mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 58,210:1 | +G | 4.4% | intergenic (+31/‑264) | djlA → / → yabP | membrane‑anchored DnaK co‑chaperone, DNA‑binding protein/pseudogene, pentapeptide repeats‑containing |
| RA | 249,587 | T→G | 13.1% | pseudogene (484/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment, flagellar biosynthesis |
| RA | 256,597 | T→C | 15.4% | V24A (GTC→GCC) | frsA → | fermentation‑respiration switch protein, PTS Enzyme IIA(Glc)‑binding protein, pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 328,824 | T→C | 14.4% | S171G (AGC→GGC) | betI ← | choline‑inducible betIBA‑betT divergent operon transcriptional repressor |
| RA | 337,463 | A→G | 17.3% | E229G (GAG→GGG) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 339,865 | A→G | 6.9% | intergenic (+122/‑300) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 349,615 | T→C | 2.5% | intergenic (+43/‑397) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 375,168 | G→A | 5.0% | intergenic (+287/‑291) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,176 | A→G | 8.9% | intergenic (+295/‑283) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 433,649 | T→G | 16.8% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 434,884 | G→A | 3.0% | G80S (GGT→AGT) | ribE → | riboflavin synthase beta chain |
| RA | 594,790 | A→C | 13.2% | G218G (GGT→GGG) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 628,868 | T→G | 27.8% | G106G (GGT→GGG) | entA → | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
| RA | 630,187 | A→G | 14.6% | G98G (GGA→GGG) | cstA → | carbon starvation protein involved in peptide utilization, APC peptide transporter family protein |
| RA | 647,210 | A→C | 19.2% | G100G (GGT→GGG) | citG ← | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| RA | 729,695 | T→G | 22.4% | V38G (GTG→GGG) | rhsC → | Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor |
| RA | 766,690 | T→A | 14.9% | L236H (CTC→CAC) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 811,721 | T→G | 18.6% | V67G (GTG→GGG) | bioC → | malonyl‑ACP O‑methyltransferase, SAM‑dependent |
| RA | 989,901 | G→T | 21.2% | S152R (AGC→AGA) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 989,943 | T→G | 20.8% | S138S (TCA→TCC) ‡ | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 989,945 | A→G | 19.5% | S138P (TCA→CCA) ‡ | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 1,166,194 | C→A | 4.2% | T37K (ACG→AAG) | ndh → | respiratory NADH dehydrogenase 2/cupric reductase |
| JC | 1,195,194 | Δ3 bp | 4.6% | coding (72‑74/1251 nt) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,196,131 | G→A | 17.7% | A337T (GCC→ACC) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,196,305 | C→T | 31.9% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,258,996 | T→G | 20.8% | V69G (GTG→GGG) | ychH → | DUF2583 family putative inner membrane protein |
| RA | 1,286,974 | C→T | 10.1% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,466,639 | C→T | 5.5% | pseudogene (1248/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,478,418 | G→T | 12.9% | A65S (GCG→TCG) | ynbB → | putative CDP‑diglyceride synthase |
| RA | 1,708,805 | T→C | 17.0% | R629R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,930 | C→A | 11.3% | P671Q (CCG→CAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,890,491 | A→C | 16.7% | G14G (GGT→GGG) | yeaY ← | Slp family lipoprotein, RpoE‑regulated |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,151,689 | G→T | 40.5% | intergenic (+43/+22) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,151,691 | C→T | 20.0% | intergenic (+45/+20) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,185,197 | T→G | 21.0% | T35P (ACC→CCC) | thiM ← | hydoxyethylthiazole kinase |
| RA | 2,283,057 | C→A | 28.4% | D297Y (GAT→TAT) | yejK ← | spermidine nucleoid‑associated protein |
| RA | 2,304,873 | C→T | 10.6% | intergenic (+482/+233) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,904 | T→C | 12.7% | intergenic (+513/+202) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,912 | A→G | 10.7% | intergenic (+521/+194) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,367,366 | G→T | 20.5% | D100Y (GAT→TAT) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,367,380 | G→A | 12.1% | Q104Q (CAG→CAA) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| JC | 2,568,221 | Δ100 bp | 4.3% | intergenic (‑116/+2) | eutH ← / ← eutG | ethanolamine transporter/ethanol dehydrogenase involved in ethanolamine utilization, aldehyde reductase |
| RA | 2,608,229 | A→G | 14.7% | M439V (ATG→GTG) | hyfF → | hydrogenase 4, membrane subunit |
| RA | 2,801,725 | C→T | 4.2% | A127V (GCC→GTC) | nrdE → | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| RA | 2,828,504 | T→G | 15.3% | V257G (GTG→GGG) | srlD → | sorbitol‑6‑phosphate dehydrogenase |
| RA | 3,195,006 | C→G | 3.5% | intergenic (‑143/+91) | sibD ← / ← sibE | sRNA antisense regulator of toxic IbsD protein/sRNA antisense regulator of toxic IbsE protein |
| RA | 3,206,436 | G→A | 19.8% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,467 | A→G | 12.9% | S3G (AGC→GGC) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,469 | C→G | 9.0% | S3R (AGC→AGG) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,475 | T→A | 20.7% | S5R (AGT→AGA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,481 | G→A | 22.6% | K7K (AAG→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,482 | C→A | 11.1% | Q8K (CAA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,485 | C→A | 16.6% | Q9K (CAG→AAG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,504 | C→A | 11.0% | T15K (ACA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,370,873 | A→C | 13.8% | G54G (GGT→GGG) | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,492,832 | T→G | 22.5% | G89G (GGT→GGG) | tsgA → | putative transporter |
| RA | 3,551,915 | A→C | 10.1% | V186G (GTG→GGG) | malP ← | maltodextrin phosphorylase |
| RA | 3,560,493 | G→A | 6.0% | pseudogene (111/149 nt) | glpR ← | pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon |
| RA | 3,568,770 | G→T | 17.0% | N186K (AAC→AAA) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,697,739 | T→G | 14.5% | V428G (GTG→GGG) | bcsE → | cellulose production protein |
| RA | 3,760,383 | A→C | 29.2% | V289G (GTG→GGG) | selA ← | selenocysteine synthase |
| RA | 3,765,270 | A→G | 10.0% | D1030G (GAC→GGC) | rhsA → | Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
| RA | 3,780,895 | T→G | 10.9% | V357G (GTG→GGG) | lldD → | L‑lactate dehydrogenase, FMN‑linked |
| RA | 3,784,899 | A→C | 9.6% | V39G (GTG→GGG) | yibN ← | putative rhodanese‑related sulfurtransferase |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,848,483 | T→C | 3.7% | K47K (AAA→AAG) | uhpC ← | membrane protein regulates uhpT expression |
| RA | 3,852,515 | T→G | 20.5% | N90T (AAC→ACC) | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,862,615 | T→A | 13.2% | pseudogene (988/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,657 | A→G | 16.4% | pseudogene (946/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,660 | T→G | 43.6% | pseudogene (943/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,669 | T→C | 18.5% | pseudogene (934/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,672 | G→A | 14.2% | pseudogene (931/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,685 | T→C | 17.4% | pseudogene (918/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,927,429 | G→T | 6.7% | L92L (CTG→CTT) | asnA → | asparagine synthetase A |
| RA | 3,927,431 | Δ1 bp | 6.4% | coding (278/993 nt) | asnA → | asparagine synthetase A |
| RA | 3,927,434 | C→T | 7.1% | T94M (ACG→ATG) | asnA → | asparagine synthetase A |
| RA | 3,927,436 | C→T | 7.1% | H95Y (CAC→TAC) ‡ | asnA → | asparagine synthetase A |
| RA | 3,927,437 | A→G | 7.2% | H95R (CAC→CGC) ‡ | asnA → | asparagine synthetase A |
| RA | 3,927,439 | A→G | 7.3% | M96V (ATG→GTG) | asnA → | asparagine synthetase A |
| RA | 3,927,442 | A→T | 5.6% | K97* (AAA→TAA) | asnA → | asparagine synthetase A |
| RA | 3,927,443:1 | +C | 5.2% | coding (290/993 nt) | asnA → | asparagine synthetase A |
| JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,040,661 | A→C | 3.5% | intergenic (+26/+244) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,662 | A→C | 3.9% | intergenic (+27/+243) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,130,561 | T→G | 12.8% | V243G (GTG→GGG) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,151,328 | T→G | 20.6% | A590A (GCA→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,160,853 | C→T | 10.6% | intergenic (‑64/‑270) | sthA ← / → fabR | pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB |
| RA | 4,162,515 | A→C | 3.1% | I252S (ATC→AGC) | trmA ← | tRNA m(5)U54 methyltransferase, SAM‑dependent, tmRNA m(5)U341 methyltransferase |
| RA | 4,162,525 | G→T | 5.1% | Q249K (CAA→AAA) | trmA ← | tRNA m(5)U54 methyltransferase, SAM‑dependent, tmRNA m(5)U341 methyltransferase |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,209,826 | T→G | 16.6% | noncoding (54/76 nt) | gltV → | tRNA‑Glu |
| RA | 4,219,538 | C→T | 6.9% | A315V (GCG→GTG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,248,261 | Δ1 bp | 3.1% | coding (292/1341 nt) | lamB → | maltose outer membrane porin (maltoporin) |
| RA | 4,256,068 | G→C | 18.4% | P133R (CCG→CGG) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,257,903 | G→T | 14.6% | G55C (GGT→TGT) | dinF → | oxidative stress resistance protein, putative MATE family efflux pump, UV and mitomycin C inducible protein |
| RA | 4,288,256 | A→C | 11.6% | N165T (AAC→ACC) | nrfA → | nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,296,059 | C→T | 5.1% | intergenic (+266/+378) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,267 | T→C | 12.8% | intergenic (+474/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,421,184 | A→C | 28.8% | T402P (ACC→CCC) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
| RA | 4,452,055 | Δ1 bp | 4.0% | coding (997/1503 nt) | ytfR → | putative sugar ABC transporter ATPase |
| RA | 4,555,120 | A→G | 11.5% | I182V (ATC→GTC) | uxuR → | fructuronate‑inducible hexuronate regulon transcriptional repressor, autorepressor |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1211933 | 1212795 | 863 | 42 [40] | [41] 43 | [iraM]–[ycgX] | [iraM], [ycgX] |
| * | * | ÷ | NC_000913 | 1299336 | 1300774 | 1439 | 42 [40] | [41] 42 | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | * | ÷ | NC_000913 | 2470044 | 2470713 | 670 | 42 [41] | [40] 42 | [gtrS] | [gtrS] |
| * | * | ÷ | NC_000913 | 3769515 | 3770190 | 676 | 42 [39] | [38] 42 | [yibV]–yibU | [yibV], yibV, yibU, yibU |
| * | * | ÷ | NC_000913 | 4233736 | 4235847 | 2112 | 42 [41] | [36] 43 | pgi | pgi |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 95 (0.840) | 66/438 | NT | 97.9% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 2 (0.020) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 285874 = | 130 (1.150) | 5 (0.050) | 5/422 | NT | 3.9% | coding (480/1383 nt) | yagG | CP4‑6 prophage, putative sugar transporter |
| ? | NC_000913 | 285896 = | 121 (1.110) | coding (502/1383 nt) | yagG | CP4‑6 prophage, putative sugar transporter | |||||
| * | ? | NC_000913 | 458787 = | 81 (0.720) | 29 (0.260) | 26/432 | NT | 26.6% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 73 (0.650) | 38 (0.340) | 34/430 | NT | 34.7% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 969621 = | 108 (0.950) | 3 (0.030) | 3/420 | NT | 2.8% | coding (233/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain |
| ? | NC_000913 | 969695 = | 102 (0.940) | coding (307/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
| * | ? | NC_000913 | 1045201 = | 149 (1.320) | 4 (0.040) | 3/420 | NT | 2.9% | coding (603/1140 nt) | gfcE | putative O‑antigen capsule outer membrane auxillary protein export channel |
| ? | NC_000913 | 1045310 = | 128 (1.180) | coding (494/1140 nt) | gfcE | putative O‑antigen capsule outer membrane auxillary protein export channel | |||||
| * | ? | NC_000913 | 1207790 = | 12 (0.110) | 106 (1.010) | 65/406 | NT | 90.9% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 10 (0.100) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 13 (0.110) | 88 (0.840) | 59/406 | NT | 88.9% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 10 (0.100) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 1 (0.010) | 129 (1.140) | 71/438 | NT | 99.2% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 20 (0.180) | 19/430 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1432648 | NA (NA) | 4 (0.040) | 3/422 | NT | 4.0% | coding (238/576 nt) | tfaR | Rac prophage, putative tail fiber assembly protein |
| ? | NC_000913 | 1634576 = | 100 (0.880) | coding (310/576 nt) | tfaQ | Qin prophage, putative tail fibre assembly protein | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 35 (0.320) | 30/422 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 45 (0.400) | 26/438 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 108 (0.950) | 68/438 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 2453896 = | 101 (0.890) | 3 (0.030) | 3/428 | NT | 2.6% | pseudogene (1104/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family,putative membrane, Not classified, putative outer membrane protein |
| ? | NC_000913 | 2454232 = | 129 (1.170) | pseudogene (768/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family,putative membrane, Not classified, putative outer membrane protein | |||||
| * | ? | NC_000913 | 2514275 = | NA (NA) | 23 (0.210) | 22/432 | NT | 25.0% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | NC_000913 | = 2536318 | 70 (0.620) | coding (487/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2515612 | NA (NA) | 27 (0.240) | 24/434 | NT | 27.7% | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | NC_000913 | 2536308 = | 71 (0.630) | coding (477/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 6 (0.050) | 4/434 | NT | 5.8% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040682 | 99 (0.880) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | = 3552305 | 106 (0.940) | 5 (0.050) | 5/422 | NT | 4.6% | coding (167/2394 nt) | malP | maltodextrin phosphorylase |
| ? | NC_000913 | = 3552311 | 105 (0.960) | coding (161/2394 nt) | malP | maltodextrin phosphorylase | |||||
| * | ? | NC_000913 | 3741900 = | 164 (1.450) | 4 (0.040) | 3/412 | NT | 2.8% | coding (632/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon |
| ? | NC_000913 | 3742226 = | 120 (1.130) | coding (306/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon | |||||
| * | ? | NC_000913 | = 3808072 | 101 (0.890) | 3 (0.030) | 3/430 | NT | 3.0% | coding (26/1035 nt) | waaQ | lipopolysaccharide core biosynthesis protein |
| ? | NC_000913 | = 3808073 | 97 (0.870) | coding (25/1035 nt) | waaQ | lipopolysaccharide core biosynthesis protein | |||||
| * | ? | NC_000913 | 3923704 = | 178 (1.570) | 6 (0.060) | 5/414 | NT | 3.6% | intergenic (‑25/+39) | rsmG/mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent, glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| ? | NC_000913 | 3923732 = | 156 (1.460) | intergenic (‑53/+11) | rsmG/mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent, glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 | |||||
| * | ? | NC_000913 | 3927417 = | 114 (1.010) | 14 (0.130) | 12/414 | NT | 11.4% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | 3927456 = | 110 (1.030) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | = 4320072 | 118 (1.040) | 3 (0.030) | 3/420 | NT | 2.7% | coding (593/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit |
| ? | NC_000913 | = 4320204 | 101 (0.930) | coding (461/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||