Tue Jan  8 08:27:59 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o GYD-NC_000913_3gb--BOP27/breseq/23-41_S23_L001 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/23-41_S23_L001_R1_001_150209.good.fq.gz /var/alemutpipe-outputs/good/23-41_S23_L001_R1_001_150513.good.fq.gz /var/alemutpipe-outputs/good/23-41_S23_L001_R2_001_150209.good.fq.gz /var/alemutpipe-outputs/good/23-41_S23_L001_R2_001_150513.good.fq.gz