#=GENOME_DIFF 1.0 #=AUTHOR breseq 0.27.1 revision 87c22d663cc3 #=CREATED 22:47:08 21 Apr 2016 #=COMMAND breseq -j 8 -r NC_000913_3.gb -o ALE-IL30 ALE-IL30_S38_L004_R2_001.fastq.gz ALE-IL30_S38_L003_R1_001.fastq.gz ALE-IL30_S38_L001_R2_001.fastq.gz ALE-IL30_S38_L002_R1_001.fastq.gz ALE-IL30_S38_L001_R1_001.fastq.gz ALE-IL30_S38_L003_R2_001.fastq.gz ALE-IL30_S38_L004_R1_001.fastq.gz ALE-IL30_S38_L002_R2_001.fastq.gz #=REFSEQ NC_000913_3.gb #=READSEQ ALE-IL30_S38_L004_R2_001.fastq.gz #=READSEQ ALE-IL30_S38_L003_R1_001.fastq.gz #=READSEQ ALE-IL30_S38_L001_R2_001.fastq.gz #=READSEQ ALE-IL30_S38_L002_R1_001.fastq.gz #=READSEQ ALE-IL30_S38_L001_R1_001.fastq.gz #=READSEQ ALE-IL30_S38_L003_R2_001.fastq.gz #=READSEQ ALE-IL30_S38_L004_R1_001.fastq.gz #=READSEQ ALE-IL30_S38_L002_R2_001.fastq.gz DEL 1 78,83 NC_000913 257908 776 DEL 2 128 NC_000913 1673557 120 DEL 3 79,131 NC_000913 1978503 776 DEL 4 33,34 NC_000913 2173363 2 INS 5 64 NC_000913 3560455 G INS 6 72,73 NC_000913 4296381 GC RA 7 . NC_000913 107554 0 G T bias_e_value=2.81748e-43 bias_p_value=6.06998e-50 consensus_score=1252.5 fisher_strand_p_value=5.09629e-52 frequency=2.023e-01 ks_quality_p_value=1 major_base=G major_cov=63/288 major_frequency=7.977e-01 minor_base=T minor_cov=89/0 new_cov=89/0 polymorphism_frequency=2.023e-01 polymorphism_score=130.6 prediction=polymorphism ref_cov=63/288 total_cov=153/288 RA 8 . NC_000913 164601 0 T G bias_e_value=1.15427e-29 bias_p_value=2.48676e-36 consensus_score=585.5 fisher_strand_p_value=2.84353e-38 frequency=2.189e-01 ks_quality_p_value=1 major_base=T major_cov=15/167 major_frequency=7.811e-01 minor_base=G minor_cov=51/0 new_cov=51/0 polymorphism_frequency=2.189e-01 polymorphism_score=48.6 prediction=polymorphism ref_cov=15/167 total_cov=100/167 RA 9 . NC_000913 261048 0 G T bias_e_value=4586590 bias_p_value=0.988137 consensus_score=350.4 fisher_strand_p_value=0.849975 frequency=4.496e-01 ks_quality_p_value=1 major_base=G major_cov=111/140 major_frequency=5.504e-01 minor_base=T minor_cov=93/112 new_cov=93/112 polymorphism_frequency=4.496e-01 polymorphism_score=inf prediction=polymorphism ref_cov=111/140 total_cov=204/252 RA 10 . NC_000913 422429 0 T G bias_e_value=9.02834e-39 bias_p_value=1.94507e-45 consensus_score=659.1 fisher_strand_p_value=1.7904e-47 frequency=2.893e-01 ks_quality_p_value=1 major_base=T major_cov=71/214 major_frequency=7.107e-01 minor_base=G minor_cov=114/2 new_cov=114/2 polymorphism_frequency=2.893e-01 polymorphism_score=111.5 prediction=polymorphism ref_cov=71/214 total_cov=187/216 RA 11 . NC_000913 422432 0 T G bias_e_value=7.91715e-28 bias_p_value=1.70568e-34 consensus_score=888.5 fisher_strand_p_value=2.05071e-36 frequency=2.186e-01 ks_quality_p_value=1 major_base=T major_cov=96/215 major_frequency=7.814e-01 minor_base=G minor_cov=87/0 new_cov=87/0 polymorphism_frequency=2.186e-01 polymorphism_score=64.9 prediction=polymorphism ref_cov=96/215 total_cov=187/216 RA 12 . NC_000913 422435 0 T G bias_e_value=5.4558e-29 bias_p_value=1.1754e-35 consensus_score=889.8 fisher_strand_p_value=1.36863e-37 frequency=2.214e-01 ks_quality_p_value=1 major_base=T major_cov=90/216 major_frequency=7.786e-01 minor_base=G minor_cov=87/0 new_cov=87/0 polymorphism_frequency=2.214e-01 polymorphism_score=71.6 prediction=polymorphism ref_cov=90/216 total_cov=186/216 RA 13 . NC_000913 423552 0 T G bias_e_value=7.30703e-27 bias_p_value=1.57423e-33 consensus_score=598.6 fisher_strand_p_value=1.94529e-35 frequency=2.675e-01 ks_quality_p_value=1 major_base=T major_cov=168/73 major_frequency=7.325e-01 minor_base=G minor_cov=0/88 new_cov=0/88 polymorphism_frequency=2.675e-01 polymorphism_score=84.7 prediction=polymorphism ref_cov=168/73 total_cov=170/161 RA 14 . NC_000913 736686 0 G T bias_e_value=3850020 bias_p_value=0.829449 consensus_score=22.3 fisher_strand_p_value=0.526192 frequency=5.444e-01 ks_quality_p_value=0.904861 major_base=T major_cov=124/146 major_frequency=5.444e-01 minor_base=G minor_cov=97/129 new_cov=124/146 polymorphism_frequency=5.444e-01 polymorphism_score=inf prediction=polymorphism ref_cov=97/129 total_cov=221/275 RA 15 . NC_000913 743512 0 G T bias_e_value=499856 bias_p_value=0.107689 consensus_score=96.9 fisher_strand_p_value=0.922449 frequency=5.000e-01 ks_quality_p_value=0.0243399 major_base=G major_cov=108/103 major_frequency=5.000e-01 minor_base=T minor_cov=106/105 new_cov=106/105 polymorphism_frequency=5.000e-01 polymorphism_score=inf prediction=polymorphism ref_cov=108/103 total_cov=215/208 RA 16 . NC_000913 935551 0 A C bias_e_value=1.85504e-12 bias_p_value=3.99651e-19 consensus_score=416.8 fisher_strand_p_value=8.46386e-21 frequency=2.423e-01 ks_quality_p_value=1 major_base=A major_cov=79/118 major_frequency=7.577e-01 minor_base=C minor_cov=63/0 new_cov=63/0 polymorphism_frequency=2.423e-01 polymorphism_score=53.6 prediction=polymorphism ref_cov=79/118 total_cov=162/120 RA 17 . NC_000913 935565 0 C A bias_e_value=0.00254813 bias_p_value=5.48971e-10 consensus_score=609.5 fisher_strand_p_value=2.14742e-11 frequency=2.058e-01 ks_quality_p_value=1 major_base=C major_cov=103/117 major_frequency=7.942e-01 minor_base=A minor_cov=53/4 new_cov=53/4 polymorphism_frequency=2.058e-01 polymorphism_score=20.8 prediction=polymorphism ref_cov=103/117 total_cov=166/121 RA 18 . NC_000913 1189808 0 G T bias_e_value=2388760 bias_p_value=0.514635 consensus_score=114.9 fisher_strand_p_value=0.833805 frequency=4.959e-01 ks_quality_p_value=0.234497 major_base=G major_cov=98/86 major_frequency=5.041e-01 minor_base=T minor_cov=99/82 new_cov=99/82 polymorphism_frequency=4.959e-01 polymorphism_score=inf prediction=polymorphism ref_cov=98/86 total_cov=197/168 RA 19 . NC_000913 1286870 0 C A bias_e_value=2341 bias_p_value=0.000504346 consensus_score=374.2 fisher_strand_p_value=4.58949e-05 frequency=2.000e-01 ks_quality_p_value=1 major_base=C major_cov=71/61 major_frequency=8.000e-01 minor_base=A minor_cov=30/3 new_cov=30/3 polymorphism_frequency=2.000e-01 polymorphism_score=21.1 prediction=polymorphism ref_cov=71/61 total_cov=103/68 RA 20 . NC_000913 1286965 0 A C bias_e_value=3945040 bias_p_value=0.849923 consensus_score=176.4 fisher_strand_p_value=0.504866 frequency=2.678e-01 ks_quality_p_value=1 major_base=A major_cov=60/74 major_frequency=7.322e-01 minor_base=C minor_cov=25/24 new_cov=25/24 polymorphism_frequency=2.678e-01 polymorphism_score=46.1 prediction=polymorphism ref_cov=60/74 total_cov=107/110 RA 21 . NC_000913 1422898 0 C A bias_e_value=3211390 bias_p_value=0.691864 consensus_score=46.9 fisher_strand_p_value=0.326415 frequency=5.132e-01 ks_quality_p_value=1 major_base=A major_cov=108/106 major_frequency=5.132e-01 minor_base=C minor_cov=113/90 new_cov=108/106 polymorphism_frequency=5.132e-01 polymorphism_score=inf prediction=polymorphism ref_cov=113/90 total_cov=221/196 RA 22 . NC_000913 1552191 0 C A bias_e_value=7.38934e-07 bias_p_value=1.59196e-13 consensus_score=994.8 fisher_strand_p_value=4.68296e-15 frequency=2.462e-01 ks_quality_p_value=1 major_base=C major_cov=109/234 major_frequency=7.538e-01 minor_base=A minor_cov=83/29 new_cov=83/29 polymorphism_frequency=2.462e-01 polymorphism_score=87.4 prediction=polymorphism ref_cov=109/234 total_cov=200/268 RA 23 . NC_000913 1708805 0 T A bias_e_value=8099.32 bias_p_value=0.00174492 consensus_score=125.5 fisher_strand_p_value=0.000181492 frequency=2.072e-01 ks_quality_p_value=1 major_base=T major_cov=49/39 major_frequency=7.928e-01 minor_base=A minor_cov=22/1 new_cov=22/1 polymorphism_frequency=2.072e-01 polymorphism_score=16.3 prediction=polymorphism ref_cov=49/39 total_cov=79/58 RA 24 . NC_000913 1708901 0 A C bias_e_value=4222.25 bias_p_value=0.000909643 consensus_score=261.5 fisher_strand_p_value=8.79875e-05 frequency=2.655e-01 ks_quality_p_value=1 major_base=A major_cov=114/52 major_frequency=7.345e-01 minor_base=C minor_cov=56/4 new_cov=56/4 polymorphism_frequency=2.655e-01 polymorphism_score=59.4 prediction=polymorphism ref_cov=114/52 total_cov=176/63 RA 25 . NC_000913 1708910 0 G C bias_e_value=1390200 bias_p_value=0.299505 consensus_score=439.4 fisher_strand_p_value=0.0870262 frequency=2.166e-01 ks_quality_p_value=1 major_base=G major_cov=123/47 major_frequency=7.834e-01 minor_base=C minor_cov=40/7 new_cov=40/7 polymorphism_frequency=2.166e-01 polymorphism_score=26.1 prediction=polymorphism ref_cov=123/47 total_cov=173/63 RA 26 . NC_000913 1708930 0 C A bias_e_value=4481250 bias_p_value=0.965442 consensus_score=383.5 fisher_strand_p_value=0.748894 frequency=2.857e-01 ks_quality_p_value=1 major_base=C major_cov=128/47 major_frequency=7.143e-01 minor_base=A minor_cov=53/17 new_cov=53/17 polymorphism_frequency=2.857e-01 polymorphism_score=80.6 prediction=polymorphism ref_cov=128/47 total_cov=182/69 RA 27 . NC_000913 1907570 0 C A bias_e_value=804911 bias_p_value=0.173411 consensus_score=246.9 fisher_strand_p_value=1 frequency=4.671e-01 ks_quality_p_value=0.0414544 major_base=C major_cov=123/120 major_frequency=5.329e-01 minor_base=A minor_cov=107/106 new_cov=107/106 polymorphism_frequency=4.671e-01 polymorphism_score=inf prediction=polymorphism ref_cov=123/120 total_cov=230/227 RA 28 . NC_000913 1910654 0 G T bias_e_value=3316560 bias_p_value=0.714522 consensus_score=64.7 fisher_strand_p_value=0.348234 frequency=5.054e-01 ks_quality_p_value=0.997125 major_base=T major_cov=82/105 major_frequency=5.054e-01 minor_base=G minor_cov=90/93 new_cov=82/105 polymorphism_frequency=5.054e-01 polymorphism_score=inf prediction=polymorphism ref_cov=90/93 total_cov=173/198 RA 29 . NC_000913 1940462 0 G T bias_e_value=4102510 bias_p_value=0.883848 consensus_score=113.7 fisher_strand_p_value=0.917363 frequency=4.987e-01 ks_quality_p_value=0.60885 major_base=G major_cov=83/106 major_frequency=5.013e-01 minor_base=T minor_cov=81/107 new_cov=81/107 polymorphism_frequency=4.987e-01 polymorphism_score=inf prediction=polymorphism ref_cov=83/106 total_cov=164/213 RA 30 . NC_000913 1961240 0 G T bias_e_value=3617160 bias_p_value=0.779283 consensus_score=137.7 fisher_strand_p_value=0.831604 frequency=4.873e-01 ks_quality_p_value=0.49808 major_base=G major_cov=83/98 major_frequency=5.127e-01 minor_base=T minor_cov=81/91 new_cov=81/91 polymorphism_frequency=4.873e-01 polymorphism_score=inf prediction=polymorphism ref_cov=83/98 total_cov=164/189 RA 31 . NC_000913 2037101 0 C A bias_e_value=780446 bias_p_value=0.16814 consensus_score=156.9 fisher_strand_p_value=0.711563 frequency=4.925e-01 ks_quality_p_value=0.0559458 major_base=C major_cov=123/115 major_frequency=5.075e-01 minor_base=A minor_cov=124/107 new_cov=124/107 polymorphism_frequency=4.925e-01 polymorphism_score=inf prediction=polymorphism ref_cov=123/115 total_cov=247/224 RA 32 . NC_000913 2063069 0 C A bias_e_value=374001 bias_p_value=0.0805749 consensus_score=142.3 fisher_strand_p_value=0.769945 frequency=4.809e-01 ks_quality_p_value=0.0202835 major_base=C major_cov=108/109 major_frequency=5.191e-01 minor_base=A minor_cov=103/98 new_cov=103/98 polymorphism_frequency=4.809e-01 polymorphism_score=inf prediction=polymorphism ref_cov=108/109 total_cov=211/212 RA 33 . NC_000913 2173361 0 C . bias_e_value=4641650 bias_p_value=1 consensus_score=1553.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.999312 major_base=. major_cov=184/139 major_frequency=9.969e-01 minor_base=C minor_cov=1/0 new_cov=184/139 polymorphism_frequency=9.969e-01 polymorphism_score=-2.4 prediction=consensus ref_cov=1/0 total_cov=185/139 RA 34 . NC_000913 2173362 0 C . bias_e_value=4641650 bias_p_value=1 consensus_score=1553.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=184/139 major_frequency=9.969e-01 minor_base=C minor_cov=1/0 new_cov=184/139 polymorphism_frequency=9.969e-01 polymorphism_score=-3.1 prediction=consensus ref_cov=1/0 total_cov=185/139 RA 35 . NC_000913 2213458 0 C A bias_e_value=4624630 bias_p_value=0.996333 consensus_score=87.1 fisher_strand_p_value=0.915597 frequency=5.014e-01 ks_quality_p_value=1 major_base=A major_cov=89/89 major_frequency=5.014e-01 minor_base=C minor_cov=90/87 new_cov=89/89 polymorphism_frequency=5.014e-01 polymorphism_score=inf prediction=polymorphism ref_cov=90/87 total_cov=179/176 RA 36 . NC_000913 2229190 0 T G bias_e_value=1230990 bias_p_value=0.265206 consensus_score=237.8 fisher_strand_p_value=0.0734373 frequency=2.344e-01 ks_quality_p_value=1 major_base=T major_cov=23/124 major_frequency=7.656e-01 minor_base=G minor_cov=2/43 new_cov=2/43 polymorphism_frequency=2.344e-01 polymorphism_score=31.0 prediction=polymorphism ref_cov=23/124 total_cov=39/169 RA 37 . NC_000913 2312578 0 G T bias_e_value=1865.99 bias_p_value=0.00040201 consensus_score=98.0 fisher_strand_p_value=0.0690283 frequency=4.943e-01 ks_quality_p_value=0.00051821 major_base=G major_cov=109/113 major_frequency=5.057e-01 minor_base=T minor_cov=126/91 new_cov=126/91 polymorphism_frequency=4.943e-01 polymorphism_score=inf prediction=polymorphism ref_cov=109/113 total_cov=235/204 RA 38 . NC_000913 2396740 0 C A bias_e_value=4148.49 bias_p_value=0.000893754 consensus_score=100.8 fisher_strand_p_value=0.923275 frequency=4.988e-01 ks_quality_p_value=9.34584e-05 major_base=C major_cov=104/112 major_frequency=5.012e-01 minor_base=A minor_cov=102/113 new_cov=102/113 polymorphism_frequency=4.988e-01 polymorphism_score=inf prediction=polymorphism ref_cov=104/112 total_cov=206/226 RA 39 . NC_000913 2456163 0 C A bias_e_value=61036.4 bias_p_value=0.0131497 consensus_score=142.1 fisher_strand_p_value=0.0330855 frequency=4.971e-01 ks_quality_p_value=0.0542791 major_base=C major_cov=104/153 major_frequency=5.029e-01 minor_base=A minor_cov=127/127 new_cov=127/127 polymorphism_frequency=4.971e-01 polymorphism_score=inf prediction=polymorphism ref_cov=104/153 total_cov=232/280 RA 40 . NC_000913 2560985 0 C A bias_e_value=4615520 bias_p_value=0.99437 consensus_score=790.8 fisher_strand_p_value=0.895781 frequency=2.033e-01 ks_quality_p_value=1 major_base=C major_cov=137/149 major_frequency=7.967e-01 minor_base=A minor_cov=36/37 new_cov=36/37 polymorphism_frequency=2.033e-01 polymorphism_score=47.2 prediction=polymorphism ref_cov=137/149 total_cov=173/186 RA 41 . NC_000913 2560996 0 G T bias_e_value=1106080 bias_p_value=0.238295 consensus_score=712.3 fisher_strand_p_value=0.0634069 frequency=2.348e-01 ks_quality_p_value=1 major_base=G major_cov=140/137 major_frequency=7.652e-01 minor_base=T minor_cov=33/52 new_cov=33/52 polymorphism_frequency=2.348e-01 polymorphism_score=66.4 prediction=polymorphism ref_cov=140/137 total_cov=173/190 RA 42 . NC_000913 2640117 0 G T bias_e_value=2207570 bias_p_value=0.4756 consensus_score=126.9 fisher_strand_p_value=0.548167 frequency=4.962e-01 ks_quality_p_value=0.314639 major_base=G major_cov=92/109 major_frequency=5.038e-01 minor_base=T minor_cov=97/101 new_cov=97/101 polymorphism_frequency=4.962e-01 polymorphism_score=inf prediction=polymorphism ref_cov=92/109 total_cov=189/210 RA 43 . NC_000913 2672385 0 A C bias_e_value=3.61418e-22 bias_p_value=7.78642e-29 consensus_score=829.0 fisher_strand_p_value=1.11281e-30 frequency=2.005e-01 ks_quality_p_value=1 major_base=A major_cov=92/199 major_frequency=7.995e-01 minor_base=C minor_cov=73/0 new_cov=73/0 polymorphism_frequency=2.005e-01 polymorphism_score=43.1 prediction=polymorphism ref_cov=92/199 total_cov=172/199 RA 44 . NC_000913 2818158 0 T A bias_e_value=1276300 bias_p_value=0.274967 consensus_score=333.2 fisher_strand_p_value=0.109861 frequency=2.536e-01 ks_quality_p_value=0.702813 major_base=T major_cov=70/86 major_frequency=7.464e-01 minor_base=A minor_cov=17/36 new_cov=17/36 polymorphism_frequency=2.536e-01 polymorphism_score=111.2 prediction=polymorphism ref_cov=70/86 total_cov=88/123 RA 45 . NC_000913 2818162 0 A T bias_e_value=7694.78 bias_p_value=0.00165777 consensus_score=316.0 fisher_strand_p_value=0.00849573 frequency=2.022e-01 ks_quality_p_value=0.0201758 major_base=A major_cov=67/79 major_frequency=7.978e-01 minor_base=T minor_cov=8/29 new_cov=8/29 polymorphism_frequency=2.022e-01 polymorphism_score=85.5 prediction=polymorphism ref_cov=67/79 total_cov=76/113 RA 46 . NC_000913 2947465 0 T . bias_e_value=1423740 bias_p_value=0.30673 consensus_score=477.0 fisher_strand_p_value=0.206856 frequency=2.446e-01 ks_quality_p_value=0.435117 major_base=T major_cov=33/106 major_frequency=7.554e-01 minor_base=. minor_cov=6/39 new_cov=6/39 polymorphism_frequency=2.446e-01 polymorphism_score=164.9 prediction=polymorphism ref_cov=33/106 total_cov=40/147 RA 47 . NC_000913 2947467 0 A C bias_e_value=1475230 bias_p_value=0.317825 consensus_score=256.0 fisher_strand_p_value=0.188105 frequency=2.817e-01 ks_quality_p_value=0.503247 major_base=A major_cov=18/84 major_frequency=7.183e-01 minor_base=C minor_cov=3/37 new_cov=3/37 polymorphism_frequency=2.817e-01 polymorphism_score=142.4 prediction=polymorphism ref_cov=18/84 total_cov=21/123 RA 48 . NC_000913 2947481 1 . A bias_e_value=2507780 bias_p_value=0.540277 consensus_score=199.6 fisher_strand_p_value=1 frequency=2.469e-01 ks_quality_p_value=0.211632 major_base=. major_cov=10/51 major_frequency=7.531e-01 minor_base=A minor_cov=3/17 new_cov=3/17 polymorphism_frequency=2.469e-01 polymorphism_score=103.6 prediction=polymorphism ref_cov=10/51 total_cov=13/68 RA 49 . NC_000913 2947591 0 A . bias_e_value=4609270 bias_p_value=0.993023 consensus_score=208.5 fisher_strand_p_value=1 frequency=2.192e-01 ks_quality_p_value=0.884222 major_base=A major_cov=52/5 major_frequency=7.808e-01 minor_base=. minor_cov=15/1 new_cov=15/1 polymorphism_frequency=2.192e-01 polymorphism_score=55.4 prediction=polymorphism ref_cov=52/5 total_cov=67/7 RA 50 . NC_000913 3078981 0 G T bias_e_value=633226 bias_p_value=0.136423 consensus_score=33.3 fisher_strand_p_value=0.0303501 frequency=5.292e-01 ks_quality_p_value=1 major_base=T major_cov=153/92 major_frequency=5.292e-01 minor_base=G minor_cov=114/104 new_cov=153/92 polymorphism_frequency=5.292e-01 polymorphism_score=inf prediction=polymorphism ref_cov=114/104 total_cov=267/196 RA 51 . NC_000913 3103477 1 . G bias_e_value=3095350 bias_p_value=0.666864 consensus_score=141.1 fisher_strand_p_value=0.352199 frequency=3.985e-01 ks_quality_p_value=0.865255 major_base=. major_cov=100/137 major_frequency=6.015e-01 minor_base=G minor_cov=74/83 new_cov=74/83 polymorphism_frequency=3.985e-01 polymorphism_score=inf prediction=polymorphism ref_cov=100/137 total_cov=174/220 RA 52 . NC_000913 3247952 0 G T bias_e_value=1490120 bias_p_value=0.321033 consensus_score=302.5 fisher_strand_p_value=1 frequency=4.589e-01 ks_quality_p_value=0.0960282 major_base=G major_cov=131/119 major_frequency=5.411e-01 minor_base=T minor_cov=112/100 new_cov=112/100 polymorphism_frequency=4.589e-01 polymorphism_score=inf prediction=polymorphism ref_cov=131/119 total_cov=243/219 RA 53 . NC_000913 3269988 0 A T bias_e_value=953423 bias_p_value=0.205406 consensus_score=323.7 fisher_strand_p_value=0.0518875 frequency=2.011e-01 ks_quality_p_value=1 major_base=A major_cov=23/124 major_frequency=7.989e-01 minor_base=T minor_cov=1/36 new_cov=1/36 polymorphism_frequency=2.011e-01 polymorphism_score=24.8 prediction=polymorphism ref_cov=23/124 total_cov=25/168 RA 54 . NC_000913 3269994 0 G T bias_e_value=12682.8 bias_p_value=0.00273239 consensus_score=246.3 fisher_strand_p_value=0.000299861 frequency=2.866e-01 ks_quality_p_value=1 major_base=G major_cov=23/94 major_frequency=7.134e-01 minor_base=T minor_cov=0/47 new_cov=0/47 polymorphism_frequency=2.866e-01 polymorphism_score=22.2 prediction=polymorphism ref_cov=23/94 total_cov=23/164 RA 55 . NC_000913 3270151 0 A C bias_e_value=9.74822 bias_p_value=2.10016e-06 consensus_score=235.7 fisher_strand_p_value=1.24264e-07 frequency=2.293e-01 ks_quality_p_value=1 major_base=A major_cov=97/61 major_frequency=7.707e-01 minor_base=C minor_cov=46/1 new_cov=46/1 polymorphism_frequency=2.293e-01 polymorphism_score=27.2 prediction=polymorphism ref_cov=97/61 total_cov=150/63 RA 56 . NC_000913 3270163 0 C A bias_e_value=844.764 bias_p_value=0.000181996 consensus_score=359.3 fisher_strand_p_value=1.50346e-05 frequency=2.311e-01 ks_quality_p_value=1 major_base=C major_cov=94/69 major_frequency=7.689e-01 minor_base=A minor_cov=44/5 new_cov=44/5 polymorphism_frequency=2.311e-01 polymorphism_score=17.6 prediction=polymorphism ref_cov=94/69 total_cov=165/76 RA 57 . NC_000913 3270167 0 C G bias_e_value=0.134198 bias_p_value=2.89117e-08 consensus_score=381.4 fisher_strand_p_value=1.34953e-09 frequency=2.419e-01 ks_quality_p_value=1 major_base=C major_cov=87/76 major_frequency=7.581e-01 minor_base=G minor_cov=50/2 new_cov=50/2 polymorphism_frequency=2.419e-01 polymorphism_score=43.6 prediction=polymorphism ref_cov=87/76 total_cov=172/83 RA 58 . NC_000913 3310461 0 C A bias_e_value=3816470 bias_p_value=0.822221 consensus_score=330.3 fisher_strand_p_value=0.466521 frequency=4.649e-01 ks_quality_p_value=1 major_base=C major_cov=139/120 major_frequency=5.351e-01 minor_base=A minor_cov=113/112 new_cov=113/112 polymorphism_frequency=4.649e-01 polymorphism_score=inf prediction=polymorphism ref_cov=139/120 total_cov=252/233 RA 59 . NC_000913 3395691 0 G . bias_e_value=611496 bias_p_value=0.131741 consensus_score=969.7 fisher_strand_p_value=0.767813 frequency=4.065e-01 ks_quality_p_value=0.0377945 major_base=G major_cov=128/126 major_frequency=5.935e-01 minor_base=. minor_cov=91/83 new_cov=91/83 polymorphism_frequency=4.065e-01 polymorphism_score=inf prediction=polymorphism ref_cov=128/126 total_cov=219/209 RA 60 . NC_000913 3395692 0 G . bias_e_value=1275150 bias_p_value=0.274719 consensus_score=957.6 fisher_strand_p_value=0.767756 frequency=4.108e-01 ks_quality_p_value=0.100442 major_base=G major_cov=126/125 major_frequency=5.892e-01 minor_base=. minor_cov=91/84 new_cov=91/84 polymorphism_frequency=4.108e-01 polymorphism_score=inf prediction=polymorphism ref_cov=126/125 total_cov=219/209 RA 61 . NC_000913 3395693 0 C . bias_e_value=2766890 bias_p_value=0.596101 consensus_score=978.7 fisher_strand_p_value=0.694384 frequency=4.079e-01 ks_quality_p_value=0.359541 major_base=C major_cov=126/128 major_frequency=5.921e-01 minor_base=. minor_cov=91/84 new_cov=91/84 polymorphism_frequency=4.079e-01 polymorphism_score=inf prediction=polymorphism ref_cov=126/128 total_cov=217/212 RA 62 . NC_000913 3395694 0 T . bias_e_value=2087580 bias_p_value=0.44975 consensus_score=952.7 fisher_strand_p_value=0.62417 frequency=4.056e-01 ks_quality_p_value=0.253322 major_base=T major_cov=127/128 major_frequency=5.944e-01 minor_base=. minor_cov=91/83 new_cov=91/83 polymorphism_frequency=4.056e-01 polymorphism_score=inf prediction=polymorphism ref_cov=127/128 total_cov=218/211 RA 63 . NC_000913 3395695 0 G . bias_e_value=343441 bias_p_value=0.0739911 consensus_score=962.1 fisher_strand_p_value=0.768696 frequency=4.079e-01 ks_quality_p_value=0.0182826 major_base=G major_cov=128/126 major_frequency=5.921e-01 minor_base=. minor_cov=91/84 new_cov=91/84 polymorphism_frequency=4.079e-01 polymorphism_score=inf prediction=polymorphism ref_cov=128/126 total_cov=219/211 RA 64 . NC_000913 3560455 1 . G bias_e_value=4518750 bias_p_value=0.973522 consensus_score=1699.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.778884 major_base=G major_cov=188/250 major_frequency=9.977e-01 minor_base=. minor_cov=0/1 new_cov=188/250 polymorphism_frequency=9.977e-01 polymorphism_score=-3.8 prediction=consensus ref_cov=0/1 total_cov=188/251 RA 65 . NC_000913 3642902 0 C A bias_e_value=941609 bias_p_value=0.202861 consensus_score=120.7 fisher_strand_p_value=0.093778 frequency=5.041e-01 ks_quality_p_value=0.544154 major_base=A major_cov=110/75 major_frequency=5.041e-01 minor_base=C minor_cov=92/90 new_cov=110/75 polymorphism_frequency=5.041e-01 polymorphism_score=inf prediction=polymorphism ref_cov=92/90 total_cov=202/165 RA 66 . NC_000913 3653367 0 C A bias_e_value=368.576 bias_p_value=7.94062e-05 consensus_score=241.6 fisher_strand_p_value=0.230469 frequency=4.672e-01 ks_quality_p_value=2.64902e-05 major_base=C major_cov=149/143 major_frequency=5.328e-01 minor_base=A minor_cov=144/112 new_cov=144/112 polymorphism_frequency=4.672e-01 polymorphism_score=inf prediction=polymorphism ref_cov=149/143 total_cov=293/256 RA 67 . NC_000913 3781032 0 T G bias_e_value=8.08281e-31 bias_p_value=1.74136e-37 consensus_score=777.3 fisher_strand_p_value=1.93179e-39 frequency=2.030e-01 ks_quality_p_value=1 major_base=T major_cov=49/218 major_frequency=7.970e-01 minor_base=G minor_cov=68/0 new_cov=68/0 polymorphism_frequency=2.030e-01 polymorphism_score=60.8 prediction=polymorphism ref_cov=49/218 total_cov=149/218 RA 68 . NC_000913 3963461 0 G T bias_e_value=4349040 bias_p_value=0.93696 consensus_score=350.9 fisher_strand_p_value=0.77372 frequency=4.465e-01 ks_quality_p_value=0.861585 major_base=G major_cov=113/130 major_frequency=5.535e-01 minor_base=T minor_cov=94/102 new_cov=94/102 polymorphism_frequency=4.465e-01 polymorphism_score=inf prediction=polymorphism ref_cov=113/130 total_cov=207/232 RA 69 . NC_000913 4105432 0 C A bias_e_value=3747680 bias_p_value=0.807403 consensus_score=41.3 fisher_strand_p_value=0.527292 frequency=5.244e-01 ks_quality_p_value=0.848859 major_base=A major_cov=121/137 major_frequency=5.244e-01 minor_base=C minor_cov=103/131 new_cov=121/137 polymorphism_frequency=5.244e-01 polymorphism_score=inf prediction=polymorphism ref_cov=103/131 total_cov=224/269 RA 70 . NC_000913 4186425 0 C T bias_e_value=1508470 bias_p_value=0.324986 consensus_score=56.6 fisher_strand_p_value=0.153765 frequency=5.159e-01 ks_quality_p_value=0.635527 major_base=T major_cov=139/121 major_frequency=5.159e-01 minor_base=C minor_cov=114/130 new_cov=139/121 polymorphism_frequency=5.159e-01 polymorphism_score=inf prediction=polymorphism ref_cov=114/130 total_cov=254/251 RA 71 . NC_000913 4296060 0 C T bias_e_value=1.19381e-07 bias_p_value=2.57194e-14 consensus_score=797.1 fisher_strand_p_value=0.927547 frequency=2.687e-01 ks_quality_p_value=7.72995e-16 major_base=C major_cov=226/223 major_frequency=7.313e-01 minor_base=T minor_cov=82/83 new_cov=82/83 polymorphism_frequency=2.687e-01 polymorphism_score=inf prediction=polymorphism ref_cov=226/223 total_cov=339/319 RA 72 . NC_000913 4296380 1 . C bias_e_value=4274950 bias_p_value=0.920998 consensus_score=922.5 fisher_strand_p_value=0.629817 frequency=1 ks_quality_p_value=1 major_base=C major_cov=120/145 major_frequency=9.851e-01 minor_base=. minor_cov=1/3 new_cov=120/145 polymorphism_frequency=9.851e-01 polymorphism_score=3.8 prediction=consensus ref_cov=1/3 total_cov=122/152 RA 73 . NC_000913 4296380 2 . G bias_e_value=4275860 bias_p_value=0.921193 consensus_score=936.4 fisher_strand_p_value=0.63024 frequency=1 ks_quality_p_value=1 major_base=G major_cov=121/147 major_frequency=9.853e-01 minor_base=. minor_cov=1/3 new_cov=121/147 polymorphism_frequency=9.853e-01 polymorphism_score=4.0 prediction=consensus ref_cov=1/3 total_cov=122/152 RA 74 . NC_000913 4392561 0 C A bias_e_value=12.9671 bias_p_value=2.79363e-06 consensus_score=577.8 fisher_strand_p_value=1.68317e-07 frequency=2.031e-01 ks_quality_p_value=1 major_base=C major_cov=134/70 major_frequency=7.969e-01 minor_base=A minor_cov=51/1 new_cov=51/1 polymorphism_frequency=2.031e-01 polymorphism_score=22.0 prediction=polymorphism ref_cov=134/70 total_cov=185/73 RA 75 . NC_000913 4456993 0 C A bias_e_value=65076.6 bias_p_value=0.0140201 consensus_score=244.8 fisher_strand_p_value=1 frequency=4.700e-01 ks_quality_p_value=0.00193435 major_base=C major_cov=146/110 major_frequency=5.300e-01 minor_base=A minor_cov=129/98 new_cov=129/98 polymorphism_frequency=4.700e-01 polymorphism_score=inf prediction=polymorphism ref_cov=146/110 total_cov=275/208 RA 76 . NC_000913 4606192 0 G C bias_e_value=574702 bias_p_value=0.123814 consensus_score=134.4 fisher_strand_p_value=0.0268043 frequency=3.469e-01 ks_quality_p_value=1 major_base=G major_cov=16/48 major_frequency=6.531e-01 minor_base=C minor_cov=2/32 new_cov=2/32 polymorphism_frequency=3.469e-01 polymorphism_score=31.8 prediction=polymorphism ref_cov=16/48 total_cov=19/88 RA 77 . NC_000913 4606197 0 G T bias_e_value=35782 bias_p_value=0.00770889 consensus_score=126.0 fisher_strand_p_value=0.000971272 frequency=2.805e-01 ks_quality_p_value=1 major_base=G major_cov=19/40 major_frequency=7.195e-01 minor_base=T minor_cov=0/23 new_cov=0/23 polymorphism_frequency=2.805e-01 polymorphism_score=14.1 prediction=polymorphism ref_cov=19/40 total_cov=19/78 MC 78 . NC_000913 257908 258683 770 0 left_inside_cov=37 left_outside_cov=531 right_inside_cov=2 right_outside_cov=490 MC 79 . NC_000913 1978503 1979278 768 0 left_inside_cov=0 left_outside_cov=467 right_inside_cov=0 right_outside_cov=469 MC 80 . NC_000913 3423671 3424613 942 0 left_inside_cov=274 left_outside_cov=279 right_inside_cov=272 right_outside_cov=276 JC 81 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 circular_chromosome=1 coverage_minus=243 coverage_plus=231 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=149 key=NC_000913__1__1__NC_000913__4641652__-1__0____151__151__0__0 max_left=150 max_left_minus=150 max_left_plus=149 max_min_left=75 max_min_left_minus=75 max_min_left_plus=74 max_min_right=75 max_min_right_minus=75 max_min_right_plus=75 max_pos_hash_score=300 max_right=148 max_right_minus=148 max_right_plus=148 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.07 new_junction_read_count=478 polymorphism_frequency=1.000e+00 pos_hash_score=239 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=474 JC 82 . NC_000913 22676 -1 NC_000913 1002964 1 0 alignment_overlap=8 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=6.978e-03 junction_possible_overlap_registers=141 key=NC_000913__22676__-1__NC_000913__1002956__1__8____151__151__0__0 max_left=142 max_left_minus=142 max_left_plus=59 max_min_left=59 max_min_left_minus=59 max_min_left_plus=59 max_min_right=1 max_min_right_minus=1 max_min_right_plus=0 max_pos_hash_score=284 max_right=69 max_right_minus=69 max_right_plus=69 neg_log10_pos_hash_p_value=48.3 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=6.978e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=451 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=427 side_2_redundant=0 total_non_overlap_reads=3 JC 83 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=223 coverage_plus=235 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=141 key=NC_000913__257907__-1__NC_000913__258676__1__8____151__151__0__0 max_left=142 max_left_minus=140 max_left_plus=142 max_min_left=71 max_min_left_minus=71 max_min_left_plus=71 max_min_right=71 max_min_right_minus=71 max_min_right_plus=70 max_pos_hash_score=284 max_right=143 max_right_minus=142 max_right_plus=143 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.08 new_junction_read_count=459 polymorphism_frequency=9.633e-01 pos_hash_score=230 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.08 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=37 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=458 JC 84 . NC_000913 257908 1 NC_000913 1673336 1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=1.496e-02 junction_possible_overlap_registers=149 key=NC_000913__257908__1__NC_000913__1673336__1__0____151__151__1__0 max_left=130 max_left_minus=75 max_left_plus=130 max_min_left=75 max_min_left_minus=75 max_min_left_plus=59 max_min_right=20 max_min_right_minus=0 max_min_right_plus=20 max_pos_hash_score=300 max_right=149 max_right_minus=149 max_right_plus=103 neg_log10_pos_hash_p_value=47.3 new_junction_coverage=0.01 new_junction_read_count=6 polymorphism_frequency=1.496e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=395 side_2_redundant=0 total_non_overlap_reads=6 JC 85 . NC_000913 258675 -1 NC_000913 1307993 1 0 alignment_overlap=0 coverage_minus=97 coverage_plus=114 flanking_left=151 flanking_right=151 frequency=5.128e-01 junction_possible_overlap_registers=149 key=NC_000913__258675__-1__NC_000913__1307993__1__0____151__151__1__0 max_left=148 max_left_minus=148 max_left_plus=147 max_min_left=74 max_min_left_minus=74 max_min_left_plus=73 max_min_right=75 max_min_right_minus=75 max_min_right_plus=75 max_pos_hash_score=300 max_right=150 max_right_minus=149 max_right_plus=150 neg_log10_pos_hash_p_value=3.2 new_junction_coverage=0.49 new_junction_read_count=221 polymorphism_frequency=5.128e-01 pos_hash_score=153 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.47 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=210 side_2_redundant=0 total_non_overlap_reads=211 JC 86 . NC_000913 275149 -1 NC_000913 295082 1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=6 flanking_left=151 flanking_right=151 frequency=5.323e-02 junction_possible_overlap_registers=149 key=NC_000913__275149__-1__NC_000913__295082__1__0____151__151__1__0 max_left=149 max_left_minus=148 max_left_plus=149 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=45 max_min_right_minus=37 max_min_right_plus=45 max_pos_hash_score=300 max_right=45 max_right_minus=37 max_right_plus=45 neg_log10_pos_hash_p_value=44.4 new_junction_coverage=0.06 new_junction_read_count=28 polymorphism_frequency=5.323e-02 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=498 side_2_redundant=0 total_non_overlap_reads=9 JC 87 . NC_000913 279163 1 NC_000913 1673336 1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=2.948e-02 junction_possible_overlap_registers=149 key=NC_000913__279163__1__NC_000913__1673336__1__0____151__151__1__0 max_left=59 max_left_minus=1 max_left_plus=59 max_min_left=59 max_min_left_minus=1 max_min_left_plus=59 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=149 max_right_minus=149 max_right_plus=103 neg_log10_pos_hash_p_value=49.5 new_junction_coverage=0.03 new_junction_read_count=12 polymorphism_frequency=2.948e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=395 side_2_redundant=0 total_non_overlap_reads=4 JC 88 . NC_000913 290634 1 NC_000913 1308001 -1 0 alignment_overlap=0 coverage_minus=46 coverage_plus=41 flanking_left=151 flanking_right=151 frequency=4.564e-01 junction_possible_overlap_registers=149 key=NC_000913__290634__1__NC_000913__1308001__-1__0____151__151__1__0 max_left=64 max_left_minus=63 max_left_plus=64 max_min_left=64 max_min_left_minus=63 max_min_left_plus=64 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=149 max_right_minus=148 max_right_plus=149 neg_log10_pos_hash_p_value=18.1 new_junction_coverage=0.41 new_junction_read_count=183 polymorphism_frequency=4.564e-01 pos_hash_score=66 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.49 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=218 side_2_redundant=0 total_non_overlap_reads=87 JC 89 . NC_000913 290634 1 NC_000913 2413609 -1 0 alignment_overlap=0 coverage_minus=80 coverage_plus=38 flanking_left=151 flanking_right=151 frequency=4.770e-01 junction_possible_overlap_registers=149 key=NC_000913__290634__1__NC_000913__2413609__-1__0____151__151__1__0 max_left=64 max_left_minus=63 max_left_plus=64 max_min_left=64 max_min_left_minus=63 max_min_left_plus=64 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=150 max_right_minus=150 max_right_plus=144 neg_log10_pos_hash_p_value=17.8 new_junction_coverage=0.53 new_junction_read_count=238 polymorphism_frequency=4.770e-01 pos_hash_score=67 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.58 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=261 side_2_redundant=0 total_non_overlap_reads=118 JC 90 . NC_000913 291401 -1 NC_000913 1307993 1 0 alignment_overlap=0 coverage_minus=79 coverage_plus=92 flanking_left=151 flanking_right=151 frequency=5.059e-01 junction_possible_overlap_registers=149 key=NC_000913__291401__-1__NC_000913__1307993__1__0____151__151__1__0 max_left=150 max_left_minus=150 max_left_plus=126 max_min_left=74 max_min_left_minus=74 max_min_left_plus=73 max_min_right=75 max_min_right_minus=75 max_min_right_plus=75 max_pos_hash_score=300 max_right=150 max_right_minus=149 max_right_plus=150 neg_log10_pos_hash_p_value=6.9 new_junction_coverage=0.48 new_junction_read_count=215 polymorphism_frequency=5.059e-01 pos_hash_score=122 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.47 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=210 side_2_redundant=0 total_non_overlap_reads=171 JC 91 . NC_000913 291401 -1 NC_000913 1673343 -1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=2.670e-02 junction_possible_overlap_registers=149 key=NC_000913__291401__-1__NC_000913__1673343__-1__0____151__151__1__0 max_left=118 max_left_minus=50 max_left_plus=118 max_min_left=50 max_min_left_minus=50 max_min_left_plus=44 max_min_right=61 max_min_right_minus=0 max_min_right_plus=61 max_pos_hash_score=300 max_right=142 max_right_minus=142 max_right_plus=107 neg_log10_pos_hash_p_value=47.3 new_junction_coverage=0.02 new_junction_read_count=11 polymorphism_frequency=2.670e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.90 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=401 side_2_redundant=0 total_non_overlap_reads=5 JC 92 . NC_000913 291401 -1 NC_000913 2413601 1 0 alignment_overlap=0 coverage_minus=94 coverage_plus=87 flanking_left=151 flanking_right=151 frequency=4.205e-01 junction_possible_overlap_registers=149 key=NC_000913__291401__-1__NC_000913__2413601__1__0____151__151__1__0 max_left=150 max_left_minus=150 max_left_plus=142 max_min_left=75 max_min_left_minus=75 max_min_left_plus=73 max_min_right=75 max_min_right_minus=74 max_min_right_plus=75 max_pos_hash_score=300 max_right=149 max_right_minus=149 max_right_plus=147 neg_log10_pos_hash_p_value=7.2 new_junction_coverage=0.48 new_junction_read_count=217 polymorphism_frequency=4.205e-01 pos_hash_score=120 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.67 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=299 side_2_redundant=0 total_non_overlap_reads=181 JC 93 . NC_000913 291401 -1 NC_000913 4434629 1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.193e-02 junction_possible_overlap_registers=149 key=NC_000913__291401__-1__NC_000913__4434629__1__0____151__151__1__0 max_left=150 max_left_minus=150 max_left_plus=94 max_min_left=42 max_min_left_minus=42 max_min_left_plus=33 max_min_right=56 max_min_right_minus=1 max_min_right_plus=56 max_pos_hash_score=300 max_right=117 max_right_minus=109 max_right_plus=117 neg_log10_pos_hash_p_value=48.3 new_junction_coverage=0.01 new_junction_read_count=6 polymorphism_frequency=1.193e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=497 side_2_redundant=0 total_non_overlap_reads=5 JC 94 . NC_000913 291402 -1 NC_000913 2413602 1 0 alignment_overlap=2 coverage_minus=0 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=4.124e-01 junction_possible_overlap_registers=147 key=NC_000913__291404__-1__NC_000913__2413602__1__2____151__151__0__0 max_left=113 max_left_minus=0 max_left_plus=113 max_min_left=4 max_min_left_minus=0 max_min_left_plus=4 max_min_right=58 max_min_right_minus=0 max_min_right_plus=58 max_pos_hash_score=296 max_right=143 max_right_minus=0 max_right_plus=143 neg_log10_pos_hash_p_value=49.2 new_junction_coverage=0.47 new_junction_read_count=207 polymorphism_frequency=4.124e-01 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.67 side_2_overlap=2 side_2_possible_overlap_registers=149 side_2_read_count=299 side_2_redundant=0 total_non_overlap_reads=3 JC 95 . NC_000913 315229 1 NC_000913 1199872 -1 -2 alignment_overlap=-2 coverage_minus=2 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=2.338e-02 junction_possible_overlap_registers=147 key=NC_000913__315229__1__NC_000913__1199872__-1__-2__TC__151__151__0__0 max_left=59 max_left_minus=59 max_left_plus=56 max_min_left=59 max_min_left_minus=59 max_min_left_plus=56 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=296 max_right=143 max_right_minus=143 max_right_plus=129 neg_log10_pos_hash_p_value=48.0 new_junction_coverage=0.03 new_junction_read_count=12 polymorphism_frequency=2.338e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.14 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=508 side_2_redundant=0 total_non_overlap_reads=5 unique_read_sequence=TC JC 96 . NC_000913 687851 1 NC_000913 889537 -1 0 alignment_overlap=0 coverage_minus=112 coverage_plus=87 flanking_left=151 flanking_right=151 frequency=4.946e-01 junction_possible_overlap_registers=149 key=NC_000913__687851__1__NC_000913__889537__-1__0____151__151__1__0 max_left=147 max_left_minus=146 max_left_plus=147 max_min_left=75 max_min_left_minus=75 max_min_left_plus=72 max_min_right=74 max_min_right_minus=71 max_min_right_plus=74 max_pos_hash_score=300 max_right=149 max_right_minus=148 max_right_plus=149 neg_log10_pos_hash_p_value=4.9 new_junction_coverage=0.51 new_junction_read_count=230 polymorphism_frequency=4.946e-01 pos_hash_score=137 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.53 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=235 side_2_redundant=0 total_non_overlap_reads=199 JC 97 . NC_000913 689045 -1 NC_000913 889534 1 0 alignment_overlap=0 coverage_minus=95 coverage_plus=107 flanking_left=151 flanking_right=151 frequency=4.521e-01 junction_possible_overlap_registers=149 key=NC_000913__689045__-1__NC_000913__889534__1__0____151__151__1__0 max_left=149 max_left_minus=148 max_left_plus=149 max_min_left=74 max_min_left_minus=73 max_min_left_plus=74 max_min_right=75 max_min_right_minus=75 max_min_right_plus=71 max_pos_hash_score=300 max_right=150 max_right_minus=149 max_right_plus=150 neg_log10_pos_hash_p_value=3.7 new_junction_coverage=0.45 new_junction_read_count=203 polymorphism_frequency=4.521e-01 pos_hash_score=148 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.55 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=246 side_2_redundant=0 total_non_overlap_reads=202 JC 98 . NC_000913 696863 1 NC_000913 697134 -1 -12 alignment_overlap=-12 coverage_minus=42 coverage_plus=27 flanking_left=151 flanking_right=151 frequency=2.847e-01 junction_possible_overlap_registers=137 key=NC_000913__696863__1__NC_000913__697134__-1__-12__GAAGAAACAATC__151__151__0__0 max_left=137 max_left_minus=137 max_left_plus=134 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=60 max_min_right_minus=60 max_min_right_plus=58 max_pos_hash_score=276 max_right=60 max_right_minus=60 max_right_plus=58 neg_log10_pos_hash_p_value=20.0 new_junction_coverage=0.27 new_junction_read_count=112 polymorphism_frequency=2.847e-01 pos_hash_score=53 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.32 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=143 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=469 side_2_redundant=0 total_non_overlap_reads=69 unique_read_sequence=GAAGAAACAATC JC 99 . NC_000913 780554 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=27 coverage_plus=17 flanking_left=151 flanking_right=151 frequency=2.125e-01 junction_possible_overlap_registers=145 key=NC_000913__780554__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=65 max_left_minus=63 max_left_plus=65 max_min_left=65 max_min_left_minus=63 max_min_left_plus=65 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=292 max_right=140 max_right_minus=139 max_right_plus=140 neg_log10_pos_hash_p_value=27.5 new_junction_coverage=0.19 new_junction_read_count=83 polymorphism_frequency=2.125e-01 pos_hash_score=36 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=446 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.42 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=186 side_2_redundant=0 total_non_overlap_reads=44 unique_read_sequence=GAAG JC 100 . NC_000913 780554 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=16 coverage_plus=23 flanking_left=151 flanking_right=151 frequency=2.735e-01 junction_possible_overlap_registers=148 key=NC_000913__780554__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=63 max_left_minus=63 max_left_plus=58 max_min_left=63 max_min_left_minus=63 max_min_left_plus=58 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=298 max_right=134 max_right_minus=105 max_right_plus=134 neg_log10_pos_hash_p_value=29.7 new_junction_coverage=0.23 new_junction_read_count=103 polymorphism_frequency=2.735e-01 pos_hash_score=32 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=446 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.23 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=105 side_2_redundant=0 total_non_overlap_reads=39 unique_read_sequence=G JC 101 . NC_000913 781369 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=27 coverage_plus=18 flanking_left=151 flanking_right=151 frequency=2.885e-01 junction_possible_overlap_registers=145 key=NC_000913__781369__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=79 max_left_minus=63 max_left_plus=79 max_min_left=65 max_min_left_minus=63 max_min_left_plus=65 max_min_right=68 max_min_right_minus=0 max_min_right_plus=68 max_pos_hash_score=292 max_right=140 max_right_minus=139 max_right_plus=140 neg_log10_pos_hash_p_value=27.1 new_junction_coverage=0.23 new_junction_read_count=101 polymorphism_frequency=2.885e-01 pos_hash_score=37 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.73 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=326 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.42 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=186 side_2_redundant=0 total_non_overlap_reads=45 unique_read_sequence=GAAG JC 102 . NC_000913 781369 1 NC_000913 2521006 -1 -3 alignment_overlap=-3 coverage_minus=19 coverage_plus=10 flanking_left=151 flanking_right=151 frequency=2.955e-01 junction_possible_overlap_registers=146 key=NC_000913__781369__1__NC_000913__2521006__-1__-3__GAG__151__151__0__0 max_left=134 max_left_minus=134 max_left_plus=111 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=70 max_min_right_minus=67 max_min_right_plus=70 max_pos_hash_score=294 max_right=70 max_right_minus=67 max_right_plus=70 neg_log10_pos_hash_p_value=33.8 new_junction_coverage=0.24 new_junction_read_count=105 polymorphism_frequency=2.955e-01 pos_hash_score=23 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.73 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=325 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.42 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=186 side_2_redundant=0 total_non_overlap_reads=29 unique_read_sequence=GAG JC 103 . NC_000913 781369 1 NC_000913 2521128 -1 -1 alignment_overlap=-1 coverage_minus=21 coverage_plus=11 flanking_left=151 flanking_right=151 frequency=3.199e-01 junction_possible_overlap_registers=148 key=NC_000913__781369__1__NC_000913__2521128__-1__-1__G__151__151__0__0 max_left=140 max_left_minus=140 max_left_plus=111 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=72 max_min_right_minus=69 max_min_right_plus=72 max_pos_hash_score=298 max_right=72 max_right_minus=69 max_right_plus=72 neg_log10_pos_hash_p_value=32.6 new_junction_coverage=0.22 new_junction_read_count=100 polymorphism_frequency=3.199e-01 pos_hash_score=26 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.73 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=325 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.23 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=103 side_2_redundant=0 total_non_overlap_reads=32 unique_read_sequence=G JC 104 . NC_000913 781369 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=17 coverage_plus=24 flanking_left=151 flanking_right=151 frequency=3.687e-01 junction_possible_overlap_registers=148 key=NC_000913__781369__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=140 max_left_minus=140 max_left_plus=79 max_min_left=63 max_min_left_minus=63 max_min_left_plus=58 max_min_right=71 max_min_right_minus=1 max_min_right_plus=71 max_pos_hash_score=298 max_right=134 max_right_minus=105 max_right_plus=134 neg_log10_pos_hash_p_value=28.9 new_junction_coverage=0.28 new_junction_read_count=125 polymorphism_frequency=3.687e-01 pos_hash_score=34 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.73 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=326 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.23 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=105 side_2_redundant=0 total_non_overlap_reads=41 unique_read_sequence=G JC 105 . NC_000913 781446 -1 NC_000913 2521487 1 0 alignment_overlap=20 coverage_minus=36 coverage_plus=18 flanking_left=151 flanking_right=151 frequency=1.958e-01 junction_possible_overlap_registers=129 key=NC_000913__781446__-1__NC_000913__2521467__1__20____151__151__0__0 max_left=129 max_left_minus=129 max_left_plus=117 max_min_left=30 max_min_left_minus=30 max_min_left_plus=14 max_min_right=38 max_min_right_minus=38 max_min_right_plus=36 max_pos_hash_score=260 max_right=117 max_right_minus=101 max_right_plus=117 neg_log10_pos_hash_p_value=23.2 new_junction_coverage=0.19 new_junction_read_count=74 polymorphism_frequency=1.958e-01 pos_hash_score=40 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.72 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=320 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.85 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=331 side_2_redundant=0 total_non_overlap_reads=54 JC 106 . NC_000913 781577 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=28 coverage_plus=17 flanking_left=151 flanking_right=151 frequency=4.209e-01 junction_possible_overlap_registers=145 key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=87 max_left_minus=87 max_left_plus=65 max_min_left=65 max_min_left_minus=63 max_min_left_plus=65 max_min_right=57 max_min_right_minus=57 max_min_right_plus=0 max_pos_hash_score=292 max_right=140 max_right_minus=139 max_right_plus=140 neg_log10_pos_hash_p_value=27.1 new_junction_coverage=0.41 new_junction_read_count=180 polymorphism_frequency=4.209e-01 pos_hash_score=37 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.72 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=323 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.42 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=186 side_2_redundant=0 total_non_overlap_reads=45 unique_read_sequence=GAAG JC 107 . NC_000913 781577 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=17 coverage_plus=23 flanking_left=151 flanking_right=151 frequency=4.860e-01 junction_possible_overlap_registers=148 key=NC_000913__781577__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=87 max_left_minus=87 max_left_plus=58 max_min_left=63 max_min_left_minus=63 max_min_left_plus=58 max_min_right=60 max_min_right_minus=60 max_min_right_plus=0 max_pos_hash_score=298 max_right=134 max_right_minus=105 max_right_plus=134 neg_log10_pos_hash_p_value=29.3 new_junction_coverage=0.45 new_junction_read_count=201 polymorphism_frequency=4.860e-01 pos_hash_score=33 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.72 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=323 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.23 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=105 side_2_redundant=0 total_non_overlap_reads=40 unique_read_sequence=G JC 108 . NC_000913 889534 1 NC_000913 2067353 -1 0 alignment_overlap=3 coverage_minus=34 coverage_plus=32 flanking_left=151 flanking_right=151 frequency=4.522e-01 junction_possible_overlap_registers=146 key=NC_000913__889534__1__NC_000913__2067356__-1__3____151__151__0__0 max_left=147 max_left_minus=147 max_left_plus=146 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=53 max_min_right_minus=53 max_min_right_plus=50 max_pos_hash_score=294 max_right=53 max_right_minus=53 max_right_plus=50 neg_log10_pos_hash_p_value=21.8 new_junction_coverage=0.45 new_junction_read_count=199 polymorphism_frequency=4.522e-01 pos_hash_score=52 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.55 side_1_overlap=3 side_1_possible_overlap_registers=149 side_1_read_count=246 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=66 JC 109 . NC_000913 889537 -1 NC_000913 2066159 1 0 alignment_overlap=0 coverage_minus=10 coverage_plus=17 flanking_left=151 flanking_right=151 frequency=4.560e-01 junction_possible_overlap_registers=149 key=NC_000913__889537__-1__NC_000913__2066159__1__0____151__151__0__0 max_left=149 max_left_minus=149 max_left_plus=148 max_min_left=52 max_min_left_minus=43 max_min_left_plus=52 max_min_right=14 max_min_right_minus=13 max_min_right_plus=14 max_pos_hash_score=300 max_right=118 max_right_minus=118 max_right_plus=97 neg_log10_pos_hash_p_value=36.0 new_junction_coverage=0.44 new_junction_read_count=197 polymorphism_frequency=4.560e-01 pos_hash_score=20 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.53 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=235 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=27 JC 110 . NC_000913 1049778 1 NC_000913 1307993 1 0 alignment_overlap=2 coverage_minus=38 coverage_plus=28 flanking_left=151 flanking_right=151 frequency=4.986e-01 junction_possible_overlap_registers=147 key=NC_000913__1049776__1__NC_000913__1307993__1__2____151__151__0__0 max_left=117 max_left_minus=117 max_left_plus=80 max_min_left=49 max_min_left_minus=49 max_min_left_plus=49 max_min_right=69 max_min_right_minus=31 max_min_right_plus=69 max_pos_hash_score=296 max_right=148 max_right_minus=147 max_right_plus=148 neg_log10_pos_hash_p_value=23.7 new_junction_coverage=0.47 new_junction_read_count=206 polymorphism_frequency=4.986e-01 pos_hash_score=47 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.47 side_2_overlap=2 side_2_possible_overlap_registers=149 side_2_read_count=210 side_2_redundant=0 total_non_overlap_reads=66 JC 111 . NC_000913 1049778 1 NC_000913 2413601 1 0 alignment_overlap=1 coverage_minus=45 coverage_plus=31 flanking_left=151 flanking_right=151 frequency=4.130e-01 junction_possible_overlap_registers=148 key=NC_000913__1049777__1__NC_000913__2413601__1__1____151__151__0__0 max_left=49 max_left_minus=49 max_left_plus=49 max_min_left=49 max_min_left_minus=49 max_min_left_plus=49 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=298 max_right=148 max_right_minus=148 max_right_plus=146 neg_log10_pos_hash_p_value=23.8 new_junction_coverage=0.47 new_junction_read_count=209 polymorphism_frequency=4.130e-01 pos_hash_score=47 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.67 side_2_overlap=1 side_2_possible_overlap_registers=149 side_2_read_count=299 side_2_redundant=0 total_non_overlap_reads=76 JC 112 . NC_000913 1050545 -1 NC_000913 1308001 -1 0 alignment_overlap=0 coverage_minus=85 coverage_plus=85 flanking_left=151 flanking_right=151 frequency=4.591e-01 junction_possible_overlap_registers=149 key=NC_000913__1050545__-1__NC_000913__1308001__-1__0____151__151__0__0 max_left=136 max_left_minus=136 max_left_plus=135 max_min_left=75 max_min_left_minus=75 max_min_left_plus=74 max_min_right=74 max_min_right_minus=73 max_min_right_plus=74 max_pos_hash_score=300 max_right=149 max_right_minus=148 max_right_plus=149 neg_log10_pos_hash_p_value=6.4 new_junction_coverage=0.41 new_junction_read_count=185 polymorphism_frequency=4.591e-01 pos_hash_score=125 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.49 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=218 side_2_redundant=0 total_non_overlap_reads=170 JC 113 . NC_000913 1050545 -1 NC_000913 1673336 1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=1.496e-02 junction_possible_overlap_registers=149 key=NC_000913__1050545__-1__NC_000913__1673336__1__0____151__151__0__0 max_left=130 max_left_minus=75 max_left_plus=130 max_min_left=75 max_min_left_minus=75 max_min_left_plus=59 max_min_right=20 max_min_right_minus=0 max_min_right_plus=20 max_pos_hash_score=300 max_right=149 max_right_minus=149 max_right_plus=103 neg_log10_pos_hash_p_value=47.3 new_junction_coverage=0.01 new_junction_read_count=6 polymorphism_frequency=1.496e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=395 side_2_redundant=0 total_non_overlap_reads=6 JC 114 . NC_000913 1050545 -1 NC_000913 2413609 -1 0 alignment_overlap=0 coverage_minus=132 coverage_plus=89 flanking_left=151 flanking_right=151 frequency=4.821e-01 junction_possible_overlap_registers=149 key=NC_000913__1050545__-1__NC_000913__2413609__-1__0____151__151__0__0 max_left=134 max_left_minus=134 max_left_plus=133 max_min_left=75 max_min_left_minus=75 max_min_left_plus=73 max_min_right=75 max_min_right_minus=74 max_min_right_plus=75 max_pos_hash_score=300 max_right=150 max_right_minus=150 max_right_plus=144 neg_log10_pos_hash_p_value=4.3 new_junction_coverage=0.54 new_junction_read_count=243 polymorphism_frequency=4.821e-01 pos_hash_score=142 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.58 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=261 side_2_redundant=0 total_non_overlap_reads=221 JC 115 . NC_000913 1095502 -1 NC_000913 1199871 -1 0 alignment_overlap=1 coverage_minus=2 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=9.804e-03 junction_possible_overlap_registers=148 key=NC_000913__1095502__-1__NC_000913__1199872__-1__1____151__151__1__0 max_left=61 max_left_minus=61 max_left_plus=58 max_min_left=61 max_min_left_minus=61 max_min_left_plus=58 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=298 max_right=142 max_right_minus=142 max_right_plus=128 neg_log10_pos_hash_p_value=48.2 new_junction_coverage=0.01 new_junction_read_count=5 polymorphism_frequency=9.804e-03 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.14 side_2_overlap=0 side_2_possible_overlap_registers=148 side_2_read_count=505 side_2_redundant=0 total_non_overlap_reads=5 JC 116 . NC_000913 1207790 1 NC_000913 1209619 1 0 alignment_overlap=16 coverage_minus=132 coverage_plus=163 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=133 key=NC_000913__1207790__1__NC_000913__1209603__1__16____151__151__0__0 max_left=134 max_left_minus=133 max_left_plus=134 max_min_left=66 max_min_left_minus=66 max_min_left_plus=66 max_min_right=65 max_min_right_minus=64 max_min_right_plus=65 max_pos_hash_score=268 max_right=132 max_right_minus=128 max_right_plus=132 neg_log10_pos_hash_p_value=0.6 new_junction_coverage=0.75 new_junction_read_count=298 polymorphism_frequency=8.487e-01 pos_hash_score=171 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.10 side_1_overlap=16 side_1_possible_overlap_registers=149 side_1_read_count=44 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.17 side_2_overlap=0 side_2_possible_overlap_registers=133 side_2_read_count=67 side_2_redundant=0 total_non_overlap_reads=295 JC 117 . NC_000913 1207805 -1 NC_000913 1209602 -1 0 alignment_overlap=16 coverage_minus=143 coverage_plus=160 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=133 key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____151__151__0__0 max_left=134 max_left_minus=133 max_left_plus=134 max_min_left=66 max_min_left_minus=66 max_min_left_plus=66 max_min_right=66 max_min_right_minus=65 max_min_right_plus=66 max_pos_hash_score=268 max_right=131 max_right_minus=131 max_right_plus=131 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.76 new_junction_read_count=304 polymorphism_frequency=8.491e-01 pos_hash_score=179 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.10 side_1_overlap=16 side_1_possible_overlap_registers=149 side_1_read_count=46 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.17 side_2_overlap=0 side_2_possible_overlap_registers=133 side_2_read_count=67 side_2_redundant=0 total_non_overlap_reads=303 JC 118 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=25 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=2.188e-01 junction_possible_overlap_registers=129 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____151__151__0__0 max_left=129 max_left_minus=129 max_left_plus=115 max_min_left=63 max_min_left_minus=62 max_min_left_plus=63 max_min_right=62 max_min_right_minus=62 max_min_right_plus=20 max_pos_hash_score=260 max_right=118 max_right_minus=118 max_right_plus=67 neg_log10_pos_hash_p_value=29.4 new_junction_coverage=0.16 new_junction_read_count=63 polymorphism_frequency=2.188e-01 pos_hash_score=26 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.40 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=179 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=295 side_2_redundant=0 total_non_overlap_reads=28 JC 119 . NC_000913 1287084 -1 NC_000913 4175537 -1 0 alignment_overlap=19 coverage_minus=9 coverage_plus=0 flanking_left=151 flanking_right=151 frequency=1.041e-01 junction_possible_overlap_registers=130 key=NC_000913__1287084__-1__NC_000913__4175556__-1__19____151__151__0__0 max_left=130 max_left_minus=130 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=14 max_min_right_minus=14 max_min_right_plus=0 max_pos_hash_score=262 max_right=14 max_right_minus=14 max_right_plus=0 neg_log10_pos_hash_p_value=41.4 new_junction_coverage=0.09 new_junction_read_count=35 polymorphism_frequency=1.041e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.40 side_1_overlap=19 side_1_possible_overlap_registers=149 side_1_read_count=179 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.14 side_2_overlap=0 side_2_possible_overlap_registers=130 side_2_read_count=446 side_2_redundant=0 total_non_overlap_reads=9 JC 120 . NC_000913 1287085 -1 NC_000913 1287558 1 0 alignment_overlap=0 coverage_minus=8 coverage_plus=0 flanking_left=151 flanking_right=151 frequency=1.296e-01 junction_possible_overlap_registers=149 key=NC_000913__1287085__-1__NC_000913__1287558__1__0____151__151__0__0 max_left=129 max_left_minus=129 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=70 max_min_right_minus=70 max_min_right_plus=0 max_pos_hash_score=300 max_right=70 max_right_minus=70 max_right_plus=0 neg_log10_pos_hash_p_value=44.4 new_junction_coverage=0.09 new_junction_read_count=39 polymorphism_frequency=1.296e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.40 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=180 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.77 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=344 side_2_redundant=0 total_non_overlap_reads=8 JC 121 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=254 coverage_plus=231 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=145 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____151__151__0__0 max_left=145 max_left_minus=145 max_left_plus=143 max_min_left=72 max_min_left_minus=72 max_min_left_plus=72 max_min_right=73 max_min_right_minus=73 max_min_right_plus=73 max_pos_hash_score=292 max_right=145 max_right_minus=145 max_right_plus=145 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.12 new_junction_read_count=489 polymorphism_frequency=1.000e+00 pos_hash_score=236 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=145 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=485 JC 122 . NC_000913 1307993 1 NC_000913 4518472 1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=4.615e-01 junction_possible_overlap_registers=149 key=NC_000913__1307993__1__NC_000913__4518472__1__0____151__151__0__0 max_left=150 max_left_minus=150 max_left_plus=149 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=3 max_min_right_minus=3 max_min_right_plus=3 max_pos_hash_score=300 max_right=3 max_right_minus=3 max_right_plus=3 neg_log10_pos_hash_p_value=48.3 new_junction_coverage=0.40 new_junction_read_count=180 polymorphism_frequency=4.615e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.47 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=210 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=4 JC 123 . NC_000913 1308001 -1 NC_000913 1978503 1 0 alignment_overlap=0 coverage_minus=91 coverage_plus=93 flanking_left=151 flanking_right=151 frequency=4.871e-01 junction_possible_overlap_registers=149 key=NC_000913__1308001__-1__NC_000913__1978503__1__0____151__151__0__1 max_left=149 max_left_minus=149 max_left_plus=148 max_min_left=74 max_min_left_minus=74 max_min_left_plus=73 max_min_right=75 max_min_right_minus=74 max_min_right_plus=75 max_pos_hash_score=300 max_right=149 max_right_minus=148 max_right_plus=149 neg_log10_pos_hash_p_value=4.8 new_junction_coverage=0.46 new_junction_read_count=207 polymorphism_frequency=4.871e-01 pos_hash_score=138 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.49 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=218 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=184 JC 124 . NC_000913 1308001 -1 NC_000913 1978504 1 -1 alignment_overlap=-1 coverage_minus=0 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=4.539e-01 junction_possible_overlap_registers=148 key=NC_000913__1308001__-1__NC_000913__1978504__1__-1__T__151__151__0__1 max_left=79 max_left_minus=0 max_left_plus=79 max_min_left=45 max_min_left_minus=0 max_min_left_plus=45 max_min_right=75 max_min_right_minus=0 max_min_right_plus=75 max_pos_hash_score=298 max_right=105 max_right_minus=0 max_right_plus=105 neg_log10_pos_hash_p_value=49.4 new_junction_coverage=0.40 new_junction_read_count=180 polymorphism_frequency=4.539e-01 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.49 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=218 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 unique_read_sequence=T JC 125 . NC_000913 1308001 -1 NC_000913 4519239 -1 0 alignment_overlap=0 coverage_minus=12 coverage_plus=14 flanking_left=151 flanking_right=151 frequency=4.367e-01 junction_possible_overlap_registers=149 key=NC_000913__1308001__-1__NC_000913__4519239__-1__0____151__151__0__0 max_left=149 max_left_minus=149 max_left_plus=148 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=17 max_min_right_minus=17 max_min_right_plus=17 max_pos_hash_score=300 max_right=17 max_right_minus=17 max_right_plus=17 neg_log10_pos_hash_p_value=37.2 new_junction_coverage=0.38 new_junction_read_count=169 polymorphism_frequency=4.367e-01 pos_hash_score=18 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.49 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=218 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=26 JC 126 . NC_000913 1399593 -1 NC_000913 2290113 -1 0 alignment_overlap=1 coverage_minus=3 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.799e-01 junction_possible_overlap_registers=148 key=NC_000913__1399594__-1__NC_000913__2290113__-1__1____151__151__0__1 max_left=127 max_left_minus=94 max_left_plus=127 max_min_left=46 max_min_left_minus=46 max_min_left_plus=38 max_min_right=55 max_min_right_minus=55 max_min_right_plus=23 max_pos_hash_score=298 max_right=111 max_right_minus=111 max_right_plus=111 neg_log10_pos_hash_p_value=47.1 new_junction_coverage=0.21 new_junction_read_count=95 polymorphism_frequency=1.799e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.97 side_1_overlap=0 side_1_possible_overlap_registers=148 side_1_read_count=433 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=5 JC 127 . NC_000913 1673343 -1 NC_000913 1979270 -1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=2.670e-02 junction_possible_overlap_registers=149 key=NC_000913__1673343__-1__NC_000913__1979270__-1__0____151__151__0__1 max_left=142 max_left_minus=107 max_left_plus=142 max_min_left=61 max_min_left_minus=61 max_min_left_plus=9 max_min_right=50 max_min_right_minus=44 max_min_right_plus=50 max_pos_hash_score=300 max_right=142 max_right_minus=118 max_right_plus=142 neg_log10_pos_hash_p_value=46.3 new_junction_coverage=0.02 new_junction_read_count=11 polymorphism_frequency=2.670e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.90 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=401 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=6 JC 128 . NC_000913 1673556 -1 NC_000913 1673677 1 0 alignment_overlap=2 coverage_minus=245 coverage_plus=206 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=147 key=NC_000913__1673556__-1__NC_000913__1673675__1__2____151__151__0__0 max_left=148 max_left_minus=148 max_left_plus=148 max_min_left=73 max_min_left_minus=73 max_min_left_plus=73 max_min_right=74 max_min_right_minus=74 max_min_right_plus=73 max_pos_hash_score=296 max_right=148 max_right_minus=146 max_right_plus=148 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.03 new_junction_read_count=454 polymorphism_frequency=9.946e-01 pos_hash_score=224 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=2 side_1_possible_overlap_registers=149 side_1_read_count=3 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=147 side_2_read_count=2 side_2_redundant=0 total_non_overlap_reads=451 JC 129 . NC_000913 1677802 1 NC_000913 4101883 -1 0 alignment_overlap=8 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=8.195e-03 junction_possible_overlap_registers=141 key=NC_000913__1677802__1__NC_000913__4101891__-1__8____151__151__0__0 max_left=91 max_left_minus=91 max_left_plus=91 max_min_left=2 max_min_left_minus=0 max_min_left_plus=2 max_min_right=46 max_min_right_minus=46 max_min_right_plus=46 max_pos_hash_score=284 max_right=139 max_right_minus=46 max_right_plus=139 neg_log10_pos_hash_p_value=48.3 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=8.195e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.87 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=388 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.85 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=359 side_2_redundant=0 total_non_overlap_reads=3 JC 130 . NC_000913 1963116 1 NC_000913 3079993 -1 0 alignment_overlap=7 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=7.475e-03 junction_possible_overlap_registers=142 key=NC_000913__1963116__1__NC_000913__3080000__-1__7____151__151__0__0 max_left=140 max_left_minus=140 max_left_plus=70 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=56 max_min_right_minus=56 max_min_right_plus=56 max_pos_hash_score=286 max_right=56 max_right_minus=56 max_right_plus=56 neg_log10_pos_hash_p_value=48.5 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=7.475e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.92 side_1_overlap=7 side_1_possible_overlap_registers=149 side_1_read_count=412 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=142 side_2_read_count=404 side_2_redundant=0 total_non_overlap_reads=3 JC 131 . NC_000913 1978502 -1 NC_000913 1979279 1 0 alignment_overlap=8 coverage_minus=242 coverage_plus=196 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=141 key=NC_000913__1978502__-1__NC_000913__1979271__1__8____151__151__0__0 max_left=142 max_left_minus=142 max_left_plus=142 max_min_left=71 max_min_left_minus=70 max_min_left_plus=71 max_min_right=71 max_min_right_minus=69 max_min_right_plus=71 max_pos_hash_score=284 max_right=142 max_right_minus=141 max_right_plus=142 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.04 new_junction_read_count=441 polymorphism_frequency=1.000e+00 pos_hash_score=217 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=438 JC 132 . NC_000913 1978503 1 NC_000913 2413609 -1 0 alignment_overlap=0 coverage_minus=141 coverage_plus=97 flanking_left=151 flanking_right=151 frequency=4.990e-01 junction_possible_overlap_registers=149 key=NC_000913__1978503__1__NC_000913__2413609__-1__0____151__151__1__0 max_left=149 max_left_minus=149 max_left_plus=145 max_min_left=75 max_min_left_minus=75 max_min_left_plus=73 max_min_right=75 max_min_right_minus=74 max_min_right_plus=75 max_pos_hash_score=300 max_right=150 max_right_minus=150 max_right_plus=144 neg_log10_pos_hash_p_value=3.0 new_junction_coverage=0.58 new_junction_read_count=260 polymorphism_frequency=4.990e-01 pos_hash_score=155 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.58 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=261 side_2_redundant=0 total_non_overlap_reads=238 JC 133 . NC_000913 2016824 -1 NC_000913 4151354 1 0 alignment_overlap=3 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=7.077e-03 junction_possible_overlap_registers=146 key=NC_000913__2016824__-1__NC_000913__4151351__1__3____151__151__0__0 max_left=60 max_left_minus=60 max_left_plus=60 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=22 max_min_right_minus=22 max_min_right_plus=22 max_pos_hash_score=294 max_right=140 max_right_minus=22 max_right_plus=140 neg_log10_pos_hash_p_value=49.1 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=7.077e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.90 side_1_overlap=3 side_1_possible_overlap_registers=149 side_1_read_count=405 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=146 side_2_read_count=445 side_2_redundant=0 total_non_overlap_reads=3 JC 134 . NC_000913 2304390 1 NC_000913 2305065 -1 -2 alignment_overlap=-2 coverage_minus=3 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=NA junction_possible_overlap_registers=147 key=NC_000913__2304390__1__NC_000913__2305065__-1__-2__GC__151__151__0__0 max_left=144 max_left_minus=144 max_left_plus=6 max_min_left=6 max_min_left_minus=0 max_min_left_plus=6 max_min_right=40 max_min_right_minus=40 max_min_right_plus=0 max_pos_hash_score=296 max_right=140 max_right_minus=40 max_right_plus=140 neg_log10_pos_hash_p_value=48.0 new_junction_coverage=0.02 new_junction_read_count=9 polymorphism_frequency=NA pos_hash_score=4 prediction=unknown reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=GC JC 135 . NC_000913 2357873 -1 NC_000913 2357886 1 0 alignment_overlap=0 coverage_minus=23 coverage_plus=9 flanking_left=151 flanking_right=151 frequency=1.116e-01 junction_possible_overlap_registers=149 key=NC_000913__2357873__-1__NC_000913__2357886__1__0____151__151__0__0 max_left=62 max_left_minus=62 max_left_plus=46 max_min_left=62 max_min_left_minus=62 max_min_left_plus=46 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=149 max_right_minus=149 max_right_plus=138 neg_log10_pos_hash_p_value=33.8 new_junction_coverage=0.08 new_junction_read_count=35 polymorphism_frequency=1.116e-01 pos_hash_score=24 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.60 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=267 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.65 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=290 side_2_redundant=0 total_non_overlap_reads=32 JC 136 . NC_000913 2364638 -1 NC_000913 3036172 1 0 alignment_overlap=8 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=6.623e-03 junction_possible_overlap_registers=141 key=NC_000913__2364638__-1__NC_000913__3036164__1__8____151__151__0__0 max_left=93 max_left_minus=93 max_left_plus=93 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=34 max_min_right_minus=34 max_min_right_plus=34 max_pos_hash_score=284 max_right=142 max_right_minus=34 max_right_plus=142 neg_log10_pos_hash_p_value=48.3 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=6.623e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=448 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.12 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=476 side_2_redundant=0 total_non_overlap_reads=3 JC 137 . NC_000913 2413601 1 NC_000913 3583428 1 0 alignment_overlap=0 coverage_minus=105 coverage_plus=106 flanking_left=151 flanking_right=151 frequency=4.534e-01 junction_possible_overlap_registers=149 key=NC_000913__2413601__1__NC_000913__3583428__1__0____151__151__0__1 max_left=149 max_left_minus=147 max_left_plus=149 max_min_left=75 max_min_left_minus=75 max_min_left_plus=74 max_min_right=75 max_min_right_minus=73 max_min_right_plus=75 max_pos_hash_score=300 max_right=146 max_right_minus=146 max_right_plus=144 neg_log10_pos_hash_p_value=4.9 new_junction_coverage=0.55 new_junction_read_count=248 polymorphism_frequency=4.534e-01 pos_hash_score=137 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.67 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=299 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=211 JC 138 . NC_000913 2413601 1 NC_000913 4518472 1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=3.860e-01 junction_possible_overlap_registers=149 key=NC_000913__2413601__1__NC_000913__4518472__1__0____151__151__0__0 max_left=149 max_left_minus=147 max_left_plus=149 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=3 max_min_right_minus=3 max_min_right_plus=2 max_pos_hash_score=300 max_right=3 max_right_minus=3 max_right_plus=2 neg_log10_pos_hash_p_value=49.5 new_junction_coverage=0.42 new_junction_read_count=188 polymorphism_frequency=3.860e-01 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.67 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=299 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=3 JC 139 . NC_000913 2413609 -1 NC_000913 4519239 -1 0 alignment_overlap=0 coverage_minus=9 coverage_plus=30 flanking_left=151 flanking_right=151 frequency=4.574e-01 junction_possible_overlap_registers=149 key=NC_000913__2413609__-1__NC_000913__4519239__-1__0____151__151__0__0 max_left=150 max_left_minus=144 max_left_plus=150 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=17 max_min_right_minus=17 max_min_right_plus=16 max_pos_hash_score=300 max_right=17 max_right_minus=17 max_right_plus=16 neg_log10_pos_hash_p_value=36.6 new_junction_coverage=0.49 new_junction_read_count=220 polymorphism_frequency=4.574e-01 pos_hash_score=19 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.58 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=261 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=39 JC 140 . NC_000913 2558698 -1 NC_000913 2565489 1 0 alignment_overlap=8 coverage_minus=4 coverage_plus=0 flanking_left=151 flanking_right=151 frequency=9.073e-03 junction_possible_overlap_registers=141 key=NC_000913__2558698__-1__NC_000913__2565481__1__8____151__151__0__0 max_left=105 max_left_minus=105 max_left_plus=0 max_min_left=71 max_min_left_minus=71 max_min_left_plus=0 max_min_right=42 max_min_right_minus=42 max_min_right_plus=0 max_pos_hash_score=284 max_right=104 max_right_minus=104 max_right_plus=0 neg_log10_pos_hash_p_value=47.1 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=9.073e-03 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.09 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=489 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.97 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=411 side_2_redundant=0 total_non_overlap_reads=4 JC 141 . NC_000913 2817670 1 NC_000913 2818216 -1 0 alignment_overlap=0 coverage_minus=0 coverage_plus=5 flanking_left=151 flanking_right=151 frequency=2.761e-02 junction_possible_overlap_registers=149 key=NC_000913__2817670__1__NC_000913__2818216__-1__0____151__151__0__0 max_left=1 max_left_minus=0 max_left_plus=1 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=149 max_right_minus=0 max_right_plus=149 neg_log10_pos_hash_p_value=48.3 new_junction_coverage=0.02 new_junction_read_count=9 polymorphism_frequency=2.761e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.09 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=487 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.33 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=147 side_2_redundant=0 total_non_overlap_reads=5 JC 142 . NC_000913 2817783 1 NC_000913 2817922 -1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=1.441e-02 junction_possible_overlap_registers=129 key=NC_000913__2817783__1__NC_000913__2817942__-1__20____151__151__0__0 max_left=63 max_left_minus=63 max_left_plus=12 max_min_left=12 max_min_left_minus=2 max_min_left_plus=12 max_min_right=59 max_min_right_minus=59 max_min_right_plus=0 max_pos_hash_score=260 max_right=60 max_right_minus=59 max_right_plus=60 neg_log10_pos_hash_p_value=46.4 new_junction_coverage=0.01 new_junction_read_count=5 polymorphism_frequency=1.441e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.02 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=456 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.75 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=289 side_2_redundant=0 total_non_overlap_reads=3 JC 143 . NC_000913 2817942 -1 NC_000913 2818078 1 0 alignment_overlap=20 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.635e-02 junction_possible_overlap_registers=129 key=NC_000913__2817942__-1__NC_000913__2818058__1__20____151__151__0__0 max_left=60 max_left_minus=60 max_left_plus=59 max_min_left=59 max_min_left_minus=0 max_min_left_plus=59 max_min_right=12 max_min_right_minus=12 max_min_right_plus=2 max_pos_hash_score=260 max_right=63 max_right_minus=12 max_right_plus=63 neg_log10_pos_hash_p_value=46.4 new_junction_coverage=0.01 new_junction_read_count=5 polymorphism_frequency=1.635e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.75 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=337 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.80 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=310 side_2_redundant=0 total_non_overlap_reads=3 JC 144 . NC_000913 2817942 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=6 coverage_plus=5 flanking_left=151 flanking_right=151 frequency=5.400e-02 junction_possible_overlap_registers=129 key=NC_000913__2817942__-1__NC_000913__2818472__1__20____151__151__0__0 max_left=60 max_left_minus=60 max_left_plus=47 max_min_left=49 max_min_left_minus=49 max_min_left_plus=45 max_min_right=12 max_min_right_minus=12 max_min_right_plus=2 max_pos_hash_score=260 max_right=112 max_right_minus=111 max_right_plus=112 neg_log10_pos_hash_p_value=38.7 new_junction_coverage=0.05 new_junction_read_count=20 polymorphism_frequency=5.400e-02 pos_hash_score=11 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.75 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=337 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.06 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=409 side_2_redundant=0 total_non_overlap_reads=11 JC 145 . NC_000913 2818357 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=5 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=3.774e-02 junction_possible_overlap_registers=129 key=NC_000913__2818357__-1__NC_000913__2818472__1__20____151__151__0__0 max_left=26 max_left_minus=26 max_left_plus=13 max_min_left=26 max_min_left_minus=26 max_min_left_plus=13 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=260 max_right=119 max_right_minus=119 max_right_plus=112 neg_log10_pos_hash_p_value=43.1 new_junction_coverage=0.04 new_junction_read_count=15 polymorphism_frequency=3.774e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.92 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=411 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.06 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=409 side_2_redundant=0 total_non_overlap_reads=8 JC 146 . NC_000913 2921202 1 NC_000913 3585517 1 0 alignment_overlap=7 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=7.120e-03 junction_possible_overlap_registers=142 key=NC_000913__2921202__1__NC_000913__3585510__1__7____151__151__0__0 max_left=142 max_left_minus=142 max_left_plus=92 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=51 max_min_right_minus=38 max_min_right_plus=51 max_pos_hash_score=286 max_right=51 max_right_minus=38 max_right_plus=51 neg_log10_pos_hash_p_value=48.5 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=7.120e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.87 side_1_overlap=7 side_1_possible_overlap_registers=149 side_1_read_count=389 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.09 side_2_overlap=0 side_2_possible_overlap_registers=142 side_2_read_count=466 side_2_redundant=0 total_non_overlap_reads=3 JC 147 . NC_000913 3218909 -1 NC_000913 3660153 -1 0 alignment_overlap=9 coverage_minus=3 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.103e-02 junction_possible_overlap_registers=140 key=NC_000913__3218909__-1__NC_000913__3660162__-1__9____151__151__0__0 max_left=141 max_left_minus=141 max_left_plus=70 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=26 max_min_right_minus=26 max_min_right_plus=26 max_pos_hash_score=282 max_right=26 max_right_minus=26 max_right_plus=26 neg_log10_pos_hash_p_value=48.2 new_junction_coverage=0.01 new_junction_read_count=5 polymorphism_frequency=1.103e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.08 side_1_overlap=9 side_1_possible_overlap_registers=149 side_1_read_count=483 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=140 side_2_read_count=443 side_2_redundant=0 total_non_overlap_reads=5 JC 148 . NC_000913 3395691 -1 NC_000913 3395697 1 0 alignment_overlap=1 coverage_minus=118 coverage_plus=102 flanking_left=151 flanking_right=151 frequency=4.624e-01 junction_possible_overlap_registers=148 key=NC_000913__3395691__-1__NC_000913__3395696__1__1____151__151__0__0 max_left=147 max_left_minus=142 max_left_plus=147 max_min_left=74 max_min_left_minus=74 max_min_left_plus=72 max_min_right=75 max_min_right_minus=75 max_min_right_plus=73 max_pos_hash_score=298 max_right=149 max_right_minus=149 max_right_plus=146 neg_log10_pos_hash_p_value=3.5 new_junction_coverage=0.50 new_junction_read_count=222 polymorphism_frequency=4.624e-01 pos_hash_score=149 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.57 side_1_overlap=1 side_1_possible_overlap_registers=149 side_1_read_count=255 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.59 side_2_overlap=0 side_2_possible_overlap_registers=148 side_2_read_count=263 side_2_redundant=0 total_non_overlap_reads=220 JC 149 . NC_000913 3582614 -1 NC_000913 3653230 -1 0 alignment_overlap=0 coverage_minus=7 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=4.770e-02 junction_possible_overlap_registers=149 key=NC_000913__3582614__-1__NC_000913__3653230__-1__0____151__151__0__1 max_left=128 max_left_minus=128 max_left_plus=2 max_min_left=50 max_min_left_minus=50 max_min_left_plus=2 max_min_right=63 max_min_right_minus=63 max_min_right_plus=0 max_pos_hash_score=300 max_right=149 max_right_minus=149 max_right_plus=148 neg_log10_pos_hash_p_value=45.3 new_junction_coverage=0.06 new_junction_read_count=27 polymorphism_frequency=4.770e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.20 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=539 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=8 JC 150 . NC_000913 3583428 1 NC_000913 4434629 1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=6.403e-02 junction_possible_overlap_registers=149 key=NC_000913__3583428__1__NC_000913__4434629__1__0____151__151__1__0 max_left=136 max_left_minus=136 max_left_plus=94 max_min_left=42 max_min_left_minus=42 max_min_left_plus=33 max_min_right=56 max_min_right_minus=14 max_min_right_plus=56 max_pos_hash_score=300 max_right=117 max_right_minus=109 max_right_plus=117 neg_log10_pos_hash_p_value=48.3 new_junction_coverage=0.08 new_junction_read_count=34 polymorphism_frequency=6.403e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=497 side_2_redundant=0 total_non_overlap_reads=4 JC 151 . NC_000913 3583428 1 NC_000913 4542049 -1 0 alignment_overlap=1 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=7.797e-03 junction_possible_overlap_registers=148 key=NC_000913__3583428__1__NC_000913__4542050__-1__1____151__151__1__0 max_left=131 max_left_minus=43 max_left_plus=131 max_min_left=43 max_min_left_minus=43 max_min_left_plus=0 max_min_right=74 max_min_right_minus=0 max_min_right_plus=74 max_pos_hash_score=298 max_right=107 max_right_minus=107 max_right_plus=74 neg_log10_pos_hash_p_value=49.4 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=7.797e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.15 side_2_overlap=0 side_2_possible_overlap_registers=148 side_2_read_count=509 side_2_redundant=0 total_non_overlap_reads=3 JC 152 . NC_000913 3865904 1 NC_000913 4453869 1 0 alignment_overlap=9 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=6.773e-03 junction_possible_overlap_registers=140 key=NC_000913__3865904__1__NC_000913__4453860__1__9____151__151__0__0 max_left=63 max_left_minus=63 max_left_plus=53 max_min_left=63 max_min_left_minus=63 max_min_left_plus=53 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=282 max_right=141 max_right_minus=79 max_right_plus=141 neg_log10_pos_hash_p_value=48.2 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=6.773e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.97 side_1_overlap=9 side_1_possible_overlap_registers=149 side_1_read_count=432 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=140 side_2_read_count=474 side_2_redundant=0 total_non_overlap_reads=3 JC 153 . NC_000913 4295832 1 NC_000913 4296394 -1 0 alignment_overlap=39 coverage_minus=3 coverage_plus=0 flanking_left=151 flanking_right=151 frequency=NA junction_possible_overlap_registers=110 key=NC_000913__4295832__1__NC_000913__4296433__-1__39____151__151__0__0 max_left=100 max_left_minus=100 max_left_plus=0 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=51 max_min_right_minus=51 max_min_right_plus=0 max_pos_hash_score=222 max_right=51 max_right_minus=51 max_right_plus=0 neg_log10_pos_hash_p_value=42.9 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=NA pos_hash_score=3 prediction=unknown reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=39 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=3 JC 154 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=12 coverage_plus=6 flanking_left=151 flanking_right=151 frequency=3.411e-02 junction_possible_overlap_registers=140 key=NC_000913__4542682__1__NC_000913__4542987__1__9____151__151__0__0 max_left=128 max_left_minus=128 max_left_plus=80 max_min_left=56 max_min_left_minus=56 max_min_left_plus=52 max_min_right=66 max_min_right_minus=66 max_min_right_plus=62 max_pos_hash_score=282 max_right=137 max_right_minus=133 max_right_plus=137 neg_log10_pos_hash_p_value=36.4 new_junction_coverage=0.04 new_junction_read_count=18 polymorphism_frequency=3.411e-02 pos_hash_score=17 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.17 side_1_overlap=9 side_1_possible_overlap_registers=149 side_1_read_count=525 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.25 side_2_overlap=0 side_2_possible_overlap_registers=140 side_2_read_count=526 side_2_redundant=0 total_non_overlap_reads=18 JC 155 . 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