Thu Jan  3 05:18:40 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o GYD-NC_000913_3gb--BOP27/breseq/GLY_28_034_S316_L001 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/28-END_S9_L001_R1_001_150407.good.fq.gz /var/alemutpipe-outputs/good/28-END_S9_L001_R1_001_150520.good.fq.gz /var/alemutpipe-outputs/good/28-END_S9_L001_R2_001_150407.good.fq.gz /var/alemutpipe-outputs/good/28-END_S9_L001_R2_001_150520.good.fq.gz /var/alemutpipe-outputs/good/GLY_28_034_S316_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/GLY_28_034_S316_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/GLY_28_034_S316_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/GLY_28_034_S316_L002_R2_001.good.fq.gz