breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 17,527 G→C 8.4% S13S (TCG→TCC)  nhaA → sodium‑proton antiporter
RA 17,528 G→C 8.4% G14R (GGA→CGA)  nhaA → sodium‑proton antiporter
RA 53,376 G→A 6.6% P14L (CCC→CTC)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 53,379 T→C 7.1% E13G (GAG→GGG)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 83,587 A→C 58.7% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 58.8% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 114,506 G→T 9.6% intergenic (+19/+16) guaC → / ← hofC GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA 114,507 A→T 10.6% intergenic (+20/+15) guaC → / ← hofC GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA 114,510 A→T 10.4% intergenic (+23/+12) guaC → / ← hofC GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA 114,511 A→C 10.8% intergenic (+24/+11) guaC → / ← hofC GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
RA 120,154 Δ1 bp 8.2% intergenic (+19/+24) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 120,158:1 +A 8.5% intergenic (+23/+20) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 146,733 G→A 5.2% intergenic (‑39/‑235) panD ← / → yadD aspartate 1‑decarboxylase/transposase_31 family protein
RA 146,734 A→T 5.6% intergenic (‑40/‑234) panD ← / → yadD aspartate 1‑decarboxylase/transposase_31 family protein
RA 146,735 T→C 5.1% intergenic (‑41/‑233) panD ← / → yadD aspartate 1‑decarboxylase/transposase_31 family protein
RA 147,855 A→T 5.6% V296V (GTA→GTT)  yadD → transposase_31 family protein
RA 147,857 T→A 5.6% I297N (ATT→AAT)  yadD → transposase_31 family protein
RA 147,859 A→T 5.3% N298Y (AAC→TAC)  yadD → transposase_31 family protein
RA 151,519 A→C 7.8% I27M (ATT→ATG)  yadK ← putative fimbrial‑like adhesin protein
RA 151,522 G→T 8.0% A26A (GCC→GCA)  yadK ← putative fimbrial‑like adhesin protein
RA 169,748 T→A 7.4% intergenic (+21/‑30) fhuA → / → fhuC ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase
RA 169,749 T→A 7.4% intergenic (+22/‑29) fhuA → / → fhuC ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase
RA 217,037 A→T 5.4% intergenic (‑34/+20) yaeF ← / ← proS putative lipoprotein/prolyl‑tRNA synthetase
RA 256,449 T→C 5.9% intergenic (+14/‑78) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 282,513 T→C 5.8% L79P (CTG→CCG)  yagE → 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
RA 282,518 G→A 5.7% G81S (GGC→AGC)  yagE → 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
RA 314,255 T→C 6.2% intergenic (‑450/‑102) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 314,258 G→A 6.2% intergenic (‑453/‑99) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 344,704 A→T 6.2% K177* (AAA→TAA) ‡ yahL → uncharacterized protein
RA 344,705 A→T 6.2% K177I (AAA→ATA) ‡ yahL → uncharacterized protein
RA 371,064 C→G 5.8% A263G (GCC→GGC)  mhpB → 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase
RA 371,067 T→A 5.0% I264N (ATT→AAT)  mhpB → 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase
RA 371,070 C→G 5.7% A265G (GCC→GGC)  mhpB → 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase
RA 375,045 G→A 6.8% intergenic (+164/‑414) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 375,065 Δ1 bp 6.6% intergenic (+184/‑394) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 375,066 Δ1 bp 6.6% intergenic (+185/‑393) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 375,067 Δ1 bp 6.6% intergenic (+186/‑392) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 375,068 Δ1 bp 6.7% intergenic (+187/‑391) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 375,072 G→T 6.9% intergenic (+191/‑387) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 375,077 Δ1 bp 7.1% intergenic (+196/‑382) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 375,078 Δ1 bp 7.1% intergenic (+197/‑381) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 375,101 T→C 9.1% intergenic (+220/‑358) mhpE → / → mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
RA 383,897 C→T 5.2% M13I (ATG→ATA)  yaiP ← putative family 2 glycosyltransferase
RA 438,740 T→G 7.4% N480H (AAC→CAC)  dxs ← 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring
RA 438,743 C→A 7.3% G479C (GGC→TGC)  dxs ← 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring
RA 443,022 G→A 5.9% intergenic (+25/+29) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 443,023 T→C 6.0% intergenic (+26/+28) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 454,853 T→C 5.6% intergenic (+64/‑280) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 454,856 G→A 5.6% intergenic (+67/‑277) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 475,971 C→G 5.4% intergenic (+20/+11) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 475,972 C→G 5.4% intergenic (+21/+10) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 481,225 T→G 22.2% intergenic (‑517/+29) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 481,228 C→A 22.8% intergenic (‑520/+26) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 543,059 T→A 5.9% intergenic (+26/+202) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,062 T→A 6.0% intergenic (+29/+199) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,091 G→C 8.8% intergenic (+58/+170) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,094 G→C 8.8% intergenic (+61/+167) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 574,504 Δ1 bp 7.4% intergenic (+165/+25) quuD → / ← nmpC DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage
RA 603,391 C→G 8.2% intergenic (+56/+25) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,393 T→A 8.0% intergenic (+58/+23) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,395 C→G 8.0% intergenic (+60/+21) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 644,030 A→G 5.2% intergenic (‑63/+167) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,034 T→C 5.3% intergenic (‑67/+163) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,036 A→T 5.3% intergenic (‑69/+161) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,038 G→A 5.2% intergenic (‑71/+159) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,042 C→T 5.2% intergenic (‑75/+155) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 659,204 C→T 10.5% intergenic (+54/+47) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,205 A→T 10.9% intergenic (+55/+46) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,206 A→T 10.9% intergenic (+56/+45) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,207 A→G 10.9% intergenic (+57/+44) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 710,170 C→T 12.4% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 710,173 A→G 10.7% intergenic (+57/+27) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 729,376 G→T 36.4% intergenic (+36/‑207) ybfA → / → rhsC DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 729,377 A→T 30.8% intergenic (+37/‑206) ybfA → / → rhsC DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 729,378 A→T 30.8% intergenic (+38/‑205) ybfA → / → rhsC DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 729,379 A→C 30.8% intergenic (+39/‑204) ybfA → / → rhsC DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 734,374 G→A 5.4% pseudogene (242/1521 nt) rhsO → pseudogene, Rhs family
RA 734,377 T→C 5.3% pseudogene (245/1521 nt) rhsO → pseudogene, Rhs family
RA 770,810 T→C 7.4% intergenic (+199/‑648) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 857,576 T→C 12.5% intergenic (+21/+220) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,578 C→G 12.5% intergenic (+23/+218) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,580 G→A 12.5% intergenic (+25/+216) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 892,455 G→C 6.0% V163V (GTG→GTC)  rimK → ribosomal protein S6 modification protein
RA 892,457 T→A 6.3% I164N (ATT→AAT)  rimK → ribosomal protein S6 modification protein
RA 892,459 G→C 6.3% D165H (GAC→CAC)  rimK → ribosomal protein S6 modification protein
RA 1,015,912 T→A 9.6% intergenic (+30/+40) rmf → / ← fabA ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase
RA 1,038,117 C→G 5.9% H126Q (CAC→CAG)  cbdA → cytochrome bd‑II oxidase, subunit I
RA 1,038,118 C→G 6.0% L127V (CTG→GTG)  cbdA → cytochrome bd‑II oxidase, subunit I
RA 1,074,894 G→T 6.0% intergenic (+14/+26) rutR → / ← putA rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,147,980 G→T 8.9% K120N (AAG→AAT)  plsX → putative phosphate acyltransferase
RA 1,147,986 G→C 8.8% L122L (CTG→CTC)  plsX → putative phosphate acyltransferase
RA 1,147,987 G→C 8.8% E123Q (GAG→CAG)  plsX → putative phosphate acyltransferase
RA 1,147,993 A→C 8.6% I125L (ATT→CTT)  plsX → putative phosphate acyltransferase
RA 1,169,380 T→C 7.5% intergenic (+50/+32) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,382 C→G 7.6% intergenic (+52/+30) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,384 G→A 7.9% intergenic (+54/+28) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,170,272 G→C 7.5% P35A (CCA→GCA)  ldtC ← L,D‑transpeptidase linking Lpp to murein
RA 1,170,275 G→C 7.5% P34A (CCG→GCG)  ldtC ← L,D‑transpeptidase linking Lpp to murein
RA 1,170,282 C→G 6.9% W31C (TGG→TGC)  ldtC ← L,D‑transpeptidase linking Lpp to murein
RA 1,232,481 C→T 6.2% intergenic (+27/+19) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,232,484 A→G 6.2% intergenic (+30/+16) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,233,154 T→A 7.0% intergenic (‑124/+22) dsbB ← / ← nhaB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter
RA 1,233,157 T→A 7.2% intergenic (‑127/+19) dsbB ← / ← nhaB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter
JC JC 1,293,196 IS5 (+) +4 bp 23.1% intergenic (‑274/‑328) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
RA 1,306,787 G→A 13.8% intergenic (+19/+34) oppF → / ← yciU oligopeptide ABC transporter ATPase/UPF0263 family protein
RA 1,306,788 T→C 13.8% intergenic (+20/+33) oppF → / ← yciU oligopeptide ABC transporter ATPase/UPF0263 family protein
RA 1,324,837 A→C 6.5% Y31S (TAT→TCT) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,838 T→A 6.4% Y31* (TAT→TAA) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,839 G→T 7.6% E32* (GAA→TAA)  yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,344,033 A→G 5.3% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,036 G→C 5.4% T104S (ACT→AGT)  yciT ← global regulator of transcription; DeoR family
RA 1,344,039 C→T 5.3% R103Q (CGG→CAG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,047 T→C 5.4% L100L (CTA→CTG)  yciT ← global regulator of transcription; DeoR family
RA 1,426,417 T→C 5.1% intergenic (+335/‑37) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,426,418 T→G 5.1% intergenic (+336/‑36) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,426,421 C→A 5.1% intergenic (+339/‑33) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,426,422 G→A 5.1% intergenic (+340/‑32) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,441,833 G→C 5.3% intergenic (‑90/+21) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,835 A→T 5.3% intergenic (‑92/+19) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,837 G→C 5.3% intergenic (‑94/+17) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,449,050 T→A 13.2% intergenic (+32/+26) feaB → / ← tynA phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring
RA 1,520,584 A→G 5.3% D108G (GAC→GGC) ‡ mcbR → colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled
RA 1,520,585 C→T 5.5% D108D (GAC→GAT) ‡ mcbR → colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled
RA 1,533,113 T→G 5.0% L21R (CTT→CGT)  pptA → 4‑oxalocrotonate tautomerase
RA 1,541,077 G→C 6.3% A505G (GCC→GGC)  narZ ← nitrate reductase 2 (NRZ), alpha subunit
RA 1,552,377 G→A 6.2% intergenic (+386/+21) fdnI → / ← yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
RA 1,552,388 T→C 6.1% intergenic (+397/+10) fdnI → / ← yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
RA 1,568,915 Δ1 bp 5.2% intergenic (‑92/+39) yddW ← / ← gadC liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter
RA 1,568,919:1 +C 5.3% intergenic (‑96/+35) yddW ← / ← gadC liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter
RA 1,579,563 G→T 6.5% intergenic (‑221/+70) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,564 G→A 6.4% intergenic (‑222/+69) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,569 T→C 6.3% intergenic (‑227/+64) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,570 A→C 6.5% intergenic (‑228/+63) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,660,438 A→G 6.5% S790S (TCA→TCG)  ynfE → putative selenate reductase, periplasmic
RA 1,660,442 C→G 6.5% L792V (CTG→GTG)  ynfE → putative selenate reductase, periplasmic
RA 1,660,446 C→T 6.0% A793V (GCG→GTG)  ynfE → putative selenate reductase, periplasmic
RA 1,666,466 T→G 10.8% Y384* (TAT→TAG)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,468 A→T 10.6% Q385L (CAG→CTG)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,470 C→A 10.5% L386I (CTA→ATA)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,679,398 T→A 13.6% intergenic (+27/‑159) ydgH → / → ydgI DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter
RA 1,679,400 G→C 13.6% intergenic (+29/‑157) ydgH → / → ydgI DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter
RA 1,679,402 T→A 13.8% intergenic (+31/‑155) ydgH → / → ydgI DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter
RA 1,685,527 A→G 100% G354G (GGT→GGC)  fumC ← fumarate hydratase (fumarase C),aerobic Class II
RA 1,703,251 A→T 12.2% intergenic (+17/+17) add → / ← ydgJ adenosine deaminase/putative oxidoreductase
RA 1,703,252 A→T 12.2% intergenic (+18/+16) add → / ← ydgJ adenosine deaminase/putative oxidoreductase
RA 1,724,395 T→A 6.8% E87D (GAA→GAT)  sodC ← superoxide dismutase, Cu, Zn, periplasmic
RA 1,737,438 C→T 5.4% intergenic (‑148/+18) ydhP ← / ← ynhF putative MFS transporter, inner membrane protein/stress response membrane
RA 1,778,364 C→T 7.4% intergenic (+17/+26) ydiO → / ← ydiP putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,778,367 C→G 7.4% intergenic (+20/+23) ydiO → / ← ydiP putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,778,372 C→G 6.9% intergenic (+25/+18) ydiO → / ← ydiP putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,778,375 A→G 7.3% intergenic (+28/+15) ydiO → / ← ydiP putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator
RA 1,799,370 Δ1 bp 5.3% intergenic (‑100/+23) pheM ← / ← rplT phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA 1,836,136 G→C 5.4% D22H (GAC→CAC)  ynjB → putative ABC transporter periplasmic binding protein
RA 1,856,333 T→G 6.6% E199A (GAG→GCG) ‡ ydjH ← putative kinase
RA 1,856,334 C→A 6.4% E199* (GAG→TAG) ‡ ydjH ← putative kinase
RA 1,865,682 G→C 8.9% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,926,888 C→A 5.1% G651V (GGC→GTC)  ptrB ← protease II
RA 1,926,891 G→C 5.1% S650* (TCA→TGA)  ptrB ← protease II
RA 1,926,894 T→G 5.1% D649A (GAC→GCC)  ptrB ← protease II
RA 1,926,900 T→G 5.7% D647A (GAC→GCC)  ptrB ← protease II
RA 1,948,179 T→A 7.9% intergenic (‑28/+1) yebC ← / ← nudB UPF0082 family protein/dihydroneopterin triphosphate pyrophosphatase
RA 1,948,180 T→A 7.8% *151C (TGA→TGT)  nudB ← dihydroneopterin triphosphate pyrophosphatase
RA 1,971,920 G→T 6.3% Q258K (CAA→AAA)  tar ← methyl‑accepting chemotaxis protein II
RA 1,971,923 T→C 6.3% M257V (ATG→GTG)  tar ← methyl‑accepting chemotaxis protein II
MC JC 1,978,503 Δ776 bp 100% insB1–insA insB1, insA
RA 1,985,112 C→G 8.5% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 1,987,442 Δ1 bp 6.1% intergenic (+14/+65) ftnB → / ← yecJ ferritin B, putative ferrous iron reservoir/DUF2766 family protein
RA 1,987,450:1 +A 7.7% intergenic (+22/+57) ftnB → / ← yecJ ferritin B, putative ferrous iron reservoir/DUF2766 family protein
RA 2,059,939 G→T 5.2% intergenic (+13/+25) asnU → / ← cbl tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator
RA 2,059,948 T→A 5.4% intergenic (+22/+16) asnU → / ← cbl tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator
RA 2,059,950 T→A 5.2% intergenic (+24/+14) asnU → / ← cbl tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator
RA 2,062,354 T→A 8.4% intergenic (+19/+37) asnV → / ← ldtA tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA 2,062,355 T→G 8.5% intergenic (+20/+36) asnV → / ← ldtA tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA 2,062,356 C→A 8.6% intergenic (+21/+35) asnV → / ← ldtA tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA 2,062,357 T→A 8.7% intergenic (+22/+34) asnV → / ← ldtA tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA 2,081,688 A→T 10.1% I287N (ATT→AAT)  dacD ← D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b
RA 2,089,854 A→T 6.1% intergenic (‑141/‑142) yefM ← / → hisL antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide
RA 2,090,122 A→G 20.0% intergenic (+76/‑70) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,124 C→G 19.6% intergenic (+78/‑68) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,126 C→T 20.0% intergenic (+80/‑66) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,103,105 C→A 5.4% pseudogene (285/446 nt) wbbL ← pseudogene, lipopolysaccharide biosynthesis protein
RA 2,103,106 T→A 5.4% pseudogene (284/446 nt) wbbL ← pseudogene, lipopolysaccharide biosynthesis protein
RA 2,103,107 T→G 5.4% pseudogene (283/446 nt) wbbL ← pseudogene, lipopolysaccharide biosynthesis protein
RA 2,145,313 C→A 100% S683Y (TCC→TAC)  yegE → putative diguanylate cyclase
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,332 C→T 5.8% intergenic (‑128/+180) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,337 G→T 6.7% intergenic (‑133/+175) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,340 A→C 7.1% intergenic (‑136/+172) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,345 A→G 6.9% intergenic (‑141/+167) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,255,991 A→T 8.1% K213* (AAA→TAA) ‡ yeiL → putative transcriptional regulator
RA 2,255,992 A→T 8.2% K213I (AAA→ATA) ‡ yeiL → putative transcriptional regulator
RA 2,259,549 A→T 5.1% intergenic (‑253/+170) psuK ← / ← fruA pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components
RA 2,259,550 A→T 5.3% intergenic (‑254/+169) psuK ← / ← fruA pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components
RA 2,259,553 A→T 5.3% intergenic (‑257/+166) psuK ← / ← fruA pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components
RA 2,259,554 A→T 5.3% intergenic (‑258/+165) psuK ← / ← fruA pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components
RA 2,270,602 T→C 6.4% intergenic (+57/‑124) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,270,605 G→A 5.5% intergenic (+60/‑121) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,305,085 A→G 30.4% intergenic (+692/+23) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,086 C→G 25.0% intergenic (+693/+22) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,087 C→T 25.0% intergenic (+694/+21) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,311,607 A→C 5.9% intergenic (‑73/+39) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,311,616 C→T 7.3% intergenic (‑82/+30) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,311,619 A→G 7.1% intergenic (‑85/+27) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,314,800 A→C 6.1% Q438P (CAG→CCG) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,314,801 G→T 6.2% Q438H (CAG→CAT) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,318,095 C→G 100% L594F (TTG→TTC)  rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,375,483 A→T 6.0% L160L (CTT→CTA) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,375,484 A→T 6.0% L160H (CTT→CAT) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,390,012 Δ1 bp 6.1% intergenic (+48/+36) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,390,016:1 +C 6.4% intergenic (+52/+32) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,414 C→G 6.6% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,417 C→G 6.8% W30S (TGG→TCG)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,407,898 A→C 5.3% Q113P (CAG→CCG) ‡ alaA → glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,407,899 G→T 5.3% Q113H (CAG→CAT) ‡ alaA → glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,411,408 A→T 5.8% intergenic (‑56/+31) yfbS ← / ← yfbT putative transporter/sugar phosphatas
RA 2,411,410 G→T 5.8% intergenic (‑58/+29) yfbS ← / ← yfbT putative transporter/sugar phosphatas
RA 2,411,411 A→C 5.8% intergenic (‑59/+28) yfbS ← / ← yfbT putative transporter/sugar phosphatas
RA 2,411,413 A→T 5.5% intergenic (‑61/+26) yfbS ← / ← yfbT putative transporter/sugar phosphatas
RA 2,414,689 C→G 5.8% intergenic (+17/‑58) ackA → / → pta acetate kinase A and propionate kinase 2/phosphate acetyltransferase
RA 2,420,183 A→G 6.5% R101R (CGT→CGC)  yfcF ← glutathione S‑transferase
RA 2,420,186 C→T 6.5% A100A (GCG→GCA)  yfcF ← glutathione S‑transferase
RA 2,425,964 C→T 5.2% intergenic (‑48/+42) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,425,968 T→G 5.6% intergenic (‑52/+38) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,425,971 C→A 5.5% intergenic (‑55/+35) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,425,975 A→G 5.4% intergenic (‑59/+31) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,432,990 G→C 5.1% intergenic (‑48/+22) folC ← / ← accD bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit
RA 2,462,677 A→T 11.4% intergenic (+31/‑335) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,462,678 T→A 11.3% intergenic (+32/‑334) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,462,679 A→T 11.2% intergenic (+33/‑333) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,521,344 C→T 32.0% intergenic (+16/+249) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,521,346 A→T 30.7% intergenic (+18/+247) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,521,348 A→G 30.8% intergenic (+20/+245) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,560,317 A→C 9.8% N21H (AAT→CAT)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,321 C→T 9.7% A22V (GCT→GTT)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,326 A→G 9.2% T24A (ACA→GCA)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,330 G→T 8.8% C25F (TGC→TTC)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,581,762 G→A 5.6% A339V (GCC→GTC)  ypfG ← DUF1176 family protein
RA 2,581,765 T→C 6.5% D338G (GAC→GGC)  ypfG ← DUF1176 family protein
RA 2,596,873 Δ1 bp 6.2% intergenic (‑136/+32) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,596,878:1 +G 6.2% intergenic (‑141/+27) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,632,584 A→T 7.5% intergenic (‑49/+20) guaA ← / ← guaB GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase
RA 2,632,586 G→C 7.2% intergenic (‑51/+18) guaA ← / ← guaB GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase
RA 2,632,588 A→T 7.5% intergenic (‑53/+16) guaA ← / ← guaB GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase
RA 2,638,584 A→T 5.1% F23L (TTT→TTA)  bamB ← BamABCDE complex OM biogenesis lipoprotein
RA 2,672,639 A→C 5.3% Q198P (CAG→CCG) ‡ hcaD → phenylpropionate dioxygenase, ferredoxin reductase subunit
RA 2,672,640 G→T 5.3% Q198H (CAG→CAT) ‡ hcaD → phenylpropionate dioxygenase, ferredoxin reductase subunit
RA 2,691,168:1 +T 6.5% noncoding (173/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,169 A→T 6.0% noncoding (172/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,171 T→A 5.1% noncoding (170/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,173 Δ1 bp 6.1% noncoding (168/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,704,304 A→G 24.2% intergenic (‑241/+31) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,306 A→T 23.5% intergenic (‑243/+29) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,308 C→T 23.5% intergenic (‑245/+27) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,724,412 A→T 5.7% A95A (GCA→GCT)  yfiM → putative lipoprotein
RA 2,724,413 A→T 5.7% S96C (AGC→TGC)  yfiM → putative lipoprotein
RA 2,731,073 A→T 8.2% noncoding (85/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,731,074 A→T 8.0% noncoding (84/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,750,073 G→T 7.3% intergenic (+13/+42) yfjD → / ← grpE UPF0053 family inner membrane protein/heat shock protein
RA 2,750,078 T→G 7.2% intergenic (+18/+37) yfjD → / ← grpE UPF0053 family inner membrane protein/heat shock protein
RA 2,750,081 C→A 7.3% intergenic (+21/+34) yfjD → / ← grpE UPF0053 family inner membrane protein/heat shock protein
RA 2,750,086 A→C 7.6% intergenic (+26/+29) yfjD → / ← grpE UPF0053 family inner membrane protein/heat shock protein
RA 2,761,620 T→G 8.0% K641Q (AAG→CAG)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,761,623 C→A 8.1% V640L (GTA→TTA)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,778,123 G→T 7.4% intergenic (+341/+23) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,778,124 A→C 7.5% intergenic (+342/+22) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,817,977 A→T 7.1% intergenic (‑117/+82) argQ ← / ← argZ tRNA‑Arg/tRNA‑Arg
RA 2,817,978 A→T 7.1% intergenic (‑118/+81) argQ ← / ← argZ tRNA‑Arg/tRNA‑Arg
RA 2,838,222 A→T 5.2% intergenic (‑117/+32) hydN ← / ← ascG formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor
RA 2,907,998 A→T 15.6% intergenic (‑57/+31) eno ← / ← pyrG enolase/CTP synthetase
RA 2,918,017 C→T 5.5% intergenic (+204/+28) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,918,019 G→T 5.7% intergenic (+206/+26) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,918,020 A→C 5.3% intergenic (+207/+25) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,918,022 A→G 5.5% intergenic (+209/+23) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,964,373 C→T 6.0% P261P (CCG→CCA)  thyA ← thymidylate synthetase
RA 2,976,320 T→G 6.9% noncoding (66/82 nt) omrB ← sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent
RA 2,976,321 C→A 6.9% noncoding (65/82 nt) omrB ← sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent
RA 2,993,889 T→A 6.4% intergenic (+33/‑50) ygeI → / → pbl uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family
RA 2,993,896 T→A 5.3% intergenic (+40/‑43) ygeI → / → pbl uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family
RA 3,050,012 C→T 5.1% C219Y (TGT→TAT) ‡ gcvT ← aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex
RA 3,050,013 A→G 5.1% C219R (TGT→CGT) ‡ gcvT ← aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex
RA 3,063,045 C→G 5.4% A20G (GCC→GGC)  argK → membrane ATPase/protein kinase
RA 3,066,309 T→A 5.4% I289F (ATT→TTT)  ygfI ← putative DNA‑binding transcriptional regulator
RA 3,066,319 Δ1 bp 5.6% coding (855/897 nt) ygfI ← putative DNA‑binding transcriptional regulator
RA 3,156,590 C→A 8.9% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,156,591 T→G 8.6% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,180,497 Δ1 bp 7.9% coding (77/1161 nt) ygiC → ATP‑Grasp family ATPase
RA 3,180,505 G→T 10.2% E29* (GAG→TAG) ‡ ygiC → ATP‑Grasp family ATPase
RA 3,180,506 A→C 10.1% E29A (GAG→GCG) ‡ ygiC → ATP‑Grasp family ATPase
RA 3,180,513:1 +A 5.8% coding (93/1161 nt) ygiC → ATP‑Grasp family ATPase
RA 3,206,172 T→C 6.9% T29A (ACG→GCG)  ttdR ← transcriptional activator of ttdABT
RA 3,206,176 C→A 7.1% A27A (GCG→GCT)  ttdR ← transcriptional activator of ttdABT
RA 3,206,179 T→G 7.0% A26A (GCA→GCC)  ttdR ← transcriptional activator of ttdABT
RA 3,206,183 G→A 7.4% A25V (GCC→GTC)  ttdR ← transcriptional activator of ttdABT
RA 3,219,179 T→A 5.8% intergenic (‑103/‑315) aer ← / → patA fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component/putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
RA 3,239,609 T→G 7.5% intergenic (+64/‑335) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,610 C→G 8.3% intergenic (+65/‑334) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,611 C→A 8.3% intergenic (+66/‑333) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,269,967 C→T 9.5% intergenic (+365/+249) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,269,968 G→T 9.3% intergenic (+366/+248) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,269,969 A→C 9.3% intergenic (+367/+247) yhaC → / ← rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
RA 3,276,886 C→A 7.3% intergenic (+33/‑116) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,276,887 T→C 7.3% intergenic (+34/‑115) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,276,890 G→A 7.1% intergenic (+37/‑112) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,276,891 T→G 7.3% intergenic (+38/‑111) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,288,032 C→A 10.0% intergenic (+22/‑58) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,288,033 T→G 9.7% intergenic (+23/‑57) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,291,109 A→T 5.6% K766* (AAA→TAA) ‡ yraJ → putative outer membrane protein
RA 3,291,110 A→T 5.7% K766I (AAA→ATA) ‡ yraJ → putative outer membrane protein
RA 3,313,207 G→A 13.0% intergenic (‑29/+135) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,313,208 T→A 15.8% intergenic (‑30/+134) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,313,209 T→C 15.8% intergenic (‑31/+133) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,332,822 G→A 15.4% intergenic (‑87/+40) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,332,823 T→C 15.4% intergenic (‑88/+39) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,354,537 C→G 5.7% intergenic (‑487/‑188) yhcC ← / → gltB putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit
RA 3,407,293 T→A 9.4% intergenic (+27/‑82) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,407,294 T→A 9.4% intergenic (+28/‑81) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,407,295 T→A 9.4% intergenic (+29/‑80) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,439,588 G→C 22.9% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,439,589 G→C 20.8% intergenic (‑80/+27) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,477,878 T→A 12.3% intergenic (+20/+29) slyX → / ← slyD phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase)
RA 3,486,517 G→A 94.1% G133D (GGC→GAC)  crp → cAMP‑activated global transcription factor, mediator of catabolite repression
RA 3,512,601 A→G 5.6% intergenic (‑257/+33) yhfZ ← / ← trpS putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,642,347 G→A 8.2% intergenic (+16/+33) dtpB → / ← rsmJ dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA 3,642,358 T→A 8.4% intergenic (+27/+22) dtpB → / ← rsmJ dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA 3,642,361 T→A 8.2% intergenic (+30/+19) dtpB → / ← rsmJ dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA 3,657,599 T→A 8.9% intergenic (+32/+387) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,601 G→C 8.9% intergenic (+34/+385) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,603 T→A 9.3% intergenic (+36/+383) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,714,163:1 +T 6.3% coding (2232/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,714,168 Δ1 bp 6.2% coding (2227/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,722,300 G→T 5.6% intergenic (+195/+28) sokA → / ← glyS pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit
RA 3,722,301 A→C 5.0% intergenic (+196/+27) sokA → / ← glyS pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit
RA 3,736,322 G→T 5.3% intergenic (+165/+31) xylR → / ← bax xylose divergent operon transcriptional activator/putative glucosaminidase
RA 3,736,323 A→G 5.1% intergenic (+166/+30) xylR → / ← bax xylose divergent operon transcriptional activator/putative glucosaminidase
RA 3,736,324 C→T 5.1% intergenic (+167/+29) xylR → / ← bax xylose divergent operon transcriptional activator/putative glucosaminidase
RA 3,781,051 C→G 6.7% intergenic (+34/‑164) lldD → / → trmL L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA 3,790,300 A→T 6.5% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 6.3% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,853,677 A→C 15.7% intergenic (+35/‑245) tisB → / → emrD toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein
RA 3,886,756 G→A 5.0% intergenic (+34/‑72) yidC → / → mnmE membrane protein insertase/tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase
RA 3,886,757 T→C 5.4% intergenic (+35/‑71) yidC → / → mnmE membrane protein insertase/tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase
RA 3,888,219 T→A 9.3% intergenic (+27/‑216) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,224:1 +A 8.2% intergenic (+32/‑211) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,906,826 T→C 5.9% intergenic (‑259/+27) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,906,828 A→T 5.8% intergenic (‑261/+25) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,906,830 G→A 5.7% intergenic (‑263/+23) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,947,332 A→T 5.6% A212A (GCT→GCA)  hdfR ← flhDC operon transcriptional repressor
RA 3,947,335 A→T 5.6% S211S (TCT→TCA)  hdfR ← flhDC operon transcriptional repressor
RA 3,959,480 A→T 7.2% intergenic (+35/+52) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,959,481 C→G 7.2% intergenic (+36/+51) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,959,515 T→A 7.5% intergenic (+70/+17) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,970,813 Δ1 bp 7.5% coding (681/1131 nt) wecB → UDP‑N‑acetyl glucosamine‑2‑epimerase
RA 3,970,817:1 +G 7.6% coding (685/1131 nt) wecB → UDP‑N‑acetyl glucosamine‑2‑epimerase
RA 4,009,005 A→C 5.2% S19A (TCG→GCG)  rhtB ← homoserine, homoserine lactone and S‑methyl‑methionine efflux pump
RA 4,017,216:1 +A 5.1% intergenic (+24/‑117) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,017,222 Δ1 bp 5.8% intergenic (+30/‑111) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,022,379 A→T 6.1% L54F (TTA→TTT)  tatB → TatABCE protein translocation system subunit
RA 4,022,380 A→T 6.1% K55* (AAA→TAA)  tatB → TatABCE protein translocation system subunit
RA 4,051,259 G→T 14.3% noncoding (224/245 nt) csrC → CsrC sRNA sequesters CsrA, a carbon flux regulator
RA 4,060,261 G→T 11.6% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 11.7% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,062,371 A→T 6.6% N42I (AAT→ATT)  yihN → MFS transporter family protein
RA 4,070,410 C→A 8.0% intergenic (‑9/+105) yihR ← / ← yihS putative sulphoquinovose mutarotase/sulphoquinovose isomerase
RA 4,070,413 T→G 9.1% intergenic (‑12/+102) yihR ← / ← yihS putative sulphoquinovose mutarotase/sulphoquinovose isomerase
RA 4,088,091 G→C 15.0% intergenic (+34/+16) yiiG → / ← frvR DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain
RA 4,117,005 T→A 100% D73V (GAT→GTT)  glpK ← glycerol kinase
RA 4,121,959 T→G 6.0% N110T (AAC→ACC)  hslV ← peptidase component of the HslUV protease
RA 4,121,962 C→A 6.0% G109V (GGT→GTT)  hslV ← peptidase component of the HslUV protease
RA 4,127,251 C→T 8.2% intergenic (+26/+35) rpmE → / ← yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA 4,127,252 A→G 8.0% intergenic (+27/+34) rpmE → / ← yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA 4,177,171 T→A 7.2% intergenic (+43/‑187) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,177,172 T→A 6.7% intergenic (+44/‑186) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,213,131 C→T 6.9% noncoding (92/120 nt) rrfE → 5S ribosomal RNA of rrnE operon
RA 4,241,715 G→T 6.5% C180* (TGC→TGA) ‡ xylE ← D‑xylose transporter
RA 4,241,716 C→G 6.4% C180S (TGC→TCC) ‡ xylE ← D‑xylose transporter
RA 4,241,717 A→C 6.4% C180G (TGC→GGC) ‡ xylE ← D‑xylose transporter
RA 4,261,358 T→A 5.2% intergenic (+52/‑311) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,261,359 T→A 5.1% intergenic (+53/‑310) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,262,250 G→C 7.9% G194G (GGG→GGC)  dusA → tRNA‑dihydrouridine synthase A
RA 4,262,255 G→C 7.5% S196T (AGC→ACC)  dusA → tRNA‑dihydrouridine synthase A
RA 4,270,142 G→A 9.5% intergenic (+15/‑96) aphA → / → yjbQ acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase
RA 4,270,144 G→C 9.7% intergenic (+17/‑94) aphA → / → yjbQ acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase
RA 4,270,146 T→C 9.8% intergenic (+19/‑92) aphA → / → yjbQ acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase
RA 4,280,219 A→C 6.2% E80D (GAA→GAC)  yjcE → putative cation/proton antiporter
RA 4,280,224 G→T 6.1% G82V (GGT→GTT)  yjcE → putative cation/proton antiporter
RA 4,291,512 G→A 5.2% M1M (GTG→ATG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,291,513 T→C 5.2% M1A (GTG→GCG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,296,060 C→T 17.3% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,307,294 A→T 7.3% L169Q (CTG→CAG)  alsK ← D‑allose kinase
RA 4,307,298 G→A 8.7% P168S (CCC→TCC)  alsK ← D‑allose kinase
RA 4,335,654 T→A 6.2% intergenic (‑64/+40) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,335,655 T→A 6.3% intergenic (‑65/+39) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,347,285 C→G 6.9% M14I (ATG→ATC)  fumB ← anaerobic class I fumarate hydratase (fumarase B)
RA 4,347,288 C→G 6.7% P13P (CCG→CCC)  fumB ← anaerobic class I fumarate hydratase (fumarase B)
RA 4,356,445 A→T 14.0% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 14.0% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,362,528 G→A 8.4% intergenic (‑175/+23) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,362,529 T→C 8.5% intergenic (‑176/+22) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,366,854 T→G 21.4% intergenic (‑81/+37) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,366,855 C→A 21.4% intergenic (‑82/+36) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,376,280 G→A 5.6% intergenic (+15/‑37) efp → / → ecnA polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA 4,376,291 T→C 5.2% intergenic (+26/‑26) efp → / → ecnA polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA 4,392,617 C→G 5.6% noncoding (35/76 nt) glyY → tRNA‑Gly
RA 4,395,454 T→C 6.0% C463C (TGT→TGC)  nnr → bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase
RA 4,395,455 G→A 6.0% A464T (GCA→ACA)  nnr → bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase
RA 4,450,955 A→G 7.1% intergenic (+37/‑103) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,956 A→C 7.1% intergenic (+38/‑102) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,962 T→G 9.2% intergenic (+44/‑96) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,963 C→A 9.7% intergenic (+45/‑95) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,969 G→T 8.3% intergenic (+51/‑89) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,970 C→T 8.3% intergenic (+52/‑88) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,470,951 A→C 11.5% intergenic (‑38/+35) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,952 T→C 11.6% intergenic (‑39/+34) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,957 G→A 12.0% intergenic (‑44/+29) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,958 G→T 11.9% intergenic (‑45/+28) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,520,500 Δ1 bp 14.3% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 13.6% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,551,422 T→A 8.1% intergenic (‑126/‑214) gntP ← / → uxuA fructuronate transporter/mannonate hydrolase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423750–3424234 3424538–3424238 5–789 48 [46] [45] 49 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 274620 =NA (NA)9 (0.080) 6/234 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 291401NA (NA)6 (0.050) 6/252 NT 5.9% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 1292996 96 (0.790)intergenic (‑74/‑531) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 = 291401NA (NA)5 (0.040) 5/252 NT 5.4% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 1293045 88 (0.720)intergenic (‑123/‑482) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 = 316201NA (NA)3 (0.030) 3/234 NT NA noncoding (973/1255 nt) IS3 repeat region
?NC_000913 = 316220 NA (NA)noncoding (992/1255 nt) IS3 repeat region
* ? NC_000913 = 36996680 (0.650)6 (0.050) 6/240 NT 7.5% coding (1356/1665 nt) mhpA 3‑(3‑hydroxyphenyl)propionate hydroxylase
?NC_000913 = 369993 72 (0.620)coding (1383/1665 nt) mhpA 3‑(3‑hydroxyphenyl)propionate hydroxylase
* ? NC_000913 382271 =NA (NA)3 (0.030) 3/240 NT NA noncoding (1012/1331 nt) IS2 repeat region
?NC_000913 382330 = NA (NA)noncoding (1071/1331 nt) IS2 repeat region
* ? NC_000913 729837 =NA (NA)3 (0.030) 3/246 NT NA coding (255/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 729868 = NA (NA)coding (286/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 1084726NA (NA)3 (0.030) 3/236 NT NA noncoding (45/86 nt) REP95 (repetitive extragenic palindromic) element; contains 2 REP sequences REP95 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 1084773 NA (NA)intergenic (+126/‑219) efeB/phoH deferrrochelatase, periplasmic/ATP‑binding protein; putative PhoH family P‑loop ATPase
* ? NC_000913 = 118637273 (0.600)7 (0.060) 7/242 NT 8.6% coding (529/1227 nt) pepT peptidase T
?NC_000913 = 1186406 78 (0.660)coding (563/1227 nt) pepT peptidase T
* ? NC_000913 1207790 =47 (0.380)71 (0.670) 62/220 NT 57.5% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 64 (0.600)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780547 (0.380)46 (0.430) 41/220 NT 46.7% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 64 (0.600)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 12994980 (0.000)102 (0.860) 76/244 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 1310534132 (1.080)8 (0.070) 8/238 NT 5.8% intergenic (‑265/+35) kch/yciI voltage‑gated potassium channel/putative DGPF domain‑containing enzyme
?NC_000913 = 1310539 134 (1.160)intergenic (‑270/+30) kch/yciI voltage‑gated potassium channel/putative DGPF domain‑containing enzyme
* ? NC_000913 = 1456149102 (0.830)8 (0.070) 8/240 NT 6.8% coding (225/498 nt) paaD ring 1,2‑phenylacetyl‑CoA epoxidase subunit
?NC_000913 = 1456169 121 (1.040)coding (245/498 nt) paaD ring 1,2‑phenylacetyl‑CoA epoxidase subunit
* ? NC_000913 1718525 =87 (0.710)5 (0.040) 4/242 NT 5.6% coding (1078/1110 nt) anmK anhydro‑N‑acetylmuramic acid kinase
?NC_000913 1718552 = 85 (0.720)coding (1051/1110 nt) anmK anhydro‑N‑acetylmuramic acid kinase
* ? NC_000913 = 1905852115 (0.940)6 (0.050) 5/238 NT 5.2% coding (165/567 nt) mntP putative Mn(2+) efflux pump, mntR‑regulated
?NC_000913 = 1905868 108 (0.940)coding (181/567 nt) mntP putative Mn(2+) efflux pump, mntR‑regulated
* ? NC_000913 2304923 =17 (0.140)6 (0.050) 4/238 NT 31.5% noncoding (507/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 2304955 = 10 (0.090)noncoding (539/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 2891663 =71 (0.580)5 (0.040) 5/244 NT 6.6% coding (236/1800 nt) cysJ sulfite reductase, alpha subunit, flavoprotein
?NC_000913 2891690 = 72 (0.610)coding (209/1800 nt) cysJ sulfite reductase, alpha subunit, flavoprotein
* ? NC_000913 = 3241202107 (0.880)9 (0.080) 8/236 NT 7.6% coding (543/552 nt) ygjV Imp‑YgjV family inner membrane protein
?NC_000913 = 3241215 119 (1.040)coding (530/552 nt) ygjV Imp‑YgjV family inner membrane protein
* ? NC_000913 3620569 =NA (NA)19 (0.160) 14/240 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3621553NA (NA)3 (0.030) 3/238 NT 100% coding (2362/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3621603 0 (0.000)coding (2412/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3650711 =NA (NA)4 (0.030) 4/248 NT NA intergenic (+49/‑580) arsC/yhiS arsenate reductase/pseudogene
?NC_000913 3650745 = NA (NA)noncoding (34/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 3721045 =148 (1.210)372 (3.070) 162/250 NT 73.9% noncoding (413/1443 nt) IS150 repeat region
?NC_000913 = 3839774 116 (0.960)coding (220/819 nt) nlpA cytoplasmic membrane lipoprotein‑28
* ? NC_000913 = 392742978 (0.640)8 (0.070) 8/228 NT 9.2% coding (275/993 nt) asnA asparagine synthetase A
?NC_000913 = 3927444 87 (0.790)coding (290/993 nt) asnA asparagine synthetase A
* ? NC_000913 = 404068312 (0.100)20 (0.170) 7/248 NT 31.8% intergenic (+47/+223) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
?NC_000913 = 4213162 74 (0.620)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
* ? NC_000913 = 4376625110 (0.900)6 (0.050) 6/242 NT 5.3% coding (73/147 nt) ecnB entericidin B membrane lipoprotein
?NC_000913 = 4376635 109 (0.930)coding (83/147 nt) ecnB entericidin B membrane lipoprotein
* ? NC_000913 = 454269065 (0.530)4 (0.040) 4/234 NT 5.3% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 82 (0.720)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)