mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 4,530 | T→G | 11.3% | V266G (GTG→GGG) | thrC → | L‑threonine synthase |
| RA | 4,544 | G→T | 10.5% | A271S (GCT→TCT) | thrC → | L‑threonine synthase |
| RA | 67,751 | A→C | 9.6% | V196G (GTT→GGT) | araA ← | L‑arabinose isomerase |
| RA | 200,112 | T→G | 9.5% | Y729D (TAT→GAT) | bamA → | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 284,003 | A→G | 19.0% | E268G (GAG→GGG) | yagF → | CP4‑6 prophage, dehydratase family protein |
| RA | 288,310 | A→C | 18.6% | T508P (ACC→CCC) | yagH → | CP4‑6 prophage, putative xylosidase/arabinosidase |
| RA | 312,384 | T→C | 2.6% | K44R (AAA→AGA) | ykgO ← | RpmJ‑like protein |
| RA | 337,463 | A→G | 13.5% | E229G (GAG→GGG) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 337,495 | A→C | 17.2% | I240L (ATC→CTC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 337,543 | T→C | 13.6% | S256P (TCC→CCC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 360,362 | T→G | 15.4% | V124G (GTG→GGG) | cynX → | putative cyanate transporter |
| RA | 372,640 | T→G | 22.8% | L176V (TTA→GTA) | mhpD → | 2‑keto‑4‑pentenoate hydratase |
| RA | 375,247 | A→G | 4.7% | intergenic (+366/‑212) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,326 | A→G | 3.1% | intergenic (+445/‑133) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 385,818 | T→G | 19.5% | V196G (GTC→GGC) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 395,289 | A→C | 16.0% | G333G (GGT→GGG) | ampH ← | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase, penicillin‑binding protein, weak beta‑lactamase |
| RA | 422,419 | T→C | 3.3% | intergenic (+60/‑99) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| RA | 433,649 | T→G | 18.5% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 477,442 | A→G | 2.9% | L392L (CTT→CTC) | ylaB ← | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 509,371 | A→C | 18.0% | V670G (GTG→GGG) | copA ← | copper transporter |
| RA | 596,493 | C→G | 9.9% | G298G (GGC→GGG) | cusC → | copper/silver efflux system, outer membrane component |
| RA | 630,710 | T→G | 15.1% | W273G (TGG→GGG) | cstA → | carbon starvation protein involved in peptide utilization, APC peptide transporter family protein |
| RA | 691,943 | C→A | 3.0% | M133I (ATG→ATT) | ybeY ← | ssRNA‑specific endoribonuclease, 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R, rRNA transcription antitermination factor |
| RA | 766,690 | T→A | 16.3% | L236H (CTC→CAC) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 799,136 | A→G | 3.1% | H184R (CAT→CGT) | pgl → | 6‑phosphogluconolactonase |
| RA | 827,507 | T→G | 37.8% | D492A (GAC→GCC) | ybhF ← | putative ABC transporter ATPase |
| RA | 891,022 | A→G | 13.7% | E37G (GAG→GGG) | ybjC → | DUF1418 family protein |
| RA | 916,510 | Δ1 bp | 3.2% | coding (38/1659 nt) | ybjD → | putative OLD family ATP‑dependent endonuclease, DUF2813 family protein |
| RA | 1,034,446 | T→C | 2.6% | I398T (ATC→ACC) | hyaB → | hydrogenase 1, large subunit |
| RA | 1,058,263:1 | +A | 3.1% | coding (180/1173 nt) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,191,263 | Δ1 bp | 2.7% | coding (724/1371 nt) | purB ← | adenylosuccinate lyase |
| RA | 1,196,305 | C→T | 23.2% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,286,793 | A→G | 4.5% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,442,240:1 | +A | 2.6% | coding (604/990 nt) | ldhA ← | fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,455,846 | A→C | 8.8% | H228P (CAC→CCC) | paaC → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
| RA | 1,456,702 | T→G | 17.9% | G91G (GGT→GGG) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| RA | 1,465,429 | Δ1 bp | 4.4% | pseudogene (38/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,201 | T→C | 5.4% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,481,881 | A→C | 17.1% | T325P (ACC→CCC) | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,555,498 | C→A | 3.1% | E58* (GAA→TAA) | maeA ← | malate dehydrogenase, decarboxylating, NAD‑requiring, malic enzyme |
| RA | 1,669,930 | T→C | 2.8% | S78P (TCC→CCC) | ynfM → | putative arabinose efflux transporter |
| RA | 1,708,844 | C→G | 5.9% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,744,418 | Δ1 bp | 2.8% | coding (962/1374 nt) | mdtK → | multidrug efflux system transporter |
| RA | 1,939,869 | C→T | 2.7% | E109K (GAG→AAG) | lpxM ← | myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| RA | 2,022,874:1 | +T | 3.0% | coding (259/270 nt) | fliQ → | flagellar biosynthesis protein |
| RA | 2,022,874:2 | +C | 3.0% | coding (259/270 nt) | fliQ → | flagellar biosynthesis protein |
| RA | 2,022,938 | T→C | 2.8% | Y16H (TAC→CAC) | fliR → | flagellar export pore protein |
| RA | 2,040,157 | A→G | 18.4% | K227R (AAG→AGG) | yedY → | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,139,187 | T→G | 14.0% | V429G (GTG→GGG) | yegH → | inner membrane protein |
| RA | 2,151,689 | G→T | 33.0% | intergenic (+43/+22) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,151,691 | C→T | 18.1% | intergenic (+45/+20) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,228,308 | G→C | 12.9% | pseudogene (300/1287 nt) | mdtQ ← | pseudogene, putative channel/filament proteins |
| RA | 2,244,137 | T→G | 15.0% | V77G (GTG→GGG) | yeiG → | S‑formylglutathione hydrolase |
| RA | 2,361,311 | A→T | 13.3% | N34K (AAT→AAA) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,516,532:1 | +C | 3.6% | coding (1299/2190 nt) | yfeA ← | putative diguanylate cyclase |
| RA | 2,530,963 | T→G | 12.3% | H90P (CAC→CCC) | zipA ← | FtsZ stabilizer |
| RA | 2,678,020 | A→C | 13.2% | W114G (TGG→GGG) | yphE ← | putative sugar ABC transporter ATPase |
| RA | 2,748,852 | A→G | 2.7% | E27E (GAA→GAG) | yfjD → | UPF0053 family inner membrane protein |
| RA | 2,817,875 | C→T | 4.8% | intergenic (‑17/+182) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,826,367 | G→A | 14.1% | V180I (GTT→ATT) | srlA → | glucitol/sorbitol‑specific enzyme IIC component of PTS |
| RA | 2,826,383 | C→A | 11.0% | A185E (GCA→GAA) | srlA → | glucitol/sorbitol‑specific enzyme IIC component of PTS |
| RA | 2,828,504 | T→G | 12.6% | V257G (GTG→GGG) | srlD → | sorbitol‑6‑phosphate dehydrogenase |
| RA | 2,839,357 | T→G | 11.8% | intergenic (‑95/‑165) | ascG ← / → ascF | asc operon transcriptional repressor, prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,847,419 | T→C | 11.8% | G607G (GGA→GGG) | hycC ← | hydrogenase 3, membrane subunit |
| RA | 3,080,689 | C→T | 13.5% | A315A (GCG→GCA) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,206,436 | G→A | 22.5% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,454 | A→G | 14.7% | intergenic (‑200/‑7) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,469 | C→G | 19.6% | S3R (AGC→AGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,474 | G→A | 11.4% | S5N (AGT→AAT) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,475 | T→A | 18.6% | S5R (AGT→AGA) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,482 | C→A | 16.7% | Q8K (CAA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,485 | C→A | 18.6% | Q9K (CAG→AAG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,504 | C→A | 20.3% | T15K (ACA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,524 | A→T | 9.4% | T22S (ACC→TCC) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,570,782 | G→T | 2.6% | L179L (CTC→CTA) | glgX ← | glycogen debranching enzyme |
| RA | 3,603,740 | A→C | 11.3% | V168G (GTG→GGG) | ftsY ← | Signal Recognition Particle (SRP) receptor |
| RA | 3,673,890 | Δ1 bp | 2.6% | coding (530/1014 nt) | yhjD → | inner membrane putative BrbK family alternate lipid exporter |
| RA | 3,675,488 | T→G | 17.7% | V235G (GTG→GGG) | yhjE → | putative MFS transporter, membrane protein |
| RA | 3,697,739 | T→G | 15.2% | V428G (GTG→GGG) | bcsE → | cellulose production protein |
| RA | 3,716,988 | T→G | 13.2% | V148G (GTG→GGG) | yiaD → | multicopy suppressor of bamB, outer membrane lipoprotein |
| RA | 3,745,021 | C→T | 16.3% | G73G (GGC→GGT) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| RA | 3,760,383 | A→C | 24.7% | V289G (GTG→GGG) | selA ← | selenocysteine synthase |
| RA | 3,765,291 | T→A | 7.6% | I1037K (ATA→AAA) | rhsA → | Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
| RA | 3,781,953 | G→C | 12.0% | G203G (GGC→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,781,963 | A→C | 13.7% | V200G (GTG→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,781,965 | A→C | 13.6% | G199G (GGT→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,782,916 | G→A | 23.9% | L249L (CTG→TTG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,806,291 | Δ1 bp | 2.7% | coding (776/1125 nt) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase, lipopolysaccharide core biosynthesis protein, lipopolysaccharide glucosyltransferase I |
| RA | 3,806,292 | Δ1 bp | 2.7% | coding (775/1125 nt) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase, lipopolysaccharide core biosynthesis protein, lipopolysaccharide glucosyltransferase I |
| RA | 3,806,293 | Δ1 bp | 2.7% | coding (774/1125 nt) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase, lipopolysaccharide core biosynthesis protein, lipopolysaccharide glucosyltransferase I |
| RA | 3,806,294 | Δ1 bp | 2.7% | coding (773/1125 nt) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase, lipopolysaccharide core biosynthesis protein, lipopolysaccharide glucosyltransferase I |
| RA | 3,806,295 | Δ1 bp | 2.7% | coding (772/1125 nt) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase, lipopolysaccharide core biosynthesis protein, lipopolysaccharide glucosyltransferase I |
| RA | 3,807,258 | Δ1 bp | 2.6% | coding (840/1035 nt) | waaQ ← | lipopolysaccharide core biosynthesis protein |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,830,309 | C→T | 9.0% | L456L (CTG→TTG) | xanP → | xanthine permease |
| RA | 3,830,355 | T→A | 13.2% | intergenic (+20/‑101) | xanP → / → yicH | xanthine permease/putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,862,660 | T→G | 33.5% | pseudogene (943/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,669 | T→A | 24.5% | pseudogene (934/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,670 | C→A | 8.2% | pseudogene (933/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,672 | G→A | 14.7% | pseudogene (931/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,673 | C→A | 10.1% | pseudogene (930/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,878,973 | A→C | 16.1% | R382R (CGT→CGG) | gyrB ← | DNA gyrase, subunit B |
| RA | 3,895,551 | A→C | 9.1% | V353G (GTG→GGG) | adeP ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,895,555 | T→C | 14.5% | M352V (ATG→GTG) | adeP ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,952,814 | A→C | 8.3% | N111T (AAC→ACC) | ilvE → | branched‑chain amino acid aminotransferase |
| MC JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,027,131 | A→G | 20.4% | G202G (GGA→GGG) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,027,145 | C→G | 12.0% | A207G (GCG→GGG) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,160,853 | C→T | 65.4% | intergenic (‑64/‑270) | sthA ← / → fabR | pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,228,163 | A→G | 14.0% | E145G (GAG→GGG) | yjbB → | putative Na+/Pi‑cotransporter |
| RA | 4,256,052 | G→C | 15.2% | G138G (GGC→GGG) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,256,084 | T→C | 11.7% | M128V (ATG→GTG) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,256,149 | T→G | 11.5% | H106P (CAC→CCC) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,296,059 | C→T | 5.7% | intergenic (+266/+378) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,949 | A→G | 4.0% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,325,989 | G→T | 4.2% | intergenic (‑247/+411) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,377,045 | Δ1 bp | 2.5% | coding (170/318 nt) | sugE → | multidrug efflux system protein |
| RA | 4,449,046 | T→G | 14.8% | intergenic (+3/+77) | chpB → / ← ppa | toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
| RA | 4,488,189 | A→G | 13.0% | M291V (ATG→GTG) | lptG → | lipopolysaccharide export ABC permease |
| RA | 4,488,193 | C→G | 10.1% | A292G (GCG→GGG) | lptG → | lipopolysaccharide export ABC permease |
| RA | 4,536,219 | C→A | 23.3% | intergenic (+187/+396) | yjhR → / ← nanS | pseudogene, helicase family, putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 583064 | 583862 | 799 | 58 [55] | [52] 56 | [tfaX]–[appY] | [tfaX], [appY] |
| * | * | ÷ | NC_000913 | 1299420 | 1300753 | 1334 | 57 [48] | [55] 56 | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | * | ÷ | NC_000913 | 3804152 | 3805202 | 1051 | 60 [53] | [55] 62 | waaS–[waaP] | waaS, [waaP] |
| * | * | ÷ | NC_000913 | 4233741 | 4235980 | 2240 | 61 [55] | [55] 56 | pgi–[yjbE] | pgi, [yjbE] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 67363 | 96 (0.690) | 6 (0.050) | 5/408 | NT | 5.6% | coding (975/1503 nt) | araA | L‑arabinose isomerase |
| ? | NC_000913 | = 67394 | 111 (0.840) | coding (944/1503 nt) | araA | L‑arabinose isomerase | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 136 (0.970) | 81/430 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 458787 = | 86 (0.620) | 24 (0.170) | 21/424 | NT | 22.1% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 77 (0.550) | 46 (0.340) | 39/422 | NT | 37.8% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | = 741026 | NA (NA) | 3 (0.020) | 3/416 | NT | NA | noncoding (73/106 nt) | RIP66 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP66 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 741059 | NA (NA) | noncoding (106/106 nt) | RIP66 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP66 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 949215 = | 91 (0.650) | 3 (0.020) | 3/420 | NT | 2.8% | coding (354/909 nt) | ycaN | LysR family putative transcriptional regulator |
| ? | NC_000913 | 949576 = | 118 (0.860) | intergenic (‑8/‑92) | ycaN/ycaK | LysR family putative transcriptional regulator/putative NAD(P)H‑dependent oxidoreductase | |||||
| * | ? | NC_000913 | 1026664 = | 150 (1.070) | 4 (0.030) | 4/416 | NT | 2.7% | coding (352/459 nt) | mgsA | methylglyoxal synthase |
| ? | NC_000913 | 1026694 = | 142 (1.050) | coding (322/459 nt) | mgsA | methylglyoxal synthase | |||||
| * | ? | NC_000913 | 1207790 = | 22 (0.160) | 91 (0.700) | 62/398 | NT | 86.1% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 9 (0.070) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 23 (0.160) | 125 (0.970) | 74/398 | NT | 89.2% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 9 (0.070) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 3 (0.020) | 116 (0.830) | 71/430 | NT | 97.5% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 40 (0.290) | 35/422 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1503511 = | 137 (0.980) | 5 (0.040) | 5/420 | NT | 3.5% | pseudogene (139/432 nt) | insP | pseudogene, IS609 transposase A,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| ? | NC_000913 | 1504443 = | 143 (1.050) | coding (727/1149 nt) | insQ | IS609 transposase B | |||||
| * | ? | NC_000913 | 1543057 = | 105 (0.750) | 4 (0.030) | 4/416 | NT | 3.6% | coding (1004/1389 nt) | narU | nitrate/nitrite transporter |
| ? | NC_000913 | 1544070 = | 113 (0.840) | intergenic (‑10/+314) | narU/yddK | nitrate/nitrite transporter/pseudogene, leucine‑rich protein, putative glycoportein | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 42 (0.310) | 36/414 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 75 (0.540) | 42/430 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 140 (1.000) | 77/430 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 2514275 = | NA (NA) | 105 (0.760) | 68/424 | NT | 66.4% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | NC_000913 | = 2536318 | 54 (0.390) | coding (487/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2515612 | NA (NA) | 110 (0.790) | 62/426 | NT | 69.0% | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | NC_000913 | 2536308 = | 50 (0.360) | coding (477/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2531963 | 138 (0.990) | 4 (0.030) | 3/410 | NT | 2.7% | coding (503/762 nt) | cysZ | sulfate transporter, sulfite inhibited |
| ? | NC_000913 | = 2532165 | 161 (1.210) | coding (705/762 nt) | cysZ | sulfate transporter, sulfite inhibited | |||||
| * | ? | NC_000913 | 2655874 = | 137 (0.980) | 5 (0.040) | 4/422 | NT | 3.3% | coding (483/1284 nt) | pepB | aminopeptidase B |
| ? | NC_000913 | 2656030 = | 156 (1.140) | coding (327/1284 nt) | pepB | aminopeptidase B | |||||
| * | ? | NC_000913 | = 2671660 | 110 (0.790) | 3 (0.020) | 3/418 | NT | 2.6% | coding (438/813 nt) | hcaB | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| ? | NC_000913 | = 2671669 | 119 (0.880) | coding (447/813 nt) | hcaB | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase | |||||
| * | ? | NC_000913 | = 2730106 | NA (NA) | 3 (0.020) | 3/420 | NT | NA | noncoding (1050/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2730630 | NA (NA) | noncoding (526/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 3520733 = | 144 (1.030) | 4 (0.030) | 3/424 | NT | 2.8% | coding (285/405 nt) | hofP | DNA catabolic protein |
| ? | NC_000913 | 3521430 = | 140 (1.020) | coding (18/441 nt) | hofO | DNA catabolic protein | |||||