Thu May 23 08:21:52 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o breseq_processes/40 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/4-Colony-11-9-12_S9_L001_R1_001.good.fq /var/alemutpipe-outputs/good/4-Colony-11-9-12_S9_L001_R2_001.good.fq