Mon Oct 29 23:13:32 2018

breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o GLY-bop27_1_4gb--K12_MG1655/breseq/GlyA_D40_I1_S2102_L001 -r /media/data/dnaseq/gly/to_reseq/bop27_1_4.gb /media/data/dnaseq/gly/good/GlyA_D40_I1_S2102_L001_R1_001.good.fq.gz /media/data/dnaseq/gly/good/GlyA_D40_I1_S2102_L001_R2_001.good.fq.gz