mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 12,484 | C→A | 20.9% | Q108K (CAG→AAG) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 114,216 | A→G | 10.4% | E258G (GAG→GGG) | guaC → | GMP reductase |
| RA | 249,538 | T→G | 13.0% | pseudogene (533/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment, flagellar biosynthesis |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 275,548 | A→G | 12.1% | E75G (GAG→GGG) | mmuP → | CP4‑6 prophage, putative S‑methylmethionine transporter |
| RA | 284,003 | A→G | 23.3% | E268G (GAG→GGG) | yagF → | CP4‑6 prophage, dehydratase family protein |
| RA | 307,366 | A→T | 2.5% | I656N (ATT→AAT) | ecpC ← | ECP production outer membrane protein |
| RA | 377,474 | C→T | 3.4% | intergenic (+163/+61) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 377,478 | C→T | 2.8% | intergenic (+167/+57) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 377,492 | G→A | 3.2% | intergenic (+181/+43) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 388,233 | A→G | 15.7% | S147G (AGT→GGT) | tauD → | taurine dioxygenase, 2‑oxoglutarate‑dependent |
| RA | 433,649 | T→G | 15.2% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 502,887 | T→A | 9.5% | I118F (ATC→TTC) | ybaL ← | inner membrane putative NAD(P)‑binding transporter |
| RA | 509,371 | A→C | 15.4% | V670G (GTG→GGG) | copA ← | copper transporter |
| RA | 509,421 | A→C | 12.8% | S653R (AGT→AGG) | copA ← | copper transporter |
| RA | 524,899 | A→C | 8.7% | T547P (ACC→CCC) | rhsD → | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor |
| RA | 596,487 | T→A | 11.7% | N296K (AAT→AAA) | cusC → | copper/silver efflux system, outer membrane component |
| RA | 599,579 | T→G | 26.8% | V289G (GTG→GGG) | cusA → | copper/silver efflux system, membrane component |
| RA | 599,589 | A→G | 12.5% | R292R (CGA→CGG) | cusA → | copper/silver efflux system, membrane component |
| RA | 599,612 | T→G | 21.1% | V300G (GTG→GGG) | cusA → | copper/silver efflux system, membrane component |
| RA | 649,766 | T→G | 16.5% | N242T (AAC→ACC) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| RA | 667,132 | A→C | 8.5% | G362G (GGT→GGG) | mrdA ← | penicillin‑binding protein 2, transpeptidase involved in peptidoglycan synthesis |
| RA | 705,630 | G→A | 9.1% | G563S (GGC→AGC) | nagE → | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components |
| RA | 825,141 | T→G | 9.9% | H323P (CAC→CCC) | ybhR ← | putative ABC transporter permease |
| RA | 954,360 | T→A | 11.2% | Y36F (TAT→TTT) | focA ← | formate channel |
| RA | 954,395 | G→A | 10.9% | V24V (GTC→GTT) | focA ← | formate channel |
| RA | 989,945 | A→G | 19.3% | S138P (TCA→CCA) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 997,386 | C→T | 2.8% | A43T (GCC→ACC) | ssuE ← | NAD(P)H‑dependent FMN reductase |
| RA | 1,057,126 | C→G | 9.9% | A289G (GCC→GGC) | torT → | periplasmic sensory protein associated with the TorRS two‑component regulatory system |
| RA | 1,196,305 | C→T | 44.8% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,270,419 | T→C | 2.9% | noncoding (27/68 nt) | rdlC → | sRNA antisense regulator affects LdrC translation, proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| RA | 1,377,689 | T→A | 9.0% | D286E (GAT→GAA) | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,456,663 | A→G | 17.8% | G78G (GGA→GGG) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| RA | 1,456,716 | T→G | 14.8% | V96G (GTC→GGC) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| RA | 1,466,201 | T→C | 9.0% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,210 | G→A | 6.5% | pseudogene (819/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,856 | A→G | 5.9% | pseudogene (1465/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,504,667 | T→G | 19.1% | C317W (TGT→TGG) | insQ → | IS609 transposase B |
| RA | 1,542,110 | A→G | 22.6% | S161P (TCC→CCC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,580,140 | Δ1 bp | 2.7% | coding (651/1158 nt) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,662,004:1 | +C | 2.9% | coding (1449/2424 nt) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,662,004:2 | +A | 2.9% | coding (1449/2424 nt) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,662,004:3 | +C | 2.9% | coding (1449/2424 nt) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,662,004:4 | +A | 2.9% | coding (1449/2424 nt) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,705,890 | G→A | 7.9% | G42R (GGG→AGG) | rsxA → | SoxR iron‑sulfur cluster reduction factor component, inner membrane protein of electron transport complex |
| RA | 1,706,004:1 | +G | 3.8% | coding (238/582 nt) | rsxA → | SoxR iron‑sulfur cluster reduction factor component, inner membrane protein of electron transport complex |
| RA | 1,708,709 | T→C | 11.6% | R597R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,724 | G→A | 8.1% | K602K (AAG→AAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,751 | A→G | 7.4% | E611E (GAA→GAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,766 | C→T | 6.2% | V616V (GTC→GTT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,805 | T→C | 13.1% | R629R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,844 | C→G | 9.2% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,930 | C→A | 9.7% | P671Q (CCG→CAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,717,664 | Δ1 bp | 3.4% | coding (344/657 nt) | pdxH ← | pyridoxine 5'‑phosphate oxidase |
| RA | 1,798,500 | T→G | 10.8% | H148P (CAC→CCC) | pheS ← | phenylalanine tRNA synthetase, alpha subunit |
| RA | 1,828,684 | A→C | 3.4% | L351V (TTA→GTA) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,969,794 | A→C | 10.7% | G397G (GGT→GGG) | tap ← | methyl‑accepting protein IV |
| RA | 2,040,088 | A→T | 13.8% | Y204F (TAT→TTT) | yedY → | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| RA | 2,055,815 | A→C | 12.0% | D252A (GAC→GCC) | amn → | AMP nucleosidase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,147,733 | T→G | 16.3% | G20G (GGT→GGG) | yegD → | Hsp70 chaperone family protein |
| RA | 2,149,907 | A→C | 19.1% | V360G (GTG→GGG) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,151,689 | G→T | 29.3% | intergenic (+43/+22) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,151,691 | C→T | 15.2% | intergenic (+45/+20) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,190,731 | T→C | 2.6% | I60V (ATT→GTT) | yehB ← | putative outer membrane protein |
| RA | 2,304,547 | C→T | 4.5% | intergenic (+156/+559) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,361,335 | A→C | 20.1% | G26G (GGT→GGG) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,510,588 | C→T | 18.2% | R321C (CGC→TGC) | yfeO → | putative ion channel protein |
| RA | 2,510,649 | A→G | 15.0% | E341G (GAG→GGG) | yfeO → | putative ion channel protein |
| RA | 2,521,124 | A→C | 12.3% | noncoding (76/76 nt) | valX → | tRNA‑Val |
| RA | 2,604,988 | G→C | 2.7% | T60T (ACG→ACC) | hyfD → | hydrogenase 4, membrane subunit |
| RA | 2,725,689 | C→G | 4.8% | R19P (CGC→CCC) | kgtP ← | alpha‑ketoglutarate transporter |
| RA | 2,793,673 | T→G | 8.2% | V314G (GTG→GGG) | gabT → | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| RA | 2,807,367 | A→C | 22.4% | T80P (ACC→CCC) | proX → | glycine betaine/proline ABC transporter periplasmic binding protein, cold shock protein |
| RA | 2,826,442 | A→G | 12.0% | E18G (GAG→GGG) | srlE → | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| RA | 2,828,504 | T→G | 12.0% | V257G (GTG→GGG) | srlD → | sorbitol‑6‑phosphate dehydrogenase |
| RA | 2,859,432 | T→G | 10.6% | V781G (GTG→GGG) | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,978,164 | T→A | 14.5% | Y245F (TAT→TTT) | lysA ← | diaminopimelate decarboxylase, PLP‑binding |
| RA | 3,006,559 | T→C | 17.1% | A100A (GCT→GCC) | ygeW → | putative carbamoyltransferase |
| RA | 3,031,775 | A→C | 11.0% | P137P (CCA→CCC) | uacT → | uric acid permease |
| RA | 3,182,585 | C→G | 16.4% | A13G (GCA→GGA) | zupT → | zinc transporter |
| RA | 3,182,599 | G→T | 20.6% | G18C (GGC→TGC) | zupT → | zinc transporter |
| RA | 3,206,436 | G→A | 16.3% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,467 | A→G | 9.6% | S3G (AGC→GGC) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,469 | C→G | 15.9% | S3R (AGC→AGG) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,474 | G→A | 11.2% | S5N (AGT→AAT) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,475 | T→A | 18.9% | S5R (AGT→AGA) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,481 | G→A | 33.0% | K7K (AAG→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,482 | C→A | 14.4% | Q8K (CAA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,485 | C→A | 16.1% | Q9K (CAG→AAG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,489 | C→A | 11.6% | A10E (GCA→GAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,285,875 | C→G | 13.7% | P134A (CCG→GCG) | agaD → | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| RA | 3,351,614 | A→C | 10.1% | G470G (GGT→GGG) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,355,412 | A→C | 10.8% | Q230H (CAA→CAC) | gltB → | glutamate synthase, large subunit |
| RA | 3,370,873 | A→C | 20.2% | G54G (GGT→GGG) | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,392,258 | C→T | 2.7% | intergenic (‑232/+198) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,615,864 | A→C | 20.9% | T209P (ACC→CCC) | nikB → | nickel ABC transporter permease |
| RA | 3,630,765 | Δ1 bp | 2.6% | intergenic (‑164/+202) | yhiI ← / ← yhiJ | putative membrane fusion protein (MFP) of efflux pump/DUF4049 family protein |
| RA | 3,637,183:1 | +C | 3.3% | coding (227/1203 nt) | yhiN ← | putative oxidoreductase |
| RA | 3,731,688 | C→A | 12.8% | Q187K (CAA→AAA) | xylF → | D‑xylose transporter subunit |
| RA | 3,745,396 | A→C | 20.1% | L198F (TTA→TTC) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| RA | 3,760,388 | A→C | 14.0% | S287R (AGT→AGG) | selA ← | selenocysteine synthase |
| RA | 3,781,965 | A→C | 15.0% | G199G (GGT→GGG) | cysE ← | serine acetyltransferase |
| RA | 3,782,886 | G→C | 11.1% | R259G (CGT→GGT) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,782,912 | A→C | 22.0% | V250G (GTG→GGG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,782,920 | G→C | 10.6% | G247G (GGC→GGG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,784,899 | A→C | 11.3% | V39G (GTG→GGG) | yibN ← | putative rhodanese‑related sulfurtransferase |
| RA | 3,786,541 | T→G | 13.6% | V428G (GTC→GGC) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| RA | 3,800,639 | C→T | 3.3% | R109Q (CGG→CAG) | waaY ← | lipopolysaccharide core biosynthesis protein |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,862,660 | T→G | 30.5% | pseudogene (943/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,669 | T→A | 25.8% | pseudogene (934/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,971,105 | T→G | 13.6% | V325G (GTA→GGA) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| MC JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,027,145 | C→G | 15.7% | A207G (GCG→GGG) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,027,169 | G→T | 13.2% | C215F (TGC→TTC) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,094,488 | G→A | 3.9% | intergenic (‑217/+234) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,098,390 | A→C | 19.8% | Y219S (TAC→TCC) | rhaS → | transcriptional activator of rhaBAD and rhaT |
| RA | 4,114,889 | A→C | 12.4% | G230G (GGT→GGG) | glpX ← | fructose 1,6‑bisphosphatase II |
| RA | 4,116,196 | A→C | 13.0% | G342G (GGT→GGG) | glpK ← | glycerol kinase |
| RA | 4,142,657 | C→G | 6.9% | G43G (GGC→GGG) | frwC → | putative enzyme IIC component of PTS |
| RA | 4,145,070 | A→C | 9.6% | Q359H (CAA→CAC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,151,328 | T→G | 17.8% | A590A (GCA→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,160,853 | C→T | 59.8% | intergenic (‑64/‑270) | sthA ← / → fabR | pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB |
| RA | 4,161,138 | C→A | 11.3% | Q6K (CAA→AAA) | fabR → | transcriptional repressor of fabA and fabB |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,228,163 | A→G | 14.4% | E145G (GAG→GGG) | yjbB → | putative Na+/Pi‑cotransporter |
| RA | 4,280,566 | T→G | 13.1% | G196G (GGT→GGG) | yjcE → | putative cation/proton antiporter |
| RA | 4,296,059 | C→T | 7.2% | intergenic (+266/+378) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,267 | T→C | 13.0% | intergenic (+474/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,949 | A→G | 3.4% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,089 | T→G | 4.3% | intergenic (‑347/+311) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,289 | G→T | 3.5% | intergenic (‑547/+111) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,329,984 | A→G | 2.8% | A208A (GCA→GCG) | yjcZ → | YjcZ family protein, yhjH motility defect suppressor |
| RA | 4,342,036 | A→C | 16.3% | D42A (GAC→GCC) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,342,200 | A→G | 10.4% | T97A (ACT→GCT) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,412,891 | T→G | 11.3% | G168G (GGT→GGG) | yjfM → | DUF1190 family protein |
| RA | 4,421,193 | A→G | 14.4% | S405G (AGT→GGT) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
| RA | 4,430,024 | C→G | 14.1% | P54A (CCG→GCG) | cycA → | D‑alanine/D‑serine/glycine transporter |
| RA | 4,577,605 | G→T | 3.4% | H119N (CAT→AAT) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423826–3424231 | 3424466–3424239 | 9–641 | 69 [64] | [64] 75 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4233739 | 4235453 | 1715 | 66 [65] | [60] 69 | pgi | pgi |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 154 (0.980) | 87/430 | NT | 98.7% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 2 (0.010) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | = 366099 | 157 (1.000) | 4 (0.030) | 3/408 | NT | 2.5% | coding (207/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | = 366105 | 158 (1.060) | coding (201/3075 nt) | lacZ | beta‑D‑galactosidase | |||||
| * | ? | NC_000913 | 458787 = | 106 (0.670) | 45 (0.290) | 39/424 | NT | 30.1% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 95 (0.600) | 69 (0.450) | 54/422 | NT | 42.5% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | = 696506 | 172 (1.090) | 8 (0.060) +45 bp |
3/340 | NT | 5.5% | intergenic (‑2/+36) | glnX/glnV | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | 697057 = | 176 (1.120) | noncoding (77/77 nt) | metT | tRNA‑Met | |||||
| * | ? | NC_000913 | 730302 = | 117 (0.740) | 3 (0.020) | 3/414 | NT | 2.6% | coding (720/4194 nt) | rhsC | Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3619973 = | NA (NA) | coding (783/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 1040547 = | NA (NA) | 5 (0.030) | 5/410 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element, contains 1 REP sequences |
| ? | NC_000913 | 1040579 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
| * | ? | NC_000913 | 1207790 = | 29 (0.180) | 120 (0.830) | 68/398 | NT | 82.8% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 23 (0.160) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 28 (0.180) | 153 (1.050) | 86/398 | NT | 86.2% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 23 (0.160) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 2 (0.010) | 146 (0.930) | 75/430 | NT | 98.6% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 55 (0.360) | 42/422 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1828681 | 105 (0.670) | 5 (0.030) | 5/412 | NT | 4.8% | coding (1054/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | NC_000913 | = 1828695 | 96 (0.640) | coding (1040/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 71 (0.470) | 52/414 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 81 (0.520) | 47/430 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 129 (0.820) | 70/430 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 2290111 | NA (NA) | 11 (0.070) | 10/430 | NT | 7.0% | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system |
| ? | NC_000913 | 2313350 = | 146 (0.930) | intergenic (+176/‑136) | micF/rcsD | sRNA antisense regulator affecting ompF expression, Hfq‑dependent/phosphotransfer intermediate protein in two‑component regulatory system with RcsBC | |||||
| * | ? | NC_000913 | 2514275 = | NA (NA) | 99 (0.640) | 65/424 | NT | 61.4% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | NC_000913 | = 2536318 | 63 (0.400) | coding (487/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2515612 | NA (NA) | 105 (0.670) | 69/426 | NT | 62.0% | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | NC_000913 | 2536308 = | 65 (0.410) | coding (477/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2604987 | 154 (0.980) | 4 (0.030) | 4/412 | NT | 2.6% | coding (179/1440 nt) | hyfD | hydrogenase 4, membrane subunit |
| ? | NC_000913 | = 2604991 | 149 (0.990) | coding (183/1440 nt) | hyfD | hydrogenase 4, membrane subunit | |||||
| * | ? | NC_000913 | 2796363 = | 145 (0.920) | 4 (0.030) | 4/410 | NT | 2.9% | coding (422/450 nt) | ygaU | uncharacterized protein |
| ? | NC_000913 | 2796384 = | 134 (0.890) | coding (401/450 nt) | ygaU | uncharacterized protein | |||||
| * | ? | NC_000913 | 4593325 = | NA (NA) | 5 (0.030) | 5/408 | NT | NA | intergenic (+12/+37) | tsr/lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter |
| ? | NC_000913 | 4593355 = | NA (NA) | intergenic (+42/+7) | tsr/lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter | |||||