mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 5.8% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 5.9% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 16,923 | T→G | 5.4% | K13T (AAG→ACG) | mokC ← | regulatory protein for HokC, overlaps CDS of hokC |
| RA | 16,926 | C→A | 5.6% | R12L (CGT→CTT) | mokC ← | regulatory protein for HokC, overlaps CDS of hokC |
| RA | 53,376 | G→A | 6.9% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 6.8% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 87,881 | A→G | 6.5% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 5.9% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 5.8% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 151,519 | A→C | 5.1% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 5.1% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 164,557 | G→C | 5.6% | intergenic (+23/‑173) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,620 | C→T | 10.4% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 10.4% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 237,540 | C→A | 5.4% | A69E (GCG→GAG) | yafT → | lipoprotein |
| RA | 256,449 | T→C | 6.7% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 6.9% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 6.9% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 289,255 | T→A | 6.8% | intergenic (‑93/+46) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,256 | G→C | 5.9% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 5.8% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 314,255 | T→C | 7.2% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 6.8% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 346,022 | G→A | 7.0% | R106C (CGC→TGC) | yahN ← | amino acid exporter for proline, lysine, glutamate, homoserine |
| RA | 385,724 | T→A | 7.2% | W165R (TGG→AGG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 443,022 | G→A | 9.1% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 9.0% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 524,394 | A→C | 7.7% | A378A (GCA→GCC) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 681,694 | A→G | 8.0% | intergenic (+31/+29) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,699 | T→A | 7.7% | intergenic (+36/+24) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,700 | T→A | 6.5% | intergenic (+37/+23) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 699,556 | C→T | 5.4% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,559 | A→G | 5.4% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 756,643 | T→A | 7.4% | I246N (ATT→AAT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 762,013 | T→G | 5.7% | A164A (GCT→GCG) | sucB → | dihydrolipoyltranssuccinase |
| RA | 762,862 | A→G | 5.5% | intergenic (+123/‑152) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 762,863 | A→C | 5.5% | intergenic (+124/‑151) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 762,869 | A→T | 5.3% | intergenic (+130/‑145) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 762,870 | A→T | 5.2% | intergenic (+131/‑144) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 770,679 | G→T | 6.3% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 6.3% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 781,326 | A→T | 5.1% | intergenic (+104/‑43) | lysY → / → lysZ | tRNA‑Lys/tRNA‑Lys |
| RA | 784,012 | T→A | 6.0% | Q271L (CAG→CTG) | zitB ← | zinc efflux system |
| RA | 850,993 | T→C | 5.6% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 5.9% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 5.4% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 5.4% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 871,513 | G→A | 5.1% | A183T (GCA→ACA) | gsiC → | glutathione ABC transporter permease |
| RA | 887,392 | T→A | 5.2% | intergenic (‑53/‑31) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 897,968:1 | +A | 5.1% | intergenic (+39/‑21) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 935,676 | C→T | 6.5% | T818I (ACC→ATC) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 940,751 | T→C | 5.5% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 5.4% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 968,406 | G→A | 6.8% | R14Q (CGG→CAG) | lpxK → | lipid A 4'kinase |
| RA | 968,409 | T→A | 6.5% | L15Q (CTA→CAA) | lpxK → | lipid A 4'kinase |
| RA | 987,560 | G→C | 15.2% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 15.3% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 998,448 | T→A | 7.9% | intergenic (+41/‑42) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 998,450 | T→C | 7.5% | intergenic (+43/‑40) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 998,451 | T→A | 6.8% | intergenic (+44/‑39) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 1,004,741 | T→G | 5.4% | intergenic (+84/‑27) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,004,746 | C→A | 6.9% | intergenic (+89/‑22) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,043,495 | G→T | 5.8% | P239H (CCC→CAC) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,043,503 | A→C | 5.0% | G236G (GGT→GGG) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,075,515 | G→T | 6.9% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 6.3% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,147,548 | T→G | 6.1% | intergenic (+8/‑73) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,549 | C→A | 6.1% | intergenic (+9/‑72) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,980 | G→T | 6.6% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 6.4% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 6.1% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 6.4% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,159,336 | A→C | 7.1% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,174,077 | G→A | 5.2% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| JC JC | 1,293,032 | IS1 (–) +9 bp | 92.0% | intergenic (‑110/‑487) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,304,469 | C→G | 5.4% | R212R (CGC→CGG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,304,479 | C→G | 5.6% | P216A (CCG→GCG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,306,788 | T→C | 6.1% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,324,837 | A→C | 7.0% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 7.6% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 7.8% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,355,187 | A→G | 7.2% | V95A (GTG→GCG) ‡ | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,355,188 | C→T | 6.5% | V95M (GTG→ATG) ‡ | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,426,178 | A→T | 10.9% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,449,050 | T→A | 8.5% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,462,028 | G→A | 12.2% | G379D (GGT→GAT) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,462,029 | T→C | 11.2% | G379G (GGT→GGC) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,482,222 | A→T | 5.5% | intergenic (+21/+33) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,224 | T→G | 5.5% | intergenic (+23/+31) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,227 | C→A | 5.8% | intergenic (+26/+28) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,229 | A→T | 5.5% | intergenic (+28/+26) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,517,481 | C→G | 5.0% | R31R (CGC→CGG) | ydcX → | DUF2566 family protein |
| RA | 1,517,484 | C→G | 5.0% | I32M (ATC→ATG) | ydcX → | DUF2566 family protein |
| RA | 1,603,724 | A→C | 5.6% | T236P (ACC→CCC) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,603,735 | G→T | 5.3% | G239G (GGG→GGT) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,620,224 | C→G | 5.4% | intergenic (+17/+14) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,620,227 | C→G | 5.6% | intergenic (+20/+11) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,642,370 | C→G | 7.9% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 7.9% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,703,251 | A→T | 9.3% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 7.1% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,764,687 | T→C | 5.7% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 5.6% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 5.7% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 5.6% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 5.7% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,829,322 | A→C | 8.8% | L138R (CTG→CGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,328 | C→G | 8.8% | G136A (GGC→GCC) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,334 | G→T | 9.1% | P134Q (CCG→CAG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,865,682 | G→C | 9.4% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,880,851 | T→A | 5.3% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 5.8% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,904,592 | C→A | 5.1% | T233N (ACT→AAT) | manZ → | mannose‑specific enzyme IID component of PTS |
| RA | 1,928,799 | A→C | 5.9% | L14R (CTT→CGT) | ptrB ← | protease II |
| RA | 1,928,802 | G→T | 6.1% | T13K (ACG→AAG) | ptrB ← | protease II |
| RA | 1,941,461 | T→A | 5.1% | I59F (ATT→TTT) | mepM ← | murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,979,525 | T→C | 6.2% | intergenic (‑310/‑228) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,028,158 | G→C | 5.9% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 5.9% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 5.9% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,041,159 | G→A | 8.5% | intergenic (+41/‑216) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,160 | T→G | 8.5% | intergenic (+42/‑215) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,166 | G→T | 8.5% | intergenic (+48/‑209) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,167 | A→C | 8.6% | intergenic (+49/‑208) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,173 | C→A | 10.7% | intergenic (+55/‑202) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,174 | T→C | 10.0% | intergenic (+56/‑201) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,059,950 | T→A | 5.4% | intergenic (+24/+14) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,085,675 | C→T | 5.6% | intergenic (‑150/+29) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,090,122 | A→G | 10.1% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 8.9% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 8.7% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,115,847 | G→T | 7.6% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 8.5% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 8.8% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,123,626 | A→C | 5.0% | C299G (TGC→GGC) | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,633 | G→T | 5.2% | G296G (GGC→GGA) ‡ | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,634 | C→G | 5.7% | G296A (GGC→GCC) ‡ | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,637 | T→A | 5.2% | E295V (GAG→GTG) | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,137,778 | A→G | 10.0% | intergenic (‑535/‑124) | wza ← / → yegH | colanic acid export protein; outer membrane auxillary lipoprotein/inner membrane protein |
| RA | 2,140,400 | G→A | 5.4% | R405W (CGG→TGG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,140,401 | T→C | 5.5% | P404P (CCA→CCG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,474,878 | T→C | 5.2% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 6.2% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,521,500 | C→T | 9.2% | intergenic (+172/+93) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,502 | A→T | 8.8% | intergenic (+174/+91) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,504 | A→G | 8.9% | intergenic (+176/+89) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,532,268 | T→C | 10.8% | intergenic (+44/‑141) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,272 | T→A | 12.1% | intergenic (+48/‑137) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,275 | T→A | 9.5% | intergenic (+51/‑134) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,279 | G→A | 11.1% | intergenic (+55/‑130) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,590,767 | T→C | 5.3% | intergenic (+59/+40) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,771 | C→G | 5.3% | intergenic (+63/+36) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,775 | G→A | 6.0% | intergenic (+67/+32) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,637,433 | C→T | 8.2% | intergenic (‑77/+41) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,438 | T→G | 8.2% | intergenic (‑82/+36) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,439 | C→A | 8.0% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,444 | A→G | 8.8% | intergenic (‑88/+30) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,653,367 | G→A | 21.3% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 20.6% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,691,169 | A→T | 8.6% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 8.1% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 8.2% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,716,030 | T→G | 10.2% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 10.8% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,724,097 | T→A | 6.2% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,761,620 | T→G | 6.1% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 5.6% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,768,609 | T→C | 6.9% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,614 | A→C | 6.8% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 7.6% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 6.0% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,770,518 | T→C | 7.7% | L25P (CTC→CCC) | ypjK → | CP4‑57 prophage; putative inner membrane protein |
| RA | 2,778,123 | G→T | 11.0% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 11.1% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,838,222 | A→T | 6.5% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,902,494 | G→T | 6.8% | G200V (GGA→GTA) ‡ | ygcE → | putative kinase |
| RA | 2,902,495 | A→C | 6.3% | G200G (GGA→GGC) ‡ | ygcE → | putative kinase |
| RA | 2,918,017 | C→T | 6.2% | intergenic (+204/+28) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,019 | G→T | 5.9% | intergenic (+206/+26) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,020 | A→C | 5.9% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,022 | A→G | 5.9% | intergenic (+209/+23) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,924,185 | C→T | 5.2% | noncoding (340/369 nt) | csrB ← | CsrA‑binding sRNA, antagonizing CsrA regulation |
| RA | 2,951,471 | G→A | 5.2% | R331C (CGC→TGC) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,951,479 | T→C | 5.2% | Q328R (CAG→CGG) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,960,926 | G→C | 5.6% | G501G (GGC→GGG) ‡ | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,960,928 | C→G | 5.9% | G501R (GGC→CGC) ‡ | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,960,930 | G→C | 5.9% | S500C (TCC→TGC) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 3,015,583 | A→C | 6.3% | M142L (ATG→CTG) ‡ | mocA → | CTP:molybdopterin cytidylyltransferase |
| RA | 3,015,585 | G→T | 5.1% | M142I (ATG→ATT) ‡ | mocA → | CTP:molybdopterin cytidylyltransferase |
| RA | 3,140,351 | C→T | 5.9% | R150H (CGC→CAC) ‡ | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,140,352 | G→C | 6.2% | R150G (CGC→GGC) ‡ | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,140,353 | A→G | 5.8% | R149R (CGT→CGC) | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,180,497 | Δ1 bp | 8.5% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 8.8% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 9.9% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,192,129 | T→A | 5.9% | intergenic (‑190/‑79) | glgS ← / → yqiJ | motility and biofilm regulator/DUF1449 family inner membrane protein |
| RA | 3,192,132 | T→A | 6.0% | intergenic (‑193/‑76) | glgS ← / → yqiJ | motility and biofilm regulator/DUF1449 family inner membrane protein |
| RA | 3,206,172 | T→C | 5.8% | T29A (ACG→GCG) | ttdR ← | transcriptional activator of ttdABT |
| RA | 3,206,176 | C→A | 6.2% | A27A (GCG→GCT) | ttdR ← | transcriptional activator of ttdABT |
| RA | 3,239,609 | T→G | 9.4% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 9.9% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 10.5% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,288,032 | C→A | 9.7% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 10.7% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,318,079 | A→T | 6.6% | intergenic (‑73/+134) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,318,080 | A→T | 6.6% | intergenic (‑74/+133) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,339,818 | Δ1 bp | 7.1% | coding (248/810 nt) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,339,828:1 | +T | 5.4% | coding (238/810 nt) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,339,833 | G→A | 5.4% | S78L (TCG→TTG) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,437,908 | T→A | 7.0% | intergenic (+14/‑116) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,909 | A→T | 7.0% | intergenic (+15/‑115) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,910 | A→T | 7.0% | intergenic (+16/‑114) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,911 | T→A | 6.9% | intergenic (+17/‑113) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,439,588 | G→C | 6.7% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 6.0% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,471,357 | C→T | 5.5% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 5.1% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,477,878 | T→A | 10.6% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,544,689 | A→T | 5.2% | R52R (CGT→CGA) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,692 | C→G | 5.0% | G51G (GGG→GGC) ‡ | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,693 | C→G | 5.1% | G51A (GGG→GCG) ‡ | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,696 | A→T | 5.1% | F50Y (TTC→TAC) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,639,338 | T→C | 5.2% | intergenic (+197/+47) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,343 | T→A | 6.0% | intergenic (+202/+42) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,344 | T→A | 5.3% | intergenic (+203/+41) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,642,358 | T→A | 5.8% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 5.8% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,657,599 | T→A | 18.3% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 18.4% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 19.8% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,676,271 | A→T | 5.9% | intergenic (+163/+19) | yhjE → / ← yhjG | putative MFS transporter; membrane protein/putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,781,051 | C→G | 11.2% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,798,234 | A→T | 6.3% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 6.4% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,959,515 | T→A | 6.8% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,965,415 | G→T | 5.7% | L72L (CTC→CTA) | rhlB ← | ATP‑dependent RNA helicase |
| JC JC | 3,992,705 | IS5 (+) +4 bp | 100% | coding (1553‑1556/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,046,782 | G→T | 10.0% | intergenic (‑180/‑184) | yihG ← / → polA | inner membrane protein, inner membrane acyltransferase/5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,056,531 | A→G | 7.8% | intergenic (‑192/+94) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,532 | A→C | 7.4% | intergenic (‑193/+93) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,539 | T→A | 6.1% | intergenic (‑200/+86) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,540 | T→A | 6.1% | intergenic (‑201/+85) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,060,261 | G→T | 11.2% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 11.4% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,082,696 | G→C | 5.8% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,117,057 | T→C | 100% | T56A (ACC→GCC) | glpK ← | glycerol kinase |
| RA | 4,126,129 | A→T | 7.2% | S228T (TCC→ACC) | priA ← | Primosome factor n' (replication factor Y) |
| RA | 4,126,130 | A→T | 6.3% | G227G (GGT→GGA) | priA ← | Primosome factor n' (replication factor Y) |
| RA | 4,127,251 | C→T | 15.3% | intergenic (+26/+35) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,127,252 | A→G | 13.3% | intergenic (+27/+34) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,142,512 | C→A | 5.6% | intergenic (‑291/‑18) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,223,854 | T→C | 6.0% | R9R (CGT→CGC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,223,855 | G→A | 6.0% | A10T (GCG→ACG) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,261,358 | T→A | 7.6% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 7.2% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,262,250 | G→C | 5.7% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 5.4% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,270,142 | G→A | 5.4% | intergenic (+15/‑96) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,144 | G→C | 5.4% | intergenic (+17/‑94) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,146 | T→C | 5.1% | intergenic (+19/‑92) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,274,740 | G→A | 7.1% | intergenic (+79/+20) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,742 | T→A | 7.1% | intergenic (+81/+18) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,744 | T→C | 7.0% | intergenic (+83/+16) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,296,060 | C→T | 33.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,303,981 | G→T | 7.5% | Y43* (TAC→TAA) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,303,984 | A→C | 7.4% | A42A (GCT→GCG) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,312,080 | G→C | 7.0% | intergenic (‑38/+21) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,083 | G→C | 6.0% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,089 | A→G | 5.8% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,422,887 | G→A | 5.6% | A14A (GCG→GCA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,422,895 | C→G | 6.0% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,439,845 | T→A | 5.0% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,470,951 | A→C | 5.6% | intergenic (‑38/+35) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,952 | T→C | 5.3% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,957 | G→A | 5.4% | intergenic (‑44/+29) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,958 | G→T | 5.7% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,498,222 | A→T | 8.5% | intergenic (+282/‑50) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,498,223 | A→T | 8.5% | intergenic (+283/‑49) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,501,229 | A→G | 5.8% | intergenic (‑438/‑31) | yjgX ← / → yjgZ | pseudogene fragment/uncharacterized protein |
| RA | 4,520,500 | Δ1 bp | 12.5% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 10.8% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,532,534 | G→C | 7.3% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 7.1% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,581,139 | G→A | 6.3% | C108C (TGC→TGT) | hsdS ← | specificity determinant for hsdM and hsdR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423755–3424234 | 3424543–3424239 | 6–789 | 42 [39] | [39] 41 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 382323 | NA (NA) | 4 (0.040) | 4/314 | NT | NA | noncoding (1064/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382348 | NA (NA) | noncoding (1089/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1207790 = | 39 (0.390) | 75 (0.840) | 63/292 | NT | 67.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 38 (0.420) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 36 (0.360) | 60 (0.670) | 52/292 | NT | 63.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 38 (0.420) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1826256 | 75 (0.750) | 5 (0.050) | 5/316 | NT | 6.6% | coding (668/969 nt) | astE | succinylglutamate desuccinylase |
| ? | NC_000913 | = 1826287 | 68 (0.700) | coding (637/969 nt) | astE | succinylglutamate desuccinylase | |||||
| * | ? | NC_000913 | 2330956 = | 75 (0.750) | 4 (0.040) | 4/308 | NT | 5.2% | pseudogene (3447/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | 2330992 = | 75 (0.790) | pseudogene (3411/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| * | ? | NC_000913 | = 2557039 | 80 (0.800) | 4 (0.040) | 4/314 | NT | 5.0% | coding (259/888 nt) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) |
| ? | NC_000913 | = 2557071 | 73 (0.760) | coding (227/888 nt) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) | |||||
| * | ? | NC_000913 | = 3231308 | 89 (0.900) | 5 (0.050) | 5/310 | NT | 5.9% | noncoding (57/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 3231327 | 75 (0.790) | noncoding (76/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 3721045 = | 109 (1.100) | 298 (3.020) | 173/322 | NT | 72.8% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 114 (1.150) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | = 4166372 | 46 (0.460) | 3 (0.030) | 3/314 | NT | 7.0% | intergenic (+87/‑287) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4166399 | 35 (0.360) | intergenic (+114/‑260) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 4171273 = | 0 (0.000) | 3 (0.030) | 3/312 | NT | 100% | noncoding (2633/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | 4212649 = | NA (NA) | noncoding (2607/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4390972 = | 104 (1.050) | 6 (0.060) | 4/314 | NT | 5.6% | coding (538/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A |
| ? | NC_000913 | 4391029 = | 101 (1.050) | coding (481/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A | |||||