mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.30.0 revision f53f5bf51c1f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC JC | 2,806,928 | IS2 (+) +5 bp | coding (65‑69/738 nt) | ygaZ → | putative L‑valine exporter, norvaline resistance protein |
| MC JC | 3,912,832 | 6827 bp→81 bp | [atpC]–[atpI] | [atpC], atpD, atpG, atpA, atpH, atpF, atpE, atpB, [atpI] | |
| RA | 4,180,068 | C→T | H526Y (CAC→TAC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,625,093 | A→C | T177P (ACC→CCC) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207014 = | 33 (0.130) | 181 (0.760) | 108/522 | 0.8 | 84.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1208843 = | 35 (0.150) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207029 | 35 (0.140) | 198 (0.840) | 110/522 | 0.7 | 85.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1208826 | 35 (0.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||