mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 7,733 | T→G | 16.9% | N76T (AAC→ACC) | yaaJ ← | putative transporter |
| RA | 249,538 | T→G | 14.8% | pseudogene (533/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment, flagellar biosynthesis |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 312,169 | T→G | 11.4% | L20V (TTG→GTG) | ykgL → | uncharacterized protein |
| RA | 337,463 | A→G | 11.0% | E229G (GAG→GGG) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 337,487 | T→C | 12.9% | L237P (CTC→CCC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 337,515 | T→C | 18.5% | D246D (GAT→GAC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 337,540 | A→T | 13.1% | I255F (ATC→TTC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 353,606 | A→G | 15.2% | M301V (ATG→GTG) | prpE → | propionate‑‑CoA ligase |
| RA | 353,673 | A→G | 12.3% | E323G (GAG→GGG) | prpE → | propionate‑‑CoA ligase |
| RA | 357,819 | G→C | 21.1% | A291G (GCG→GGG) | cynR ← | transcriptional activator of cyn operon, autorepressor |
| RA | 375,167 | G→C | 4.0% | intergenic (+286/‑292) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,168 | G→T | 4.9% | intergenic (+287/‑291) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,170 | G→C | 3.5% | intergenic (+289/‑289) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,182 | T→C | 3.2% | intergenic (+301/‑277) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,201:1 | +C | 3.2% | intergenic (+320/‑258) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,202 | T→A | 3.8% | intergenic (+321/‑257) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 421,608 | T→G | 14.6% | V208G (GTG→GGG) | proY → | proline‑specific permease |
| RA | 423,056 | A→G | 12.5% | D180G (GAC→GGC) | malZ → | maltodextrin glucosidase |
| RA | 424,671 | T→G | 14.4% | H83P (CAC→CCC) | acpH ← | acyl carrier protein (ACP) phosphodiesterase, ACP hydrolyase |
| RA | 433,649 | T→G | 29.6% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 509,371 | A→C | 13.9% | V670G (GTG→GGG) | copA ← | copper transporter |
| RA | 599,612 | T→G | 19.3% | V300G (GTG→GGG) | cusA → | copper/silver efflux system, membrane component |
| RA | 630,153 | T→G | 13.2% | V87G (GTG→GGG) | cstA → | carbon starvation protein involved in peptide utilization, APC peptide transporter family protein |
| RA | 732,848 | T→G | 13.1% | V1089G (GTG→GGG) | rhsC → | Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor |
| RA | 780,661 | A→T | 3.3% | intergenic (+32/‑104) | lysT → / → valT | tRNA‑Lys/tRNA‑Val |
| RA | 780,677 | G→C | 2.7% | intergenic (+48/‑88) | lysT → / → valT | tRNA‑Lys/tRNA‑Val |
| RA | 989,943 | T→G | 26.5% | S138S (TCA→TCC) ‡ | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 989,945 | A→G | 30.2% | S138P (TCA→CCA) ‡ | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 989,953 | C→G | 9.3% | R135P (CGC→CCC) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 1,196,305 | C→T | 93.7% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,270,320 | A→G | 4.0% | I9T (ATT→ACT) | ldrC ← | toxic polypeptide, small |
| RA | 1,271,865 | G→T | 19.6% | intergenic (‑16/‑254) | chaA ← / → chaB | calcium/sodium:proton antiporter/cation transport regulator |
| RA | 1,364,905 | T→G | 14.5% | V225G (GTG→GGG) | puuB → | gamma‑glutamylputrescine oxidoreductase |
| RA | 1,375,048 | T→A | 3.6% | I29N (ATC→AAC) | ycjQ → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,466,868 | C→A | 3.7% | pseudogene (1477/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,532,638 | A→G | 3.1% | K275E (AAA→GAA) | ydcC → | H repeat‑associated putative transposase |
| RA | 1,542,110 | A→G | 26.9% | S161P (TCC→CCC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,553,994 | T→G | 15.9% | D559A (GAC→GCC) | maeA ← | malate dehydrogenase, decarboxylating, NAD‑requiring, malic enzyme |
| RA | 1,705,741 | G→T | 4.6% | intergenic (+51/‑26) | ydgK → / → rsxA | DUF2569 family inner membrane protein/SoxR iron‑sulfur cluster reduction factor component, inner membrane protein of electron transport complex |
| RA | 1,708,751 | A→G | 9.1% | E611E (GAA→GAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,805 | T→C | 16.3% | R629R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,715,715 | G→C | 2.9% | H59D (CAT→GAT) | pdxY ← | pyridoxamine kinase |
| RA | 1,888,554 | T→C | 7.1% | E398G (GAA→GGA) | fadD ← | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,936,308 | C→T | 34.6% | V3I (GTA→ATA) | zwf ← | glucose‑6‑phosphate 1‑dehydrogenase |
| RA | 2,040,129 | A→C | 21.3% | T218P (ACA→CCA) | yedY → | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,139,187 | T→G | 22.6% | V429G (GTG→GGG) | yegH → | inner membrane protein |
| RA | 2,151,689 | G→T | 28.9% | intergenic (+43/+22) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,151,691 | C→T | 20.4% | intergenic (+45/+20) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,228,227 | G→C | 16.2% | pseudogene (381/1287 nt) | mdtQ ← | pseudogene, putative channel/filament proteins |
| RA | 2,311,315 | Δ1 bp | 6.1% | coding (218/1056 nt) | apbE ← | putative thiamine‑synthetic flavin transferase lipoprotein |
| RA | 2,376,029 | A→C | 12.8% | G263G (GGT→GGG) | menB ← | dihydroxynaphthoic acid synthetase |
| RA | 2,515,738 | A→G | 2.6% | F698S (TTT→TCT) | yfeA ← | putative diguanylate cyclase |
| RA | 2,670,494 | T→C | 10.3% | L36P (CTC→CCC) | hcaF → | 3‑phenylpropionate dioxygenase, small (beta) subunit |
| RA | 2,792,076 | A→C | 15.8% | D269A (GAC→GCC) | gabD → | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| RA | 2,828,504 | T→G | 19.1% | V257G (GTG→GGG) | srlD → | sorbitol‑6‑phosphate dehydrogenase |
| RA | 2,906,012 | Δ1 bp | 3.1% | coding (304/873 nt) | ygcG → | TPM domain protein, putative phosphatase |
| RA | 3,076,190 | T→A | 3.8% | E422V (GAG→GTG) | yggP ← | putative Zn‑binding dehydrogenase |
| RA | 3,126,705:1 | +T | 2.5% | coding (1315/1500 nt) | glcD ← | glycolate oxidase subunit, FAD‑linked |
| RA | 3,153,890 | T→C | 12.6% | Y110Y (TAT→TAC) | yghB → | general envelope maintenance protein, DedA family inner membrane protein, putative multidrug efflux transporter |
| RA | 3,206,436 | G→A | 18.7% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,454 | A→G | 12.3% | intergenic (‑200/‑7) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,467 | A→G | 8.9% | S3G (AGC→GGC) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,469 | C→G | 15.8% | S3R (AGC→AGG) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,474 | G→A | 6.9% | S5N (AGT→AAT) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,475 | T→A | 19.4% | S5R (AGT→AGA) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,482 | C→A | 13.3% | Q8K (CAA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,485 | C→A | 15.0% | Q9K (CAG→AAG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,489 | C→A | 15.3% | A10E (GCA→GAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,504 | C→A | 15.8% | T15K (ACA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,237,901 | T→G | 11.8% | V198G (GTG→GGG) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
| RA | 3,321,542 | A→G | 3.7% | F24L (TTT→CTT) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| RA | 3,440,078 | C→A | 8.7% | R317L (CGC→CTC) | rpoA ← | RNA polymerase, alpha subunit |
| RA | 3,538,416 | T→G | 14.4% | V345G (GTC→GGC) | yhgF → | putative transcriptional accessory protein |
| RA | 3,560,493 | G→A | 4.3% | pseudogene (111/149 nt) | glpR ← | pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon |
| RA | 3,611,447 | T→C | 14.3% | S96G (AGC→GGC) | yhhS ← | putative arabinose efflux transporter |
| RA | 3,697,739 | T→G | 10.8% | V428G (GTG→GGG) | bcsE → | cellulose production protein |
| RA | 3,714,369 | G→T | 6.1% | A675A (GCC→GCA) | bisC ← | biotin sulfoxide reductase |
| RA | 3,745,034 | A→T | 16.1% | I78F (ATT→TTT) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| RA | 3,760,383 | A→C | 31.5% | V289G (GTG→GGG) | selA ← | selenocysteine synthase |
| RA | 3,760,392 | A→C | 15.1% | V286G (GTC→GGC) | selA ← | selenocysteine synthase |
| RA | 3,781,953 | G→C | 12.4% | G203G (GGC→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,781,965 | A→C | 15.1% | G199G (GGT→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,782,010 | A→C | 13.8% | G184G (GGT→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,782,889 | A→C | 13.9% | S258A (TCG→GCG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,782,920 | G→C | 14.2% | G247G (GGC→GGG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,786,541 | T→G | 14.3% | V428G (GTC→GGC) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| RA | 3,812,803 | T→G | 13.1% | V25G (GTG→GGG) | dfp → | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,852,507 | T→G | 10.6% | T93P (ACC→CCC) | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,862,615 | T→A | 9.7% | pseudogene (988/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,660 | T→G | 23.1% | pseudogene (943/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,661 | T→G | 29.2% | pseudogene (942/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,669 | T→A | 19.1% | pseudogene (934/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,673 | C→A | 12.3% | pseudogene (930/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,879,061 | A→T | 15.2% | M353K (ATG→AAG) | gyrB ← | DNA gyrase, subunit B |
| RA | 3,895,555 | T→C | 16.0% | M352V (ATG→GTG) | adeP ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,975,382 | A→C | 11.0% | T80P (ACC→CCC) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| MC JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,004,469 | G→C | 12.0% | C76W (TGC→TGG) | yigI ← | 4HBT thioesterase family protein |
| RA | 4,027,131 | A→G | 17.9% | G202G (GGA→GGG) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,027,145 | C→G | 15.2% | A207G (GCG→GGG) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,027,177 | C→G | 11.9% | R218G (CGT→GGT) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,032,771 | A→G | 11.5% | E94G (GAA→GGA) | yigZ → | UPF0029 family protein |
| RA | 4,130,561 | T→G | 9.6% | V243G (GTG→GGG) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,151,314 | G→C | 10.8% | A595G (GCG→GGG) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,151,328 | T→G | 23.0% | A590A (GCA→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,218,803 | Δ1 bp | 2.6% | coding (209/1737 nt) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,256,052 | G→C | 11.4% | G138G (GGC→GGG) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,256,061 | A→C | 10.5% | R135R (CGT→CGG) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,296,059 | C→T | 7.7% | intergenic (+266/+378) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,267 | T→C | 10.9% | intergenic (+474/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,949 | A→G | 8.1% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,325,989 | G→T | 3.3% | intergenic (‑247/+411) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,089 | T→G | 4.7% | intergenic (‑347/+311) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,331,521 | T→C | 2.5% | I340T (ATC→ACC) | proP → | proline/glycine betaine transporter |
| RA | 4,506,289 | Δ1 bp | 4.8% | coding (1002/1119 nt) | yjhC → | GFO/IDH/MOCA family putative oxidoreductase. NAD(P)‑dependent |
| RA | 4,571,181 | A→C | 18.4% | V132G (GTG→GGG) | yjiR ← | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423865–3424232 | 3424445–3424237 | 6–581 | 39 [33] | [37] 41 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4233768 | 4235453 | 1686 | 51 [37] | [37] 40 | [pgi] | [pgi] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 15391 = | NA (NA) | 15 (0.120) | 14/424 | NT | 48.9% | intergenic (+93/‑54) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| ? | NC_000913 | = 458799 | 16 (0.120) | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 92 (0.710) | 58/432 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 384245 = | 127 (0.980) | 3 (0.020) | 3/418 | NT | 2.6% | coding (372/558 nt) | yaiS | putative PIG‑L family deacetylase |
| ? | NC_000913 | 384272 = | 102 (0.820) | coding (345/558 nt) | yaiS | putative PIG‑L family deacetylase | |||||
| * | ? | NC_000913 | 458787 = | 20 (0.150) | 76 (0.600) | 51/426 | NT | 79.4% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | 458787 = | 20 (0.150) | 17 (0.130) | 15/426 | NT | 46.3% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | = 458799 | 16 (0.120) | 78 (0.620) | 50/424 | NT | 83.2% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 458873 = | 53 (0.410) | 11 (0.090) | 11/432 | NT | 17.2% | intergenic (+173/‑15) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 575785 | NA (NA) | intergenic (‑32/+1) | insH1/nmpC | IS5 transposase and trans‑activator/DLP12 prophage, truncated outer membrane porin (pseudogene),IS, phage, Tn, Phage or Prophage Related, outer membrane porin protein, locus of qsr prophage | |||||
| * | ? | NC_000913 | = 458877 | 62 (0.480) | 19 (0.150) | 19/430 | NT | 23.5% | intergenic (+177/‑11) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 574592 = | NA (NA) | intergenic (‑6/+145) | nmpC/insH1 | DLP12 prophage, truncated outer membrane porin (pseudogene),IS, phage, Tn, Phage or Prophage Related, outer membrane porin protein, locus of qsr prophage/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 1207790 = | 11 (0.090) | 111 (0.930) | 76/400 | NT | 92.4% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 8 (0.070) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 12 (0.090) | 96 (0.800) | 66/400 | NT | 90.9% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 8 (0.070) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 3 (0.020) | 130 (1.010) | 80/432 | NT | 97.7% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 40 (0.320) | 30/424 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1323316 = | 104 (0.800) | 4 (0.030) | 4/418 | NT | 4.1% | coding (97/882 nt) | yciV | PHP domain protein |
| ? | NC_000913 | 1324328 = | 86 (0.690) | coding (231/621 nt) | yciO | putative RNA binding protein | |||||
| * | ? | NC_000913 | 1619302 = | 121 (0.940) | 6 (0.050) | 6/430 | NT | 4.7% | coding (183/435 nt) | marR | transcriptional repressor of multiple antibiotic resistance |
| ? | NC_000913 | = 1651547 | NA (NA) | intergenic (+10/‑4) | insD1/intQ | IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 70 (0.560) | 48/416 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 52 (0.400) | 31/432 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 118 (0.910) | 62/432 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 2021654 | 102 (0.790) | 4 (0.030) | 4/414 | NT | 3.6% | coding (151/366 nt) | fliO | flagellar biosynthesis protein |
| ? | NC_000913 | = 2021673 | 118 (0.950) | coding (170/366 nt) | fliO | flagellar biosynthesis protein | |||||
| * | ? | NC_000913 | 2288917 = | NA (NA) | 3 (0.020) | 3/432 | NT | 5.4% | intergenic (‑5/+146) | yejO/insH1 | pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator |
| ? | NC_000913 | = 3836841 | 53 (0.410) | intergenic (+286/‑111) | yicT/setC | pseudogene/putative arabinose efflux transporter | |||||
| * | ? | NC_000913 | = 2707402 | 111 (0.860) | 4 (0.030) | 4/432 | NT | 3.5% | coding (398/480 nt) | rseC | SoxR iron‑sulfur cluster reduction factor component |
| ? | NC_000913 | = 3187424 | NA (NA) | intergenic (+11/‑1) | insD1/yqiG | IS2 transposase TnpB/pseudogene, fimbrial export usher family,putative membrane, Not classified, putative membrane protein | |||||
| * | ? | NC_000913 | 2796363 = | 98 (0.760) | 4 (0.030) | 4/412 | NT | 4.1% | coding (422/450 nt) | ygaU | uncharacterized protein |
| ? | NC_000913 | 2796384 = | 92 (0.750) | coding (401/450 nt) | ygaU | uncharacterized protein | |||||
| * | ? | NC_000913 | 2875688 = | 117 (0.910) | 4 (0.030) | 4/418 | NT | 3.6% | coding (640/909 nt) | cysD | sulfate adenylyltransferase, subunit 2 |
| ? | NC_000913 | 2875713 = | 102 (0.820) | coding (615/909 nt) | cysD | sulfate adenylyltransferase, subunit 2 | |||||
| * | ? | NC_000913 | = 3493763 | NA (NA) | 4 (0.030) | 4/416 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element, contains 1 REP sequences |
| ? | NC_000913 | = 3493773 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element, contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3653229 | NA (NA) | 26 (0.200) | 20/432 | NT | 44.1% | intergenic (‑32/‑1) | insH1/yhiS | IS5 transposase and trans‑activator/pseudogene |
| ? | NC_000913 | 3836838 = | 33 (0.260) | intergenic (+283/‑114) | yicT/setC | pseudogene/putative arabinose efflux transporter | |||||
| * | ? | NC_000913 | = 4080807 | 232 (1.800) | 6 (0.050) | 5/416 | NT | 2.7% | coding (421/930 nt) | fdhE | formate dehydrogenase formation protein |
| ? | NC_000913 | = 4080856 | 209 (1.680) | coding (372/930 nt) | fdhE | formate dehydrogenase formation protein | |||||
| * | ? | NC_000913 | 4338211 = | 71 (0.550) | 4 (0.030) | 3/416 | NT | 5.0% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | NC_000913 | 4338239 = | 83 (0.670) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||