mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 44,865 | Δ1 bp | 3.7% | coding (686/1287 nt) | fixC → | putative oxidoreductase |
| RA | 65,670 | T→G | 16.1% | A37A (GCA→GCC) | polB ← | DNA polymerase II |
| RA | 249,538 | T→G | 18.2% | pseudogene (533/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment, flagellar biosynthesis |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 311,831 | C→A | 3.3% | intergenic (‑495/‑281) | ecpR ← / → ykgL | putative transcriptional regulator for the ecp operon/uncharacterized protein |
| RA | 343,444 | A→G | 21.0% | G187G (GGA→GGG) | yahK → | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing |
| RA | 357,819 | G→C | 19.2% | A291G (GCG→GGG) | cynR ← | transcriptional activator of cyn operon, autorepressor |
| RA | 357,834 | G→C | 17.7% | A286G (GCG→GGG) | cynR ← | transcriptional activator of cyn operon, autorepressor |
| RA | 414,575 | C→T | 12.4% | E393E (GAG→GAA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 417,533 | T→G | 12.0% | V131G (GTG→GGG) | phoB → | response regulator in two‑component regulatory system with PhoR |
| RA | 421,608 | T→G | 12.1% | V208G (GTG→GGG) | proY → | proline‑specific permease |
| RA | 433,649 | T→G | 22.5% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 529,559 | G→T | 2.8% | pseudogene (60/93 nt) | ylbI → | pseudogene, Rhs family protein |
| RA | 551,236 | T→G | 16.6% | G266G (GGT→GGG) | ybcF → | putative carbonate kinase |
| RA | 602,635 | A→G | 10.9% | E226G (GAG→GGG) | pheP → | phenylalanine transporter |
| RA | 708,681 | T→A | 3.0% | S116R (AGT→AGA) | chiP → | chitoporin, uptake of chitosugars |
| RA | 804,129 | C→T | 3.1% | G209G (GGC→GGT) | ybhJ → | aconitase family protein |
| RA | 811,721 | T→G | 25.7% | V67G (GTG→GGG) | bioC → | malonyl‑ACP O‑methyltransferase, SAM‑dependent |
| RA | 823,339 | T→C | 12.0% | E134G (GAG→GGG) | clsB ← | cardiolipin synthase 2 |
| RA | 827,507 | T→G | 31.8% | D492A (GAC→GCC) | ybhF ← | putative ABC transporter ATPase |
| RA | 954,354 | G→C | 12.9% | A38G (GCG→GGG) | focA ← | formate channel |
| RA | 989,901 | G→T | 16.9% | S152R (AGC→AGA) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 989,945 | A→G | 15.5% | S138P (TCA→CCA) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 1,196,131 | G→A | 21.4% | A337T (GCC→ACC) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,196,305 | C→T | 59.8% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,270,419 | T→C | 5.6% | noncoding (27/68 nt) | rdlC → | sRNA antisense regulator affects LdrC translation, proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| RA | 1,273,419 | Δ1 bp | 3.0% | coding (181/354 nt) | ychN ← | putative sulfur relay protein |
| RA | 1,286,965 | A→G | 7.6% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,974 | C→T | 10.5% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,983 | A→G | 6.6% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,287,037 | C→T | 9.1% | intergenic (+511/+29) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,377,071 | A→C | 17.0% | S80S (TCA→TCC) | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,398,511 | A→T | 3.0% | F38I (TTT→ATT) | uspE ← | stress‑induced protein |
| RA | 1,446,808 | Δ1 bp | 2.9% | coding (476/906 nt) | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,466,201 | T→C | 9.8% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,711 | T→C | 7.0% | pseudogene (1320/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,714 | T→C | 6.4% | pseudogene (1323/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,717 | C→T | 5.2% | pseudogene (1326/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,726 | G→A | 7.8% | pseudogene (1335/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,729 | G→A | 5.3% | pseudogene (1338/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,732 | G→T | 5.5% | pseudogene (1341/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,699,346 | A→G | 3.0% | intergenic (‑166/‑9) | malI ← / → malX | transcriptional repressor of Mal regulon/maltose and glucose‑specific PTS enzyme IIB component and IIC component |
| RA | 1,708,709 | T→C | 10.3% | R597R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,751 | A→G | 12.1% | E611E (GAA→GAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,758 | G→C | 8.6% | E614Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,805 | T→C | 20.8% | R629R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,820 | G→A | 8.7% | K634K (AAG→AAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,844 | C→G | 11.0% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,930 | C→A | 12.6% | P671Q (CCG→CAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,764,648 | T→A | 12.5% | intergenic (‑262/+65) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,040,088 | A→T | 15.5% | Y204F (TAT→TTT) | yedY → | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| RA | 2,049,239 | G→T | 2.7% | L1434F (TTG→TTT) | yeeJ → | putative adhesin |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,149,907 | A→C | 15.3% | V360G (GTG→GGG) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,151,681 | G→T | 23.0% | intergenic (+35/+30) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,151,689 | G→T | 27.3% | intergenic (+43/+22) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,228,254 | A→C | 22.4% | pseudogene (354/1287 nt) | mdtQ ← | pseudogene, putative channel/filament proteins |
| RA | 2,228,270 | A→C | 26.6% | pseudogene (338/1287 nt) | mdtQ ← | pseudogene, putative channel/filament proteins |
| RA | 2,257,488 | A→C | 15.9% | V293G (GTG→GGG) | psuG ← | pseudouridine 5'‑phosphate glycosidase |
| RA | 2,304,796 | T→C | 16.5% | intergenic (+405/+310) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,339,779 | A→G | 13.5% | E72G (GAG→GGG) | ubiG → | bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase/ 2‑octaprenyl‑6‑hydroxy phenol methylase |
| RA | 2,367,380 | G→A | 15.7% | Q104Q (CAG→CAA) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,608,224 | T→G | 16.5% | V437G (GTA→GGA) | hyfF → | hydrogenase 4, membrane subunit |
| RA | 2,807,367 | A→C | 16.8% | T80P (ACC→CCC) | proX → | glycine betaine/proline ABC transporter periplasmic binding protein, cold shock protein |
| RA | 2,859,432 | T→G | 12.4% | V781G (GTG→GGG) | mutS → | methyl‑directed mismatch repair protein |
| RA | 3,019,570 | A→C | 14.5% | T138P (ACA→CCA) | ssnA → | putative chlorohydrolase/aminohydrolase |
| RA | 3,097,509 | A→G | 15.4% | D82G (GAC→GGC) | yggW → | HemN family putative oxidoreductase |
| RA | 3,206,436 | G→A | 18.0% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,456 | T→G | 13.3% | intergenic (‑202/‑5) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,469 | C→G | 12.7% | S3R (AGC→AGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,474 | G→A | 14.1% | S5N (AGT→AAT) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,475 | T→A | 15.9% | S5R (AGT→AGA) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,481 | G→A | 21.5% | K7K (AAG→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,485 | C→A | 22.8% | Q9K (CAG→AAG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,504 | C→A | 18.2% | T15K (ACA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,516 | C→T | 14.1% | A19V (GCT→GTT) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,525,018 | C→A | 11.8% | T717N (ACC→AAC) | mrcA → | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,536,133 | G→C | 11.2% | R150R (CGC→CGG) | ompR ← | response regulator in two‑component regulatory system with EnvZ |
| RA | 3,536,143 | A→G | 9.6% | L147P (CTC→CCC) | ompR ← | response regulator in two‑component regulatory system with EnvZ |
| RA | 3,560,493 | G→A | 7.1% | pseudogene (111/149 nt) | glpR ← | pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon |
| RA | 3,745,559 | A→C | 17.8% | T253P (ACA→CCA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| RA | 3,758,870 | T→G | 8.1% | T331P (ACG→CCG) | selB ← | selenocysteinyl‑tRNA‑specific translation factor |
| RA | 3,760,383 | A→C | 25.9% | V289G (GTG→GGG) | selA ← | selenocysteine synthase |
| RA | 3,760,388 | A→C | 13.1% | S287R (AGT→AGG) | selA ← | selenocysteine synthase |
| RA | 3,780,895 | T→G | 10.4% | V357G (GTG→GGG) | lldD → | L‑lactate dehydrogenase, FMN‑linked |
| RA | 3,781,911 | G→C | 14.7% | G217G (GGC→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,781,965 | A→C | 27.4% | G199G (GGT→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,782,912 | A→C | 15.9% | V250G (GTG→GGG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,783,214 | A→C | 13.5% | G149G (GGT→GGG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,786,541 | T→G | 16.9% | V428G (GTC→GGC) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,840,637 | C→A | 12.3% | G368C (GGT→TGT) | nepI ← | putative transporter |
| RA | 3,862,660 | T→G | 30.4% | pseudogene (943/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,661 | T→G | 18.8% | pseudogene (942/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,669 | T→A | 23.9% | pseudogene (934/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,673 | C→A | 16.1% | pseudogene (930/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,895,551 | A→C | 10.9% | V353G (GTG→GGG) | adeP ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,895,555 | T→C | 13.0% | M352V (ATG→GTG) | adeP ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,947,830 | T→G | 18.5% | N46T (AAC→ACC) | hdfR ← | flhDC operon transcriptional repressor |
| MC JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,023,734 | T→G | 15.8% | V61G (GTA→GGA) | tatD → | quality control of Tat‑exported FeS proteins, Mg‑dependent cytoplasmic DNase |
| RA | 4,025,425:1 | +A | 2.6% | coding (439/1494 nt) | ubiD → | 3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
| RA | 4,040,653 | T→C | 4.3% | intergenic (+18/+252) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,659 | G→T | 5.4% | intergenic (+24/+246) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,660 | G→T | 5.5% | intergenic (+25/+245) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,661 | A→C | 3.7% | intergenic (+26/+244) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,662 | A→C | 5.2% | intergenic (+27/+243) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,668 | G→A | 5.3% | intergenic (+33/+237) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,088,444 | G→T | 9.2% | Q471K (CAA→AAA) | frvR ← | putative frv operon regulator, contains a PTS EIIA domain |
| RA | 4,091,185 | T→G | 24.0% | Y394S (TAC→TCC) | frvB ← | putative PTS enzyme, IIB component/IIC component |
| RA | 4,091,192 | T→A | 18.2% | I392F (ATT→TTT) | frvB ← | putative PTS enzyme, IIB component/IIC component |
| RA | 4,151,304 | T→G | 14.6% | S598S (TCA→TCC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,151,328 | T→G | 22.7% | A590A (GCA→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,219,538 | C→T | 10.2% | A315V (GCG→GTG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,223,613 | A→G | 21.6% | I5I (ATT→ATC) | iclR ← | transcriptional repressor |
| RA | 4,228,214 | T→G | 10.3% | V162G (GTG→GGG) | yjbB → | putative Na+/Pi‑cotransporter |
| RA | 4,295,964 | A→C | 4.9% | intergenic (+171/+473) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,059 | C→T | 8.8% | intergenic (+266/+378) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,267 | T→C | 13.7% | intergenic (+474/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,949 | A→G | 5.9% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,048 | C→T | 3.5% | intergenic (‑306/+352) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,336,867 | G→C | 10.0% | L56V (CTC→GTC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,898 | T→C | 19.5% | G45G (GGA→GGG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,412,891 | T→G | 11.6% | G168G (GGT→GGG) | yjfM → | DUF1190 family protein |
| RA | 4,434,555 | C→G | 5.1% | intergenic (+61/+68) | ytfH → / ← cpdB | DUF24 family HxlR‑type putative transcriptional regulator/2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
| RA | 4,536,214 | G→A | 16.3% | intergenic (+182/+401) | yjhR → / ← nanS | pseudogene, helicase family, putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| RA | 4,571,097 | A→G | 22.0% | L160P (CTC→CCC) | yjiR ← | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| RA | 4,571,181 | A→C | 18.1% | V132G (GTG→GGG) | yjiR ← | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| RA | 4,617,736 | T→G | 9.4% | V138G (GTG→GGG) | deoC → | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423850–3424231 | 3424449–3424237 | 7–600 | 43 [42] | [39] 44 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4233768 | 4235408 | 1641 | 44 [36] | [41] 43 | [pgi] | [pgi] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 176976 | NA (NA) | 4 (0.030) | 4/414 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element, contains 1 REP sequences |
| ? | NC_000913 | = 176979 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element, contains 1 REP sequences | |||||
| * | ? | NC_000913 | 255386 = | 99 (0.790) | 5 (0.040) | 5/420 | NT | 4.3% | coding (331/1458 nt) | pepD | aminoacyl‑histidine dipeptidase (peptidase D) |
| ? | NC_000913 | 255482 = | 129 (1.070) | coding (235/1458 nt) | pepD | aminoacyl‑histidine dipeptidase (peptidase D) | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 107 (0.850) | 64/438 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | = 381473 | 2 (0.020) | 3 (0.030) | 3/416 | NT | 61.2% | coding (123/366 nt) | insC1 | IS2 repressor TnpA |
| ? | NC_000913 | = 381839 | NA (NA) | coding (166/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913 | 458787 = | 80 (0.640) | 39 (0.320) | 31/432 | NT | 33.1% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 71 (0.570) | 59 (0.480) | 43/430 | NT | 45.8% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 458873 = | 90 (0.720) | 5 (0.040) | 5/438 | NT | 5.3% | intergenic (+173/‑15) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 575785 | NA (NA) | intergenic (‑32/+1) | insH1/nmpC | IS5 transposase and trans‑activator/DLP12 prophage, truncated outer membrane porin (pseudogene),IS, phage, Tn, Phage or Prophage Related, outer membrane porin protein, locus of qsr prophage | |||||
| * | ? | NC_000913 | = 458877 | 87 (0.690) | 5 (0.040) | 5/436 | NT | 5.5% | intergenic (+177/‑11) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 574592 = | NA (NA) | intergenic (‑6/+145) | nmpC/insH1 | DLP12 prophage, truncated outer membrane porin (pseudogene),IS, phage, Tn, Phage or Prophage Related, outer membrane porin protein, locus of qsr prophage/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | 1207790 = | 23 (0.180) | 81 (0.700) | 60/406 | NT | 81.7% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 15 (0.130) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 23 (0.180) | 97 (0.830) | 67/406 | NT | 84.2% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 15 (0.130) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1285957 = | 86 (0.690) | 3 (0.020) | 3/422 | NT | 3.5% | coding (109/678 nt) | narI | nitrate reductase 1, gamma (cytochrome b(NR)) subunit |
| ? | NC_000913 | 1286069 = | 84 (0.700) | coding (221/678 nt) | narI | nitrate reductase 1, gamma (cytochrome b(NR)) subunit | |||||
| * | ? | NC_000913 | 1288468 = | 152 (1.210) | 4 (0.030) | 4/432 | NT | 2.8% | coding (157/843 nt) | purU | formyltetrahydrofolate hydrolase |
| ? | NC_000913 | 1288492 = | 133 (1.080) | coding (133/843 nt) | purU | formyltetrahydrofolate hydrolase | |||||
| * | ? | NC_000913 | 1293032 = | 1 (0.010) | 115 (0.920) | 69/438 | NT | 99.1% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 44 (0.360) | 37/430 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1402852 | 90 (0.720) | 3 (0.020) | 3/426 | NT | 3.1% | coding (404/1446 nt) | abgB | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
| ? | NC_000913 | = 1402893 | 103 (0.840) | coding (363/1446 nt) | abgB | p‑aminobenzoyl‑glutamate hydrolase, B subunit | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 56 (0.450) | 40/438 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 98 (0.780) | 66/438 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 2713817 = | 153 (1.220) | 4 (0.030) | 3/416 | NT | 2.9% | coding (924/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | 2713918 = | 125 (1.050) | coding (1025/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 2814161 = | 108 (0.860) | 3 (0.030) | 3/416 | NT | 2.8% | intergenic (+9/+55) | emrB/luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| ? | NC_000913 | 2814185 = | 102 (0.860) | intergenic (+33/+31) | emrB/luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase | |||||
| * | ? | NC_000913 | = 3032400 | 115 (0.920) | 4 (0.030) | 3/424 | NT | 3.4% | coding (1036/1449 nt) | uacT | uric acid permease |
| ? | NC_000913 | = 3032403 | 114 (0.940) | coding (1039/1449 nt) | uacT | uric acid permease | |||||
| * | ? | NC_000913 | = 3620861 | NA (NA) | 3 (0.020) | 3/428 | NT | 2.6% | coding (1671/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3621012 | 114 (0.910) | coding (1822/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3845584 | 137 (1.090) | 4 (0.030) | 4/424 | NT | 3.8% | coding (1622/1767 nt) | adeD | cryptic adenine deaminase |
| ? | NC_000913 | = 3845807 | 69 (0.570) | coding (1360/1392 nt) | uhpT | hexose phosphate transporter | |||||
| * | ? | NC_000913 | = 4040682 | 96 (0.770) | 6 (0.050) | 4/434 | NT | 4.8% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213161 | 143 (1.150) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4162838 | 147 (1.170) | 5 (0.040) | 4/424 | NT | 3.3% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent, tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162848 | 150 (1.240) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent, tmRNA m(5)U341 methyltransferase | |||||