mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 83,355 | G→A | 6.7% | Q59* (CAA→TAA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 95,070 | G→A | 5.3% | V141I (GTA→ATA) ‡ | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 95,071 | T→C | 5.3% | V141A (GTA→GCA) ‡ | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 155,285 | T→C | 6.1% | I48V (ATT→GTT) | htrE ← | putative outer membrane usher protein |
| RA | 164,557 | G→C | 6.0% | intergenic (+23/‑173) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,558 | T→A | 5.8% | intergenic (+24/‑172) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 218,459 | A→G | 9.3% | L106P (CTC→CCC) | proS ← | prolyl‑tRNA synthetase |
| RA | 243,632 | T→C | 6.1% | I30I (ATT→ATC) | gmhA → | D‑sedoheptulose 7‑phosphate isomerase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 263,316 | T→C | 5.2% | intergenic (‑104/+12) | ykfN ← / ← ykfI | pseudogene, YdiA family/CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 285,846 | T→A | 6.2% | F151Y (TTC→TAC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 292,302 | C→G | 7.3% | intergenic (+71/+20) | yagJ → / ← yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 299,635 | C→T | 9.1% | G434S (GGT→AGT) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 324,133 | C→T | 5.5% | Q126* (CAG→TAG) | ykgG → | LutC family protein; putative electron transport chain YkgEFG component |
| RA | 394,892 | C→T | 9.0% | R129R (CGC→CGT) | yaiV → | putative transcriptional regulator |
| RA | 411,489 | T→A | 9.3% | I331I (ATA→ATT) | araJ ← | L‑arabinose‑inducible putative transporter, MFS family |
| RA | 423,989 | A→C | 7.0% | N491T (AAC→ACC) ‡ | malZ → | maltodextrin glucosidase |
| RA | 423,990 | C→G | 6.8% | N491K (AAC→AAG) ‡ | malZ → | maltodextrin glucosidase |
| RA | 464,354 | C→A | 6.7% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 6.7% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 6.3% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 508,601 | C→A | 5.3% | intergenic (+42/+274) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 516,487 | C→T | 6.2% | A190V (GCC→GTC) | fetA → | iron export ABC transporter ATPase; peroxide resistance protein |
| RA | 531,581 | A→G | 6.7% | L214S (TTG→TCG) | allS ← | allD operon transcriptional activator |
| RA | 531,584 | C→T | 6.7% | R213Q (CGA→CAA) | allS ← | allD operon transcriptional activator |
| RA | 553,495 | C→T | 6.0% | R149H (CGC→CAC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 594,946 | C→A | 7.7% | Q166H (CAG→CAT) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,948 | G→C | 7.7% | Q166E (CAG→GAG) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,950 | T→G | 7.6% | H165P (CAT→CCT) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 600,179 | C→T | 6.7% | A489V (GCG→GTG) | cusA → | copper/silver efflux system, membrane component |
| RA | 610,711 | G→A | 6.3% | P595L (CCG→CTG) | fepA ← | ferrienterobactin outer membrane transporter |
| RA | 611,329 | G→A | 6.4% | T389M (ACG→ATG) | fepA ← | ferrienterobactin outer membrane transporter |
| RA | 658,577 | G→A | 5.5% | pseudogene (353/594 nt) | ybeM → | pseudogene, C‑N hydrolase superfamily homology;putative enzyme; Not classified; putative amidase |
| RA | 690,901 | Δ1 bp | 5.1% | intergenic (‑20/+5) | lnt ← / ← ybeX | apolipoprotein N‑acyltransferase/putative ion transport |
| RA | 699,556 | C→T | 8.3% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,559 | A→G | 8.2% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 701,130 | T→C | 5.2% | P155P (CCA→CCG) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 716,572 | T→C | 5.9% | pseudogene (26/651 nt) | ybfG ← | pseudogene |
| RA | 781,668 | C→T | 7.3% | intergenic (+16/‑417) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,670 | A→T | 7.2% | intergenic (+18/‑415) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,672 | A→G | 6.9% | intergenic (+20/‑413) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 807,018 | G→A | 5.8% | G88G (GGC→GGT) | ybhC ← | acyl‑CoA thioesterase, lipoprotein |
| RA | 818,694 | C→T | 5.8% | A42V (GCG→GTG) | moaC → | molybdopterin biosynthesis, protein C |
| RA | 843,342 | A→T | 8.2% | V713V (GTT→GTA) ‡ | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 843,343 | A→T | 8.2% | V713D (GTT→GAT) ‡ | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 843,347 | C→G | 8.5% | G712R (GGC→CGC) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 853,467 | G→A | 8.0% | T95T (ACG→ACA) | mntR → | Mn(2+)‑responsive manganese regulon transcriptional regulator |
| RA | 857,576 | T→C | 5.7% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 5.7% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 875,531 | C→T | 10.2% | T66M (ACG→ATG) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 928,207 | T→A | 7.8% | Q330L (CAA→CTA) | cydC ← | glutathione/cysteine ABC transporter export permease/ATPase |
| RA | 930,998 | C→T | 6.9% | intergenic (‑36/+87) | cydD ← / ← trxB | glutathione/cysteine ABC transporter export permease/ATPase/thioredoxin reductase, FAD/NAD(P)‑binding |
| RA | 975,202 | G→A | 5.5% | R295H (CGC→CAC) | mukF → | chromosome condensin MukBEF, kleisin‑like subunit, binds calcium |
| RA | 1,000,101 | G→T | 5.7% | A296S (GCC→TCC) | elfC → | putative outer membrane fimbrial subunit export usher protein |
| RA | 1,018,983 | A→T | 11.9% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 11.8% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,069,287 | G→T | 6.3% | L185M (CTG→ATG) | rutG ← | pyrimidine permease |
| RA | 1,085,592 | G→C | 8.9% | V201L (GTC→CTC) | phoH → | ATP‑binding protein; putative PhoH family P‑loop ATPase |
| RA | 1,153,208 | T→C | 10.5% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 8.2% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 8.3% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 8.1% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,174,077 | G→A | 9.5% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 9.5% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,177,156 | A→G | 6.7% | N180D (AAC→GAC) | lolD → | outer membrane‑specific lipoprotein transporter subunit |
| RA | 1,196,319 | C→G | 5.9% | G399G (GGC→GGG) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,198,675 | A→G | 5.5% | intergenic (‑438/‑20) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage |
| RA | 1,224,724 | T→C | 6.0% | E213G (GAG→GGG) | minD ← | inhibitor of FtsZ ring polymerization; chromosome‑membrane tethering protein; membrane ATPase of the MinCDEE system |
| RA | 1,260,904 | A→G | 5.4% | intergenic (‑101/+24) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,281,545 | T→C | 5.7% | M561T (ATG→ACG) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,296,331 | G→A | 6.8% | T597T (ACC→ACT) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,333,941 | A→G | 5.7% | S29S (TCA→TCG) | cysB → | N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor |
| RA | 1,346,451 | C→T | 6.0% | D98N (GAC→AAC) | gmr ← | cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of RNase II stability |
| RA | 1,354,905 | G→T | 6.5% | T189N (ACC→AAC) | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,372,052 | A→G | 6.6% | K48K (AAA→AAG) | ycjN → | putative ABC sugar transporter periplasmic binding protein |
| RA | 1,444,587 | G→A | 6.1% | G513R (GGG→AGG) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,446,411 | C→A | 8.3% | M291I (ATG→ATT) | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,493,194 | G→C | 5.5% | S242T (AGT→ACT) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,499,361 | A→G | 8.4% | N142D (AAC→GAC) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,365 | A→T | 9.1% | Q143L (CAG→CTG) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,369 | C→T | 8.9% | V144V (GTC→GTT) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,501,769 | C→T | 6.5% | R70C (CGC→TGC) | tehB → | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein |
| RA | 1,523,429 | A→G | 6.0% | K41K (AAA→AAG) | yncE → | ATP‑binding protein, periplasmic, function unknown |
| RA | 1,539,982 | C→T | 5.9% | R870H (CGC→CAC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,559,537 | G→A | 6.7% | A125V (GCA→GTA) | ddpC ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,654,745 | C→T | 6.5% | D133N (GAT→AAT) | rspA ← | bifunctional D‑altronate/D‑mannonate dehydratase |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,689,817 | C→A | 5.4% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 5.4% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 5.6% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,701,108 | A→T | 7.7% | N51I (AAT→ATT) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| RA | 1,757,688 | T→A | 8.8% | intergenic (+31/+33) | lpp → / ← ldtE | murein lipoprotein/murein L,D‑transpeptidase |
| RA | 1,797,388 | G→T | 8.7% | P186Q (CCG→CAG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,797,391 | A→C | 8.9% | L185R (CTG→CGG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,827,811 | T→G | 5.7% | K150T (AAA→ACA) | astB ← | succinylarginine dihydrolase |
| RA | 1,827,816 | C→A | 5.1% | L148L (CTG→CTT) | astB ← | succinylarginine dihydrolase |
| RA | 1,864,681 | A→G | 11.3% | T278A (ACC→GCC) | yeaD → | D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,864,768 | T→C | 8.9% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,888,030 | Δ1 bp | 6.1% | intergenic (‑39/+31) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,888,034:1 | +T | 6.1% | intergenic (‑43/+27) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,936,823 | A→G | 5.1% | M58V (ATG→GTG) | yebK → | putative DNA‑binding transcriptional regulator |
| RA | 1,963,758 | A→G | 7.5% | D431D (GAT→GAC) | flhA ← | putative flagellar export pore protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,987,442 | Δ1 bp | 7.7% | intergenic (+14/+65) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 1,987,450:1 | +A | 5.5% | intergenic (+22/+57) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 2,008,558 | A→T | 8.5% | A94A (GCA→GCT) | yedE → | UPF0394 family sulphur transport domain‑containing inner membrane protein |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,180,783 | A→C | 5.9% | D230A (GAC→GCC) | yegU → | ADP‑ribosylglycohydrolase family protein |
| RA | 2,218,893 | C→T | 6.0% | G197S (GGC→AGC) | osmF ← | putative ABC transporter periplasmic binding protein |
| RA | 2,236,306 | G→A | 10.8% | G348R (GGA→AGA) | preA → | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
| RA | 2,259,686 | A→G | 12.1% | intergenic (‑390/+33) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,690 | G→A | 8.5% | intergenic (‑394/+29) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,693 | A→T | 8.1% | intergenic (‑397/+26) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,696 | T→C | 8.1% | intergenic (‑400/+23) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,700 | C→T | 9.2% | intergenic (‑404/+19) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,287,682 | C→A | 5.3% | pseudogene (1233/2525 nt) | yejO ← | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,305,085 | A→G | 15.4% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 15.4% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 14.9% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,311,616 | C→T | 6.3% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,311,619 | A→G | 6.3% | intergenic (‑85/+27) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,324,596 | C→T | 7.1% | A163V (GCG→GTG) | atoA → | acetyl‑CoA:acetoacetyl‑CoA transferase, beta subunit |
| RA | 2,364,995 | T→G | 6.4% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 6.8% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,368,320 | G→A | 7.1% | Q94Q (CAG→CAA) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,432,985 | A→G | 6.5% | intergenic (‑43/+27) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,432,990 | G→C | 6.4% | intergenic (‑48/+22) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,434,956 | C→T | 6.3% | L227L (TTG→TTA) | truA ← | tRNA pseudouridine(38‑40) synthase |
| RA | 2,596,873 | Δ1 bp | 10.2% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 10.0% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,638,584 | A→T | 8.3% | F23L (TTT→TTA) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,732,027 | A→G | 6.8% | M716T (ATG→ACG) | clpB ← | protein disaggregation chaperone |
| RA | 2,757,961 | C→T | 5.6% | A214T (GCA→ACA) | yfjH ← | CP4‑57 prophage; uncharacterized protein |
| RA | 2,761,620 | T→G | 5.4% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 5.4% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,859,242 | A→G | 5.7% | N717S (AAT→AGT) | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,863,768 | A→G | 6.8% | Q59R (CAG→CGG) | ygbL → | putative class II aldolase |
| RA | 2,863,772 | G→A | 7.8% | R60R (CGG→CGA) | ygbL → | putative class II aldolase |
| RA | 2,863,777 | C→G | 5.3% | S62C (TCC→TGC) ‡ | ygbL → | putative class II aldolase |
| RA | 2,863,778 | C→G | 6.6% | S62S (TCC→TCG) ‡ | ygbL → | putative class II aldolase |
| RA | 2,863,783 | T→C | 5.3% | V64A (GTC→GCC) | ygbL → | putative class II aldolase |
| RA | 2,863,787 | C→T | 5.3% | A65A (GCC→GCT) | ygbL → | putative class II aldolase |
| RA | 2,868,804 | A→T | 6.5% | intergenic (‑51/+89) | nlpD ← / ← pcm | activator of AmiC murein hydrolase activity, lipoprotein/L‑isoaspartate protein carboxylmethyltransferase type II |
| RA | 2,907,316 | T→C | 6.2% | E209G (GAA→GGA) | eno ← | enolase |
| RA | 2,929,056 | A→G | 7.3% | A276A (GCA→GCG) | sdaC → | putative serine transporter |
| RA | 2,958,119 | G→A | 11.3% | P256S (CCG→TCG) | ptrA ← | protease III |
| RA | 2,961,248 | A→T | 8.3% | L394Q (CTG→CAG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,961,251 | A→T | 8.4% | L393Q (CTG→CAG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,968,103 | A→G | 6.2% | L111S (TTA→TCA) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 3,006,513 | G→A | 5.5% | L84L (CTG→CTA) | ygeW → | putative carbamoyltransferase |
| RA | 3,009,617 | T→C | 5.9% | V285A (GTA→GCA) | ygeY → | putative peptidase |
| RA | 3,023,295 | G→T | 5.1% | P660P (CCG→CCT) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,082,040 | C→A | 5.9% | A43E (GCG→GAG) | loiP → | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein |
| RA | 3,096,388 | T→C | 5.5% | N2N (AAT→AAC) | yggU → | UPF0235 family protein |
| RA | 3,132,926 | G→T | 5.9% | P96Q (CCG→CAG) | yghR ← | putative ATP‑binding protein |
| RA | 3,162,811 | A→G | 9.6% | I224T (ATA→ACA) | plsC ← | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| RA | 3,162,815 | A→T | 10.1% | S223T (TCG→ACG) | plsC ← | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| RA | 3,162,816 | A→T | 10.4% | R222R (CGT→CGA) | plsC ← | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| RA | 3,162,820 | C→T | 10.3% | C221Y (TGT→TAT) | plsC ← | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| RA | 3,176,799 | T→C | 6.1% | E12G (GAG→GGG) | cpdA ← | 3',5' cAMP phosphodiesterase |
| RA | 3,216,435 | T→A | 7.2% | E19D (GAA→GAT) | yqjH ← | putative siderophore interacting protein |
| RA | 3,288,032 | C→A | 5.2% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,299,574 | C→A | 7.1% | P114P (CCG→CCT) | yhbP ← | UPF0306 family protein |
| RA | 3,322,672 | C→G | 5.4% | intergenic (‑167/+61) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,326,411 | G→C | 6.2% | S175R (AGC→AGG) | ftsH ← | protease, ATP‑dependent zinc‑metallo |
| RA | 3,330,415 | Δ1 bp | 6.3% | intergenic (+19/+167) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,330,419:1 | +T | 6.7% | intergenic (+23/+163) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,418,629 | T→C | 5.3% | intergenic (+18/‑413) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,423,405 | A→G | 6.9% | intergenic (+211/+18) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,437,908 | T→A | 5.6% | intergenic (+14/‑116) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,909 | A→T | 5.6% | intergenic (+15/‑115) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,910 | A→T | 5.2% | intergenic (+16/‑114) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,911 | T→A | 5.6% | intergenic (+17/‑113) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,478,932 | A→G | 6.5% | L559P (CTC→CCC) | kefB ← | potassium:proton antiporter |
| RA | 3,490,177 | C→T | 5.5% | A2T (GCA→ACA) | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| RA | 3,505,785 | A→T | 6.1% | I79N (ATT→AAT) | yhfS ← | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,508,092 | C→A | 5.6% | E167* (GAG→TAG) | php ← | phosphotriesterase homology protein |
| RA | 3,529,926 | G→A | 5.7% | A51A (GCG→GCA) | hslO → | heat shock protein Hsp33 |
| RA | 3,544,096 | A→G | 6.2% | V250A (GTG→GCG) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,556,119 | T→C | 5.9% | N244S (AAT→AGT) | rtcA ← | RNA 3'‑terminal phosphate cyclase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,569,431 | A→G | 9.7% | I630T (ATT→ACT) | glgX ← | glycogen debranching enzyme |
| RA | 3,569,436 | G→A | 9.5% | H628H (CAC→CAT) ‡ | glgX ← | glycogen debranching enzyme |
| RA | 3,569,437 | T→C | 9.3% | H628R (CAC→CGC) ‡ | glgX ← | glycogen debranching enzyme |
| RA | 3,569,442 | C→T | 9.0% | E626E (GAG→GAA) | glgX ← | glycogen debranching enzyme |
| RA | 3,581,121 | C→T | 5.1% | intergenic (‑105/‑17) | ryhB ← / → yhhY | sRNA antisense regulator mediating positive Fur regulon response, Hfq‑dependent; global iron regulator/aminoacyl nucleotide detoxifying acetyltransferase |
| RA | 3,632,645 | G→T | 6.2% | intergenic (‑55/+207) | yhiJ ← / ← yhiL | DUF4049 family protein/pseudogene, DUF4049 family protein |
| RA | 3,671,075 | A→G | 6.1% | K495R (AAG→AGG) | treF → | cytoplasmic trehalase |
| RA | 3,722,300 | G→T | 5.3% | intergenic (+195/+28) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,781,051 | C→G | 6.8% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,845,746 | G→A | 8.2% | intergenic (+16/+30) | adeD → / ← uhpT | cryptic adenine deaminase/hexose phosphate transporter |
| RA | 3,845,748 | C→G | 8.3% | intergenic (+18/+28) | adeD → / ← uhpT | cryptic adenine deaminase/hexose phosphate transporter |
| RA | 3,845,750 | T→C | 8.6% | intergenic (+20/+26) | adeD → / ← uhpT | cryptic adenine deaminase/hexose phosphate transporter |
| RA | 3,852,553 | C→A | 6.7% | A78S (GCG→TCG) | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,852,558 | T→A | 7.0% | K76I (AAA→ATA) ‡ | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,852,559 | T→A | 7.0% | K76* (AAA→TAA) ‡ | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,877,558 | G→C | 8.0% | intergenic (‑93/+147) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
| RA | 3,888,245 | T→G | 6.7% | intergenic (+53/‑190) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,891,502 | C→G | 6.3% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 6.2% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 6.0% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,907,100 | T→C | 6.0% | E160G (GAA→GGA) | phoU ← | negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,912,161 | A→G | 6.1% | L503P (CTG→CCG) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,948,276 | G→A | 5.2% | C64Y (TGC→TAC) | yifE → | UPF0438 family protein |
| RA | 3,956,465 | A→G | 6.9% | I379V (ATC→GTC) | ilvA → | l‑threonine dehydratase, biosynthetic; also known as threonine deaminase |
| RA | 3,959,924 | A→T | 7.7% | intergenic (‑111/+88) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,925 | A→T | 7.7% | intergenic (‑112/+87) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,926 | A→T | 7.8% | intergenic (‑113/+86) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,991,331 | G→T | 27.8% | G60V (GGC→GTC) | cyaA → | adenylate cyclase |
| RA | 3,992,392 | G→T | 25.6% | D414Y (GAT→TAT) | cyaA → | adenylate cyclase |
| JC JC | 3,992,705 | IS5 (+) +4 bp | 47.1% | coding (1553‑1556/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,000,304 | Δ1 bp | 8.0% | coding (753/765 nt) | yigE ← | DUF2233 family protein |
| RA | 4,000,308:1 | +G | 7.7% | coding (749/765 nt) | yigE ← | DUF2233 family protein |
| RA | 4,028,758 | G→A | 5.5% | V5V (GTC→GTT) | fadA ← | 3‑ketoacyl‑CoA thiolase (thiolase I) |
| RA | 4,060,261 | G→T | 5.3% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 5.1% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,062,371 | A→T | 5.6% | N42I (AAT→ATT) | yihN → | MFS transporter family protein |
| RA | 4,072,411 | C→T | 5.3% | A81T (GCC→ACC) | yihT ← | 6‑deoxy‑6‑sulphofructose‑1‑phosphate aldolase |
| RA | 4,088,377 | A→G | 8.3% | G493G (GGT→GGC) | frvR ← | putative frv operon regulator; contains a PTS EIIA domain |
| RA | 4,096,388 | C→A | 5.7% | R354L (CGG→CTG) | rhaB ← | rhamnulokinase |
| RA | 4,116,528 | C→T | 25.0% | G232D (GGC→GAC) | glpK ← | glycerol kinase |
| RA | 4,117,005 | T→G | 72.0% | D73A (GAT→GCT) | glpK ← | glycerol kinase |
| RA | 4,117,122 | C→T | 9.7% | R34H (CGC→CAC) | glpK ← | glycerol kinase |
| RA | 4,117,687 | A→G | 6.2% | F135S (TTC→TCC) | glpF ← | glycerol facilitator |
| RA | 4,161,974 | T→A | 7.3% | A68A (GCT→GCA) | yijD → | DUF1422 family inner membrane protein |
| RA | 4,189,525 | C→G | 6.3% | S1392R (AGC→AGG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,227,560 | T→C | 5.3% | intergenic (+49/‑171) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,280,402 | Δ1 bp | 6.9% | coding (423/1650 nt) | yjcE → | putative cation/proton antiporter |
| RA | 4,296,060 | C→T | 20.9% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,312,080 | G→C | 5.1% | intergenic (‑38/+21) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,083 | G→C | 5.4% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,089 | A→G | 5.1% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,326,341 | T→C | 8.5% | intergenic (‑600/+58) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,348,977 | C→T | 6.2% | intergenic (‑233/+338) | dcuB ← / ← dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS |
| RA | 4,356,445 | A→T | 6.6% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 6.6% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 5.8% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 5.8% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,376,819 | A→T | 6.1% | intergenic (+120/‑56) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,376,822 | A→T | 6.1% | intergenic (+123/‑53) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,405,056 | G→A | 5.4% | A124T (GCG→ACG) | purA → | adenylosuccinate synthetase |
| RA | 4,422,887 | G→A | 10.4% | A14A (GCG→GCA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,422,895 | C→G | 9.6% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,432,953 | A→T | 5.3% | M35K (ATG→AAG) | ytfF ← | DMT transporter family inner membrane protein |
| RA | 4,439,845 | T→A | 6.2% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,443,212 | C→T | 5.9% | D277D (GAC→GAT) | tamA → | translocation and assembly module for autotransporter export, outer membrane subunit |
| RA | 4,468,881 | A→G | 5.1% | T419T (ACA→ACG) | mgtA → | magnesium transporter |
| RA | 4,520,500 | Δ1 bp | 7.3% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 7.1% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,541,195 | C→A | 5.4% | P80Q (CCG→CAG) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,580,619 | T→C | 5.6% | K282E (AAA→GAA) | hsdS ← | specificity determinant for hsdM and hsdR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423736–3424234 | 3424575–3424239 | 6–840 | 28 [27] | [27] 28 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 24161 = | 70 (1.060) | 4 (0.060) | 3/268 | NT | 5.8% | coding (1771/2817 nt) | ileS | isoleucyl‑tRNA synthetase |
| ? | NC_000913 | 24182 = | 61 (0.930) | coding (1792/2817 nt) | ileS | isoleucyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 8 (0.120) | 7/262 | NT | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 726472 = | 39 (0.590) | 3 (0.050) | 3/260 | NT | 6.7% | coding (565/2049 nt) | kdpB | potassium translocating ATPase, subunit B |
| ? | NC_000913 | 726511 = | 46 (0.720) | coding (526/2049 nt) | kdpB | potassium translocating ATPase, subunit B | |||||
| * | ? | NC_000913 | 765068 = | 60 (0.910) | 3 (0.050) | 3/258 | NT | 5.2% | intergenic (+19/+85) | sucD/mngR | succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit/transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon |
| ? | NC_000913 | 765107 = | 51 (0.810) | intergenic (+58/+46) | sucD/mngR | succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit/transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon | |||||
| * | ? | NC_000913 | 1207790 = | 22 (0.330) | 37 (0.640) | 25/238 | NT | 57.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 36 (0.620) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 27 (0.410) | 31 (0.530) | 26/238 | NT | 50.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 36 (0.620) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1326780 | 47 (0.710) | 4 (0.070) | 4/246 | NT | 8.1% | intergenic (+139/‑72) | yciQ/rluB | enhancer of membrane protein expression; putative inner membrane protein/23S rRNA pseudouridine(2605) synthase |
| ? | NC_000913 | = 1326787 | 48 (0.800) | intergenic (+146/‑65) | yciQ/rluB | enhancer of membrane protein expression; putative inner membrane protein/23S rRNA pseudouridine(2605) synthase | |||||
| * | ? | NC_000913 | 1512011 = | 42 (0.640) | 3 (0.050) | 3/262 | NT | 6.1% | coding (358/1146 nt) | ydcS | putative ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1512028 = | 51 (0.790) | coding (375/1146 nt) | ydcS | putative ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 2487982 | 58 (0.880) | 3 (0.050) | 3/252 | NT | 5.1% | intergenic (+15/+41) | evgS/yfdE | hybrid sensory histidine kinase in two‑component regulatory system with EvgA/acetyl‑CoA:oxalate CoA‑transferase |
| ? | NC_000913 | = 2487991 | 57 (0.920) | intergenic (+24/+32) | evgS/yfdE | hybrid sensory histidine kinase in two‑component regulatory system with EvgA/acetyl‑CoA:oxalate CoA‑transferase | |||||
| * | ? | NC_000913 | 3214941 = | NA (NA) | 4 (0.070) | 3/250 | NT | 8.9% | intergenic (+53/+26) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| ? | NC_000913 | 3214966 = | 41 (0.670) | intergenic (+78/+1) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
| * | ? | NC_000913 | = 3377767 | 70 (1.060) | 5 (0.080) | 5/250 | NT | 7.0% | intergenic (‑347/+48) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| ? | NC_000913 | 4189605 = | 69 (1.130) | intergenic (+32/‑181) | rpoC/yjaZ | RNA polymerase, beta prime subunit/stationary phase growth adaptation protein | |||||
| * | ? | NC_000913 | 3721045 = | 94 (1.420) | 172 (2.620) | 109/268 | NT | 68.2% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 67 (1.020) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | = 3764228 | 0 (0.000) | 3 (0.050) | 3/260 | NT | 100% | coding (2046/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3764260 | NA (NA) | coding (2078/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3977603 | 52 (0.790) | 5 (0.080) | 3/260 | NT | 8.9% | coding (79/1080 nt) | wecF | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| ? | NC_000913 | = 3977623 | 52 (0.820) | coding (99/1080 nt) | wecF | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase | |||||
| * | ? | NC_000913 | = 4040727 | 26 (0.390) | 4 (0.060) | 4/252 | NT | 14.7% | intergenic (+91/+179) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4040732 | 22 (0.360) | intergenic (+96/+174) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | = 4168330 | 48 (0.730) | 3 (0.050) | 3/270 | NT | 7.2% | intergenic (+130/‑42) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168374 | 29 (0.440) | noncoding (3/76 nt) | gltT | tRNA‑Glu | |||||