Tue Oct 30 05:38:13 2018

breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o GLY-bop27_1_4gb--K12_MG1655/breseq/GlyC_D40_I0_S2126_L001 -r /media/data/dnaseq/gly/to_reseq/bop27_1_4.gb /media/data/dnaseq/gly/good/GlyC_D40_I0_S2126_L001_R1_001.good.fq.gz /media/data/dnaseq/gly/good/GlyC_D40_I0_S2126_L001_R2_001.good.fq.gz