mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 6,137 | A→G | 5.1% | L108S (TTG→TCG) | yaaA ← | peroxide resistance protein, lowers intracellular iron |
| RA | 9,907 | A→C | 12.2% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 12.5% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 13,583 | T→G | 5.3% | V474G (GTT→GGT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 13,586 | C→A | 5.0% | T475N (ACC→AAC) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 15,318 | G→A | 5.5% | intergenic (+20/‑127) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 15,319 | T→C | 5.5% | intergenic (+21/‑126) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 22,773 | A→T | 8.1% | E128V (GAA→GTA) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 22,776 | A→T | 7.5% | Y129F (TAC→TTC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 36,358 | C→A | 12.2% | A489A (GCG→GCT) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 53,376 | G→A | 6.6% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 5.9% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 83,587 | A→C | 10.0% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 9.6% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 87,881 | A→G | 6.8% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 7.4% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 7.3% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 111,013 | G→A | 7.7% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 7.4% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 120,154 | Δ1 bp | 7.6% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 7.9% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 167,918 | G→C | 7.7% | Q145H (CAG→CAC) | fhuA → | ferrichrome outer membrane transporter |
| RA | 169,748 | T→A | 6.3% | intergenic (+21/‑30) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 169,749 | T→A | 5.7% | intergenic (+22/‑29) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 242,344 | C→G | 7.4% | P320P (CCG→CCC) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 252,589 | G→C | 7.3% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 7.4% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 256,449 | T→C | 11.4% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 12.2% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 12.4% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 272,330:1 | +G | 5.7% | intergenic (+141/‑250) | insN → / → eyeA | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/novel sRNA, function unknown, CP4‑6 propahge |
| RA | 289,256 | G→C | 9.0% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 9.8% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 292,302 | C→G | 8.4% | intergenic (+71/+20) | yagJ → / ← yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 314,258 | G→A | 5.9% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 336,866 | G→C | 6.2% | G30A (GGC→GCC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 374,682 | C→T | 5.1% | P272L (CCG→CTG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,683 | G→C | 5.0% | P272P (CCG→CCC) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,688 | G→C | 5.1% | R274P (CGA→CCA) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,689 | A→G | 5.1% | R274R (CGA→CGG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 385,724 | T→A | 5.5% | W165R (TGG→AGG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 420,942 | G→T | 5.5% | intergenic (+32/‑44) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,945 | A→C | 5.9% | intergenic (+35/‑41) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,946 | T→A | 5.4% | intergenic (+36/‑40) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 475,971 | C→G | 10.3% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 10.2% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 481,225 | T→G | 9.9% | intergenic (‑517/+29) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 481,228 | C→A | 9.9% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 533,846 | T→C | 6.2% | intergenic (+20/‑70) | allR → / → gcl | glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase |
| RA | 533,849 | G→A | 6.0% | intergenic (+23/‑67) | allR → / → gcl | glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase |
| RA | 543,091 | G→C | 6.2% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 6.2% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,210 | A→T | 5.1% | intergenic (+177/+51) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 569,160 | G→T | 5.5% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 6.1% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 594,946 | C→A | 5.1% | Q166H (CAG→CAT) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 604,752 | G→T | 6.4% | intergenic (‑89/+19) | ybdG ← / ← nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 604,753 | A→C | 6.3% | intergenic (‑90/+18) | ybdG ← / ← nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 644,030 | A→G | 5.8% | intergenic (‑63/+167) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,034 | T→C | 5.8% | intergenic (‑67/+163) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,036 | A→T | 6.1% | intergenic (‑69/+161) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,038 | G→A | 6.1% | intergenic (‑71/+159) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,042 | C→T | 6.1% | intergenic (‑75/+155) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 657,531 | T→G | 5.8% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 5.7% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 5.8% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 659,204 | C→T | 5.5% | intergenic (+54/+47) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,205 | A→T | 5.7% | intergenic (+55/+46) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,206 | A→T | 5.7% | intergenic (+56/+45) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,207 | A→G | 5.7% | intergenic (+57/+44) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 691,390 | G→C | 6.1% | A132G (GCC→GGC) | ybeX ← | putative ion transport |
| RA | 710,170 | C→T | 7.4% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 8.0% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 725,276 | G→A | 6.8% | Y587Y (TAC→TAT) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 725,279 | T→C | 5.2% | K586K (AAA→AAG) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 774,356 | C→G | 7.5% | P16P (CCC→CCG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 774,358 | T→A | 7.2% | L17Q (CTG→CAG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 779,659 | C→A | 5.1% | P21H (CCC→CAC) ‡ | ybgF → | periplasmic TolA‑binding protein |
| RA | 779,660 | C→G | 5.1% | P21P (CCC→CCG) ‡ | ybgF → | periplasmic TolA‑binding protein |
| RA | 779,661 | T→G | 5.0% | W22G (TGG→GGG) | ybgF → | periplasmic TolA‑binding protein |
| RA | 781,668 | C→T | 5.4% | intergenic (+16/‑417) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,670 | A→T | 5.3% | intergenic (+18/‑415) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,672 | A→G | 5.3% | intergenic (+20/‑413) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 843,338 | C→G | 6.1% | A715P (GCG→CCG) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 843,342 | A→T | 5.8% | V713V (GTT→GTA) ‡ | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 843,343 | A→T | 5.9% | V713D (GTT→GAT) ‡ | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 843,347 | C→G | 6.5% | G712R (GGC→CGC) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 848,350 | C→T | 6.9% | intergenic (‑346/+58) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein |
| RA | 848,356 | T→A | 7.1% | intergenic (‑352/+52) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein |
| RA | 848,362 | A→G | 7.2% | intergenic (‑358/+46) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein |
| RA | 887,393 | T→A | 5.0% | intergenic (‑54/‑30) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 899,656 | T→C | 5.5% | intergenic (+11/+188) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 899,657 | G→A | 5.5% | intergenic (+12/+187) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 915,080 | G→C | 7.2% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 8.1% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 922,314:1 | +C | 7.2% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 958,769 | C→G | 5.0% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 5.0% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 5.6% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 964,148 | T→C | 6.9% | intergenic (+36/‑172) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,150 | T→A | 6.9% | intergenic (+38/‑170) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,152 | G→A | 7.5% | intergenic (+40/‑168) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 987,560 | G→C | 7.9% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 8.1% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,015,912 | T→A | 10.4% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 8.6% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 8.5% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,039,479 | G→A | 5.2% | V62I (GTC→ATC) ‡ | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,039,480 | T→C | 5.1% | V62A (GTC→GCC) ‡ | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,041,937 | T→G | 5.2% | intergenic (+22/+93) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,041,940 | C→A | 5.5% | intergenic (+25/+90) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,075,515 | G→T | 5.8% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 5.2% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,100,789 | G→T | 6.1% | intergenic (+2/+62) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,791 | G→C | 6.1% | intergenic (+4/+60) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,793 | A→C | 6.1% | intergenic (+6/+58) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,113,544 | G→A | 5.0% | intergenic (+138/‑35) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,546 | T→A | 5.0% | intergenic (+140/‑33) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,131,310 | A→T | 5.1% | N98I (AAT→ATT) | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,141,148 | C→T | 9.3% | intergenic (+162/+34) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,150 | G→A | 9.3% | intergenic (+164/+32) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,151 | T→C | 9.4% | intergenic (+165/+31) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,153 | A→G | 9.3% | intergenic (+167/+29) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,147,548 | T→G | 8.1% | intergenic (+8/‑73) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,549 | C→A | 8.1% | intergenic (+9/‑72) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,980 | G→T | 6.5% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 6.8% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 6.7% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 6.8% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,153,208 | T→C | 5.2% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 5.3% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 5.1% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 5.3% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,159,335 | G→T | 6.6% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 6.6% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,169,380 | T→C | 6.2% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 7.0% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 7.1% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,170,758 | T→C | 5.2% | Q1069Q (CAA→CAG) ‡ | mfd ← | transcription‑repair coupling factor |
| RA | 1,170,759 | T→A | 5.2% | Q1069L (CAA→CTA) ‡ | mfd ← | transcription‑repair coupling factor |
| RA | 1,170,762 | T→A | 5.1% | Q1068L (CAG→CTG) ‡ | mfd ← | transcription‑repair coupling factor |
| RA | 1,170,763 | G→A | 5.3% | Q1068* (CAG→TAG) ‡ | mfd ← | transcription‑repair coupling factor |
| RA | 1,174,077 | G→A | 8.7% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 8.7% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,211,610 | A→G | 7.8% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 8.0% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 7.9% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,232,481 | C→T | 9.0% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,232,484 | A→G | 6.8% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,253,830 | C→G | 7.1% | S708T (AGT→ACT) | ycgV ← | putative adhesin |
| RA | 1,285,190 | T→A | 5.3% | L18I (TTA→ATA) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| RA | 1,285,193 | T→A | 5.6% | W19R (TGG→AGG) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| JC JC | 1,293,015 | IS1 (–) +8 bp | 5.8% | intergenic (‑93/‑505) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,091 | IS5 (+) +4 bp | 12.4% | intergenic (‑169/‑433) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,311,830 | A→G | 10.4% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 10.5% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,324,837 | A→C | 7.3% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 7.3% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 8.1% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,330,396:1 | +T | 10.1% | intergenic (+15/+21) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,330,399 | A→T | 10.0% | intergenic (+18/+18) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,330,402 | Δ1 bp | 10.0% | intergenic (+21/+15) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,344,033 | A→G | 8.0% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 8.1% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 7.9% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,355,187 | A→G | 5.7% | V95A (GTG→GCG) ‡ | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,355,188 | C→T | 5.7% | V95M (GTG→ATG) ‡ | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,371,933 | T→A | 6.4% | L9I (TTA→ATA) | ycjN → | putative ABC sugar transporter periplasmic binding protein |
| RA | 1,371,936 | T→A | 6.3% | S10T (TCA→ACA) | ycjN → | putative ABC sugar transporter periplasmic binding protein |
| RA | 1,382,003 | A→G | 5.0% | A19A (GCA→GCG) | ompG → | outer membrane porin G |
| RA | 1,426,178 | A→T | 5.4% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,445,616 | G→C | 5.8% | A856P (GCA→CCA) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,449,050 | T→A | 12.0% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,504,888 | T→G | 5.1% | intergenic (+23/+17) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,893 | G→A | 5.1% | intergenic (+28/+12) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,524,458:1 | +T | 5.9% | intergenic (+90/+23) | yncE → / ← ansP | ATP‑binding protein, periplasmic, function unknown/L‑asparagine transporter |
| RA | 1,524,463 | Δ1 bp | 5.9% | intergenic (+95/+18) | yncE → / ← ansP | ATP‑binding protein, periplasmic, function unknown/L‑asparagine transporter |
| RA | 1,541,077 | G→C | 7.1% | A505G (GCC→GGC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,603,724 | A→C | 7.5% | T236P (ACC→CCC) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,603,735 | G→T | 7.3% | G239G (GGG→GGT) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,608,704 | A→G | 7.9% | S107P (TCG→CCG) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,608,707 | C→T | 8.1% | D106N (GAT→AAT) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,625,976 | A→C | 27.0% | F469V (TTC→GTC) | dcp ← | dipeptidyl carboxypeptidase II |
| RA | 1,648,450 | C→T | 5.4% | intergenic (+109/‑58) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,648,451 | A→G | 5.4% | intergenic (+110/‑57) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,650,147 | G→A | 5.6% | pseudogene (70/765 nt) | ydfE → | Qin prophage; pseudogene;Phage or Prophage Related |
| RA | 1,650,148 | T→C | 5.5% | pseudogene (71/765 nt) | ydfE → | Qin prophage; pseudogene;Phage or Prophage Related |
| RA | 1,657,895 | A→T | 6.1% | intergenic (+25/‑174) | ynfD → / → ynfE | DUF1161 family periplasmic protein/putative selenate reductase, periplasmic |
| RA | 1,657,898 | A→T | 6.2% | intergenic (+28/‑171) | ynfD → / → ynfE | DUF1161 family periplasmic protein/putative selenate reductase, periplasmic |
| RA | 1,657,901 | A→T | 6.2% | intergenic (+31/‑168) | ynfD → / → ynfE | DUF1161 family periplasmic protein/putative selenate reductase, periplasmic |
| RA | 1,660,438 | A→G | 5.3% | S790S (TCA→TCG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,442 | C→G | 5.1% | L792V (CTG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,446 | C→T | 5.7% | A793V (GCG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,689,817 | C→A | 9.0% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 9.0% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 8.8% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,693,416 | A→G | 5.1% | L283P (CTG→CCG) ‡ | uidB ← | glucuronide transporter |
| RA | 1,693,417 | G→C | 5.3% | L283V (CTG→GTG) ‡ | uidB ← | glucuronide transporter |
| RA | 1,693,418 | C→T | 5.2% | P282P (CCG→CCA) | uidB ← | glucuronide transporter |
| RA | 1,797,388 | G→T | 5.9% | P186Q (CCG→CAG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,797,391 | A→C | 5.9% | L185R (CTG→CGG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,799,370 | Δ1 bp | 9.3% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 9.7% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,808,680 | T→A | 5.3% | intergenic (+24/+17) | yniA → / ← yniB | fructosamine kinase family protein/putative inner membrane protein |
| RA | 1,808,682 | C→G | 5.6% | intergenic (+26/+15) | yniA → / ← yniB | fructosamine kinase family protein/putative inner membrane protein |
| RA | 1,808,684 | T→A | 5.6% | intergenic (+28/+13) | yniA → / ← yniB | fructosamine kinase family protein/putative inner membrane protein |
| RA | 1,836,906 | C→T | 5.7% | S278S (AGC→AGT) | ynjB → | putative ABC transporter periplasmic binding protein |
| RA | 1,850,715 | Δ1 bp | 5.8% | intergenic (+22/‑145) | sppA → / → ansA | protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1 |
| RA | 1,850,719:1 | +T | 5.9% | intergenic (+26/‑141) | sppA → / → ansA | protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1 |
| RA | 1,851,204 | A→C | 5.7% | T115T (ACA→ACC) | ansA → | cytoplasmic L‑asparaginase 1 |
| RA | 1,865,682 | G→C | 11.2% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,868,859 | Δ1 bp | 5.8% | intergenic (+17/‑96) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,868,865:1 | +G | 5.6% | intergenic (+23/‑90) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,891,842 | C→T | 5.1% | G465D (GGT→GAT) | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,910,295 | A→T | 6.1% | D7V (GAC→GTC) | yebQ → | putative transporter |
| RA | 1,932,094 | C→G | 8.1% | intergenic (+35/+21) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,932,095 | T→A | 8.2% | intergenic (+36/+20) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,932,096 | C→G | 8.1% | intergenic (+37/+19) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 10.5% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 2,020,838 | T→C | 13.5% | V251A (GTG→GCG) | fliM → | flagellar motor switching and energizing component |
| RA | 2,020,841 | G→A | 14.6% | R252H (CGC→CAC) | fliM → | flagellar motor switching and energizing component |
| RA | 2,028,158 | G→C | 8.3% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 8.2% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 8.4% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,032,336 | G→C | 10.0% | intergenic (‑19/+48) | dcm ← / ← yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| RA | 2,044,729 | T→A | 6.3% | intergenic (+105/‑209) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,062,354 | T→A | 10.0% | intergenic (+19/+37) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,355 | T→G | 10.1% | intergenic (+20/+36) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,356 | C→A | 10.0% | intergenic (+21/+35) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,357 | T→A | 10.1% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,074,691 | C→G | 7.6% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,079,004 | G→C | 8.7% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,081,688 | A→T | 6.7% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,093,965 | C→G | 5.2% | D166E (GAC→GAG) | hisB → | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,255,991 | A→T | 6.2% | K213* (AAA→TAA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,255,992 | A→T | 6.3% | K213I (AAA→ATA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,270,602 | T→C | 7.1% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 7.2% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,286,311 | C→G | 7.2% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 7.4% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 7.7% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,305,085 | A→G | 11.3% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 11.5% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 11.5% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,314,800 | A→C | 7.4% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 7.3% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,356,734 | G→C | 7.0% | intergenic (+23/‑170) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,737 | T→C | 7.1% | intergenic (+26/‑167) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,738 | G→A | 6.9% | intergenic (+27/‑166) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,741 | G→C | 7.0% | intergenic (+30/‑163) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,364,995 | T→G | 10.0% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 9.3% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,391,414 | C→G | 5.0% | R31P (CGA→CCA) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,391,417 | C→G | 5.1% | W30S (TGG→TCG) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,428,699 | A→T | 5.0% | intergenic (‑73/+22) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,432,995 | C→T | 6.2% | intergenic (‑53/+17) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,462,677 | A→T | 6.9% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 6.7% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 6.7% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,482,839 | C→G | 7.0% | L167F (TTG→TTC) | emrK ← | multidrug resistance efflux pump membrane fusion protein |
| RA | 2,497,023 | A→T | 5.0% | intergenic (+31/+34) | ypdK → / ← alaC | inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,497,024 | T→G | 5.1% | intergenic (+32/+33) | ypdK → / ← alaC | inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,497,026 | A→T | 5.1% | intergenic (+34/+31) | ypdK → / ← alaC | inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,518,082 | C→G | 6.7% | noncoding (35/76 nt) | alaX ← | tRNA‑Ala |
| RA | 2,561,205 | A→T | 8.0% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,206 | A→T | 8.0% | intergenic (+308/‑162) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,566,490 | C→T | 5.8% | G132D (GGT→GAT) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,566,493 | G→C | 5.8% | A131G (GCC→GGC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,566,496 | A→G | 5.5% | I130T (ATC→ACC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,581,762 | G→A | 8.5% | A339V (GCC→GTC) | ypfG ← | DUF1176 family protein |
| RA | 2,581,765 | T→C | 8.2% | D338G (GAC→GGC) | ypfG ← | DUF1176 family protein |
| RA | 2,589,122 | G→A | 5.7% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,589,125 | T→C | 5.8% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,596,873 | Δ1 bp | 7.8% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 8.0% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,616,606 | G→C | 5.2% | A171A (GCG→GCC) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,616,609 | G→C | 5.7% | M172I (ATG→ATC) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,632,584 | A→T | 5.8% | intergenic (‑49/+20) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,632,586 | G→C | 5.9% | intergenic (‑51/+18) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,632,588 | A→T | 5.9% | intergenic (‑53/+16) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,637,433 | C→T | 8.5% | intergenic (‑77/+41) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,438 | T→G | 6.7% | intergenic (‑82/+36) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,439 | C→A | 6.9% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,444 | A→G | 6.9% | intergenic (‑88/+30) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,653,367 | G→A | 7.9% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 7.6% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,656,386 | C→T | 5.4% | intergenic (‑28/+150) | pepB ← / ← iscX | aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase |
| RA | 2,656,391 | G→A | 5.3% | intergenic (‑33/+145) | pepB ← / ← iscX | aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase |
| RA | 2,656,392 | T→C | 5.3% | intergenic (‑34/+144) | pepB ← / ← iscX | aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase |
| RA | 2,656,397 | A→G | 5.6% | intergenic (‑39/+139) | pepB ← / ← iscX | aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase |
| RA | 2,666,972 | C→T | 6.2% | W292* (TGG→TAG) | hcaT ← | putative 3‑phenylpropionic transporter |
| RA | 2,666,978 | A→G | 5.3% | L290S (TTG→TCG) ‡ | hcaT ← | putative 3‑phenylpropionic transporter |
| RA | 2,666,979 | A→T | 5.4% | L290M (TTG→ATG) ‡ | hcaT ← | putative 3‑phenylpropionic transporter |
| RA | 2,666,980 | C→T | 5.1% | A289A (GCG→GCA) | hcaT ← | putative 3‑phenylpropionic transporter |
| RA | 2,666,986 | A→G | 5.2% | T287T (ACT→ACC) | hcaT ← | putative 3‑phenylpropionic transporter |
| RA | 2,700,862 | G→A | 6.4% | P46L (CCG→CTG) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,863 | G→C | 6.5% | P46A (CCG→GCG) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,865 | T→A | 6.8% | Q45L (CAG→CTG) | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,867 | G→C | 6.9% | H44Q (CAC→CAG) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,700,868 | T→C | 6.9% | H44R (CAC→CGC) ‡ | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,704,304 | A→G | 9.1% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 9.0% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 9.1% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,707,320 | A→T | 5.5% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 5.5% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,715,258 | A→G | 5.5% | A21A (GCT→GCC) ‡ | yfiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,715,259 | G→C | 5.9% | A21G (GCT→GGT) ‡ | yfiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,715,260 | C→T | 5.7% | A21T (GCT→ACT) ‡ | yfiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,716,030 | T→G | 7.4% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 6.6% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,725,630 | Δ1 bp | 86.4% | coding (117/1299 nt) | kgtP ← | alpha‑ketoglutarate transporter |
| RA | 2,731,073 | A→T | 11.6% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 11.3% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,762,221 | G→T | 5.9% | I440I (ATC→ATA) ‡ | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,762,222 | A→C | 6.1% | I440S (ATC→AGC) ‡ | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,775,085 | T→C | 5.9% | intergenic (+64/‑460) | yfjW → / → ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| RA | 2,775,089 | T→A | 5.9% | intergenic (+68/‑456) | yfjW → / → ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| RA | 2,775,093 | G→A | 6.5% | intergenic (+72/‑452) | yfjW → / → ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| RA | 2,778,123 | G→T | 6.3% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 6.3% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,801,056 | A→T | 7.6% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,814,174 | T→A | 6.1% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 6.2% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,822,673 | C→T | 7.3% | intergenic (‑34/+35) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,678 | G→T | 7.4% | intergenic (‑39/+30) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,679 | A→C | 7.5% | intergenic (‑40/+29) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,684 | A→G | 7.3% | intergenic (‑45/+24) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,838,222 | A→T | 7.9% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,838,231 | A→T | 8.2% | intergenic (‑126/+23) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,842,437 | G→T | 5.3% | intergenic (+23/+136) | ascB → / ← hycI | cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE |
| RA | 2,842,438 | A→C | 5.3% | intergenic (+24/+135) | ascB → / ← hycI | cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE |
| RA | 2,866,487 | G→C | 5.5% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 5.5% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,873,915 | A→G | 7.9% | H26H (CAT→CAC) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,917 | G→C | 8.4% | H26D (CAT→GAT) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,919 | C→T | 7.9% | G25D (GGT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,906,608 | G→C | 5.7% | intergenic (+25/+35) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,918,017 | C→T | 7.3% | intergenic (+204/+28) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,019 | G→T | 7.1% | intergenic (+206/+26) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,020 | A→C | 7.6% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,022 | A→G | 8.4% | intergenic (+209/+23) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,971,146 | T→C | 8.4% | intergenic (+13/‑125) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,151 | T→C | 8.0% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 8.0% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,159 | G→A | 8.6% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,972,652 | A→T | 6.9% | intergenic (+15/+17) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,972,653 | A→T | 7.0% | intergenic (+16/+16) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 3,007,466 | T→C | 6.8% | intergenic (+14/‑44) | ygeW → / → ygeX | putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,007,473 | G→A | 6.8% | intergenic (+21/‑37) | ygeW → / → ygeX | putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,020,510 | G→T | 9.2% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 9.3% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 9.4% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,033,627 | T→A | 5.1% | intergenic (+14/+30) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,628 | T→A | 5.1% | intergenic (+15/+29) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,061,817 | G→C | 10.1% | W323S (TGG→TCG) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,818 | G→C | 10.2% | W323C (TGG→TGC) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,090,842 | G→C | 6.2% | A166P (GCG→CCG) | endA → | DNA‑specific endonuclease I |
| RA | 3,092,774:1 | +A | 5.1% | coding (897/951 nt) | gshB → | glutathione synthetase |
| RA | 3,131,524 | A→G | 6.4% | S295S (AGT→AGC) ‡ | yghQ ← | putative inner membrane polysaccharide flippase |
| RA | 3,131,525 | C→T | 5.7% | S295N (AGT→AAT) ‡ | yghQ ← | putative inner membrane polysaccharide flippase |
| RA | 3,135,356 | T→C | 5.5% | Q339R (CAG→CGG) ‡ | pitB ← | phosphate transporter |
| RA | 3,135,357 | G→A | 5.5% | Q339* (CAG→TAG) ‡ | pitB ← | phosphate transporter |
| RA | 3,156,590 | C→A | 10.8% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 10.8% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,160,640 | G→C | 7.6% | T169T (ACC→ACG) | ygiQ ← | Radical SAM superfamily protein |
| RA | 3,160,645 | G→C | 7.7% | R168G (CGT→GGT) | ygiQ ← | Radical SAM superfamily protein |
| RA | 3,171,852 | C→T | 6.1% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 6.9% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 6.1% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 6.0% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,180,497 | Δ1 bp | 6.8% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 9.4% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 10.2% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,183,345:1 | +T | 10.0% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 9.6% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,197,226 | C→G | 6.0% | V806L (GTG→CTG) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| RA | 3,231,459 | G→A | 5.0% | intergenic (+220/‑206) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,231,460 | C→A | 5.0% | intergenic (+221/‑205) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,231,466 | G→C | 6.1% | intergenic (+227/‑199) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,231,467 | G→C | 5.0% | intergenic (+228/‑198) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,238,702 | T→C | 5.1% | A41A (GCT→GCC) | alx → | putative membrane‑bound redox modulator |
| RA | 3,238,705 | G→A | 5.1% | A42A (GCG→GCA) | alx → | putative membrane‑bound redox modulator |
| RA | 3,239,609 | T→G | 7.2% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 6.3% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 6.3% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,250,989 | G→C | 6.5% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,990 | A→T | 6.5% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,991 | A→T | 6.2% | intergenic (+37/‑33) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,992 | G→C | 6.2% | intergenic (+38/‑32) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,256,441 | T→G | 6.7% | T71P (ACG→CCG) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,442 | G→C | 6.8% | G70G (GGC→GGG) ‡ | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,443 | C→A | 6.5% | G70V (GGC→GTC) ‡ | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,450 | C→T | 5.9% | V68I (GTT→ATT) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,258,251 | T→A | 5.4% | intergenic (‑241/+34) | yhaO ← / ← tdcG | putative transporter/L‑serine dehydratase 3, anaerobic |
| RA | 3,258,252 | T→A | 5.3% | intergenic (‑242/+33) | yhaO ← / ← tdcG | putative transporter/L‑serine dehydratase 3, anaerobic |
| RA | 3,322,698 | A→G | 6.3% | intergenic (‑193/+35) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,700 | A→G | 5.4% | intergenic (‑195/+33) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,703 | C→T | 5.3% | intergenic (‑198/+30) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,705 | C→T | 5.3% | intergenic (‑200/+28) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,324,952 | A→G | 6.8% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 6.7% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 6.7% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 6.4% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,328,182 | A→T | 9.6% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 9.2% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 8.7% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,332,822 | G→A | 6.4% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 6.1% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,368,982 | G→C | 8.5% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,407,293 | T→A | 9.8% | intergenic (+27/‑82) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,294 | T→A | 10.0% | intergenic (+28/‑81) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,295 | T→A | 10.0% | intergenic (+29/‑80) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,418,628 | G→A | 8.5% | intergenic (+17/‑414) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,418,629 | T→C | 8.6% | intergenic (+18/‑413) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,423,229 | T→G | 9.2% | intergenic (+35/+194) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,230 | T→A | 9.3% | intergenic (+36/+193) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,231 | T→A | 10.0% | intergenic (+37/+192) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,232 | C→A | 9.1% | intergenic (+38/+191) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,439,588 | G→C | 6.5% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 6.9% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,458,556 | C→A | 61.9% | S73* (TCG→TAG) | gspE → | general secretory pathway component, cryptic |
| RA | 3,511,549 | G→C | 5.2% | R266G (CGA→GGA) | yhfZ ← | putative DNA‑binding transcriptional regulator |
| RA | 3,522,778 | C→G | 5.8% | intergenic (‑27/‑93) | hofM ← / → mrcA | DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,522,779 | T→A | 6.0% | intergenic (‑28/‑92) | hofM ← / → mrcA | DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,522,780 | C→G | 5.9% | intergenic (‑29/‑91) | hofM ← / → mrcA | DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,539,805 | G→A | 5.4% | intergenic (+99/‑358) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,539,815 | A→T | 6.8% | intergenic (+109/‑348) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,539,816 | T→A | 6.9% | intergenic (+110/‑347) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,539,817 | A→T | 6.9% | intergenic (+111/‑346) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,587,224 | A→T | 5.8% | Q94H (CAA→CAT) | yhhA → | DUF2756 family protein |
| RA | 3,587,225 | A→T | 5.8% | M95L (ATG→TTG) | yhhA → | DUF2756 family protein |
| RA | 3,601,824 | G→C | 5.1% | P88R (CCC→CGC) | ftsX ← | putative ABC transporter permease |
| RA | 3,642,358 | T→A | 9.6% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 9.7% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,697,969 | C→G | 5.8% | H504Q (CAC→CAG) | bcsE → | cellulose production protein |
| RA | 3,708,595 | G→A | 8.6% | intergenic (‑890/+21) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,596 | T→A | 8.5% | intergenic (‑891/+20) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,597 | T→C | 8.4% | intergenic (‑892/+19) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,714,163:1 | +T | 5.3% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 5.2% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,720,793 | G→T | 6.7% | Q38H (CAG→CAT) | insJ → | IS150 transposase A |
| RA | 3,720,797 | A→C | 6.1% | R40R (AGG→CGG) ‡ | insJ → | IS150 transposase A |
| RA | 3,720,798 | G→T | 6.0% | R40M (AGG→ATG) ‡ | insJ → | IS150 transposase A |
| RA | 3,720,802 | A→C | 6.0% | T41T (ACA→ACC) | insJ → | IS150 transposase A |
| RA | 3,774,207 | C→T | 8.9% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 9.1% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 9.3% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 8.5% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 9.5% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 8.2% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 8.2% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,888,212 | Δ1 bp | 5.3% | intergenic (+20/‑223) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,888,219 | T→A | 6.1% | intergenic (+27/‑216) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,888,224:1 | +A | 5.1% | intergenic (+32/‑211) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,897,613 | G→A | 5.9% | P36P (CCG→CCA) | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,614 | C→G | 5.4% | L37V (CTG→GTG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,615 | T→C | 6.0% | L37P (CTG→CCG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,900,542 | A→T | 7.4% | I12I (ATT→ATA) | yieL ← | putative xylanase |
| RA | 3,900,545 | A→T | 7.3% | A11A (GCT→GCA) | yieL ← | putative xylanase |
| RA | 3,918,291 | C→T | 5.6% | intergenic (‑26/+25) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,296 | C→T | 5.0% | intergenic (‑31/+20) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,916 | T→A | 5.5% | K314N (AAA→AAT) | atpA ← | F1 sector of membrane‑bound ATP synthase, alpha subunit |
| JC JC | 3,922,629 | IS5 (–) +4 bp | 15.7% | intergenic (‑189/+425) | atpI ← / ← rsmG | ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
| RA | 3,959,480 | A→T | 6.2% | intergenic (+35/+52) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,481 | C→G | 6.1% | intergenic (+36/+51) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,963,293:1 | +C | 5.8% | coding (937/1485 nt) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,963,299 | Δ1 bp | 5.6% | coding (931/1485 nt) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 4,015,333 | A→T | 6.4% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,017,216:1 | +A | 5.7% | intergenic (+24/‑117) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,017,222 | Δ1 bp | 5.6% | intergenic (+30/‑111) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,041,216 | T→C | 6.5% | Q73R (CAG→CGG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,217 | G→A | 6.3% | Q73* (CAG→TAG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,220 | T→C | 6.5% | S72G (AGC→GGC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,221 | G→A | 6.4% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,049,986 | G→T | 7.4% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 7.0% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,056,038 | T→G | 5.5% | D101A (GAC→GCC) ‡ | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,056,039 | C→A | 5.4% | D101Y (GAC→TAC) ‡ | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,060,261 | G→T | 5.9% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 6.0% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,070,469 | A→C | 5.6% | intergenic (‑68/+46) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,127,251 | C→T | 7.1% | intergenic (+26/+35) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,127,252 | A→G | 7.8% | intergenic (+27/+34) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,130,005 | G→A | 7.0% | L57L (TTG→TTA) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,130,008 | T→C | 5.5% | I58I (ATT→ATC) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,223,854 | T→C | 5.9% | R9R (CGT→CGC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,223,855 | G→A | 6.0% | A10T (GCG→ACG) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,291,512 | G→A | 8.3% | M1M (GTG→ATG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,291,513 | T→C | 8.3% | M1A (GTG→GCG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,296,060 | C→T | 21.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,307,294 | A→T | 7.5% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 7.1% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,312,083 | G→C | 5.2% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,335,654 | T→A | 8.6% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 8.6% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,356,445 | A→T | 5.1% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 5.1% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 8.3% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 8.9% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,366,854 | T→G | 5.6% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 5.6% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,386,126 | C→T | 5.2% | R1082H (CGT→CAT) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,386,129 | A→G | 5.2% | M1081T (ATG→ACG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,388,496 | T→A | 6.1% | Q292L (CAG→CTG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,392,617 | C→G | 5.1% | noncoding (35/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,426,592 | T→A | 10.5% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,447,964 | T→A | 5.9% | L24* (TTA→TAA) | ytfP → | GGCT‑like protein |
| RA | 4,470,951 | A→C | 5.9% | intergenic (‑38/+35) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,952 | T→C | 6.0% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,957 | G→A | 5.8% | intergenic (‑44/+29) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,958 | G→T | 5.8% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,472,434 | G→A | 5.9% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 6.1% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,479,012 | A→T | 9.8% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 9.7% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 9.7% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,512,350:1 | +G | 6.3% | coding (65/957 nt) | fecD ← | ferric citrate ABC transporter permease |
| RA | 4,520,500 | Δ1 bp | 12.0% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 11.3% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,532,534 | G→C | 5.9% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 5.9% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,537,639 | T→G | 7.1% | intergenic (‑45/+20) | nanS ← / ← nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase |
| RA | 4,537,640 | T→G | 7.2% | intergenic (‑46/+19) | nanS ← / ← nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase |
| RA | 4,537,643 | C→A | 7.1% | intergenic (‑49/+16) | nanS ← / ← nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase |
| RA | 4,537,644 | C→A | 6.7% | intergenic (‑50/+15) | nanS ← / ← nanM | 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase |
| RA | 4,551,422 | T→A | 5.7% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,592,199 | C→T | 5.2% | A181A (GCC→GCT) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,592,201 | T→A | 5.5% | V182D (GTC→GAC) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,592,203 | A→G | 5.5% | S183G (AGC→GGC) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,604,753 | T→A | 5.4% | S198R (AGT→AGA) | bglJ → | bgl operon transcriptional activator |
| RA | 4,604,754 | T→A | 5.4% | S199T (TCT→ACT) | bglJ → | bgl operon transcriptional activator |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423745–3424234 | 3424550–3424238 | 5–806 | 56 [54] | [55] 58 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 224891 = | NA (NA) | 4 (0.030) | 3/252 | NT | NA | noncoding (1121/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224923 = | NA (NA) | noncoding (1153/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274038 = | NA (NA) | 4 (0.030) | 4/248 | NT | NA | noncoding (1112/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274083 = | NA (NA) | noncoding (1067/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 3 (0.030) | 3/242 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 474269 = | NA (NA) | 4 (0.030) | 4/248 | NT | NA | intergenic (+17/+32) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 |
| ? | NC_000913 | 474296 = | NA (NA) | intergenic (+44/+5) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 | |||||
| * | ? | NC_000913 | = 858662 | 105 (0.870) | 6 (0.050) | 5/244 | NT | 5.9% | coding (400/1266 nt) | ybiU | DUF1479 family protein |
| ? | NC_000913 | = 858674 | 93 (0.830) | coding (388/1266 nt) | ybiU | DUF1479 family protein | |||||
| * | ? | NC_000913 | 1207790 = | 50 (0.420) | 62 (0.590) | 47/228 | NT | 55.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 57 (0.540) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 50 (0.420) | 53 (0.500) | 45/228 | NT | 51.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 57 (0.540) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 129 (1.110) | 90/252 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1392552 | 45 (0.370) | 84 (0.700) | 64/260 | NT | 65.1% | coding (562/900 nt) | pgrR | murein peptide degradation regulator |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1754899 = | 103 (0.860) | 5 (0.040) | 5/242 | NT | 5.2% | intergenic (‑422/+33) | ydhY/ydhZ | putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein |
| ? | NC_000913 | 1754928 = | 88 (0.790) | intergenic (‑451/+4) | ydhY/ydhZ | putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein | |||||
| * | ? | NC_000913 | 2604981 = | 123 (1.020) | 6 (0.050) | 7/242 | NT | 5.0% | coding (171/1440 nt) | hyfD | hydrogenase 4, membrane subunit |
| ? | NC_000913 | 2605003 = | 112 (1.000) | coding (193/1440 nt) | hyfD | hydrogenase 4, membrane subunit | |||||
| * | ? | NC_000913 | 2700550 = | 112 (0.930) | 5 (0.050) | 5/222 | NT | 5.9% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | 2700601 = | 65 (0.630) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | 3091089 = | 79 (0.660) | 5 (0.040) | 5/242 | NT | 6.0% | intergenic (+35/‑45) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3091113 = | 82 (0.730) | intergenic (+59/‑21) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 3091097 | 87 (0.720) | 9 (0.080) | 7/242 | NT | 9.9% | intergenic (+43/‑37) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3091103 | 82 (0.730) | intergenic (+49/‑31) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 3423376 = | 110 (0.920) | 17 (0.140) | 9/256 | NT | 13.3% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213162 | 113 (0.960) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 3721045 = | 145 (1.210) | 329 (2.760) | 148/258 | NT | 70.5% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 132 (1.110) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 3948426 = | 144 (1.200) | 9 (0.080) | 8/242 | NT | 6.4% | intergenic (+2/+23) | yifE/yifB | UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator |
| ? | NC_000913 | 3948449 = | 131 (1.170) | coding (1521/1521 nt) | yifB | magnesium chelatase family protein and putative transcriptional regulator | |||||
| * | ? | NC_000913 | = 4168341 | 63 (0.520) | 7 (0.060) | 6/240 | NT | 11.4% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 51 (0.460) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 4614608 = | 77 (0.640) | 8 (0.070) | 7/246 | NT | 9.9% | noncoding (352/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | 4614641 = | 72 (0.630) | noncoding (385/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||