Thu Jan 12 15:46:48 2017

/home/pphaneuf/breseq/breseq-0.29.0-Linux-x86_64/bin/breseq -p -j 8 --polymorphism-frequency-cutoff 0.15 -r NC_000913_3.gb -o qtrim-IND_KHP_HOT_A9_F200_I0_R1 qtrim-IND_KHP_HOT_A9_F200_I0_R1_S41_L004_R1_001.fastq qtrim-IND_KHP_HOT_A9_F200_I0_R1_S41_L004_R2_001.fastq