→T | 6.5% | A315V (GCG→GTG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,241,800 | C→A | 14.1% | A152S (GCG→TCG) | xylE ← | D‑xylose transporter |
| RA | 4,241,993 | T→G | 14.7% | S87S (TCA→TCC) | xylE ← | D‑xylose transporter |
| RA | 4,242,021 | C→A | 11.7% | C78F (TGC→TTC) | xylE ← | D‑xylose transporter |
| RA | 4,280,558 | C→T | 15.4% | L194F (CTC→TTC) | yjcE → | putative cation/proton antiporter |
| RA | 4,289,063 | T→C | 4.3% | I434T (ATC→ACC) | nrfA → | nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,297,511 | A→C | 10.3% | G619G (GGT→GGG) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,300,841 | A→G | 11.2% | L64P (CTC→CCC) | mdtP ← | outer membrane factor of efflux pump |
| RA | 4,305,821 | T→C | 8.0% | S260G (AGC→GGC) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,366,216 | T→G | 13.4% | T187P (ACT→CCT) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,449,046 | T→G | 26.2% | intergenic (+3/+77) | chpB → / ← ppa | toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
| RA | 4,594,551 | C→G | 21.6% | R58P (CGC→CCC) | lgoT ← | putative L‑galactonate:H+ symporter |
| RA | 4,617,667 | A→G | 18.5% | E115G (GAG→GGG) | deoC → | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| RA | 4,621,987 | C→G | 10.3% | A73G (GCG→GGG) | yjjJ → | putative protein kinase |
| RA | 4,638,812:1 | +G | 2.9% | coding (634/1353 nt) | creD → | inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4233749 | 4235408 | 1660 | 24 [23] | [23] 26 | pgi | pgi |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225739 = | 173 (1.790) | 9 (0.100) +ACTTCA |
3/420 | NT | 5.7% | intergenic (+164/‑20) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 4037482 | 133 (1.370) | intergenic (+148/‑36) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 85 (0.880) | 58/432 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 279163 = | 106 (1.100) | 60 (0.620) | 5/432 | NT | 42.0% | intergenic (‑2/+15) | afuB/insB1 | pseudogene, CP4‑6 prophage, ferric iron ABC transporter permease gene fragment,Phage or Prophage Related/IS1 transposase B |
| ? | NC_000913 | = 2760084 | 60 (0.620) | coding (1102/1410 nt) | yfjI | CP4‑57 prophage, uncharacterized protein | |||||
| * | ? | NC_000913 | 395867 = | 118 (1.220) | 3 (0.030) | 3/418 | NT | 2.7% | coding (421/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase, penicillin‑binding protein, weak beta‑lactamase |
| ? | NC_000913 | 395897 = | 102 (1.090) | coding (391/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase, penicillin‑binding protein, weak beta‑lactamase | |||||
| * | ? | NC_000913 | 458787 = | 58 (0.600) | 41 (0.430) | 34/426 | NT | 41.8% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 49 (0.510) | 50 (0.530) | 44/424 | NT | 51.0% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 1207790 = | 14 (0.140) | 60 (0.670) | 48/400 | NT | 78.5% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 20 (0.220) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 15 (0.160) | 73 (0.810) | 44/400 | NT | 81.2% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 20 (0.220) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 2 (0.020) | 96 (0.990) | 50/432 | NT | 98.0% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 1 (0.010) | 43 (0.450) | 36/424 | NT | 97.7% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 1 (0.010) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1470336 = | 31 (0.320) | 35 (0.360) | 3/432 | NT | 53.0% | coding (979/1152 nt) | insI1 | IS30 transposase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1698341 = | 87 (0.900) | 3 (0.030) | 3/412 | NT | 3.5% | coding (840/1029 nt) | malI | transcriptional repressor of Mal regulon |
| ? | NC_000913 | 1698398 = | 82 (0.890) | coding (783/1029 nt) | malI | transcriptional repressor of Mal regulon | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 49 (0.530) | 39/416 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 41 (0.420) | 29/432 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 78 (0.810) | 44/432 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 2515612 | NA (NA) | 3 (0.030) | 3/428 | NT | 2.6% | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | NC_000913 | 2536308 = | 113 (1.170) | coding (477/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 4162838 | 128 (1.320) | 4 (0.040) | 3/418 | NT | 3.0% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent, tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162848 | 131 (1.400) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent, tmRNA m(5)U341 methyltransferase | |||||