#=GENOME_DIFF 1.0 #=AUTHOR breseq 0.27.1 revision 87c22d663cc3 #=CREATED 15:53:23 21 Apr 2016 #=COMMAND breseq -j 8 -r NC_000913_3.gb -o ALE-IL32 ALE-IL32_S40_L002_R2_001.fastq.gz ALE-IL32_S40_L003_R1_001.fastq.gz ALE-IL32_S40_L003_R2_001.fastq.gz ALE-IL32_S40_L001_R2_001.fastq.gz ALE-IL32_S40_L004_R1_001.fastq.gz ALE-IL32_S40_L004_R2_001.fastq.gz ALE-IL32_S40_L001_R1_001.fastq.gz ALE-IL32_S40_L002_R1_001.fastq.gz #=REFSEQ NC_000913_3.gb #=READSEQ ALE-IL32_S40_L002_R2_001.fastq.gz #=READSEQ ALE-IL32_S40_L003_R1_001.fastq.gz #=READSEQ ALE-IL32_S40_L003_R2_001.fastq.gz #=READSEQ ALE-IL32_S40_L001_R2_001.fastq.gz #=READSEQ ALE-IL32_S40_L004_R1_001.fastq.gz #=READSEQ ALE-IL32_S40_L004_R2_001.fastq.gz #=READSEQ ALE-IL32_S40_L001_R1_001.fastq.gz #=READSEQ ALE-IL32_S40_L002_R1_001.fastq.gz DEL 1 67,72 NC_000913 257908 776 DEL 2 68,98 NC_000913 1673557 120 DEL 3 37,38 NC_000913 2173363 2 INS 4 54 NC_000913 3560455 G INS 5 61,62 NC_000913 4296381 GC RA 6 . NC_000913 107554 0 G T bias_e_value=1.19188e-31 bias_p_value=2.5678e-38 consensus_score=1213.8 fisher_strand_p_value=2.78873e-40 frequency=2.005e-01 ks_quality_p_value=1 major_base=G major_cov=74/269 major_frequency=7.995e-01 minor_base=T minor_cov=83/3 new_cov=83/3 polymorphism_frequency=2.005e-01 polymorphism_score=109.0 prediction=polymorphism ref_cov=74/269 total_cov=159/272 RA 7 . NC_000913 302469 0 T G bias_e_value=6.18212e-28 bias_p_value=1.33188e-34 consensus_score=841.7 fisher_strand_p_value=1.5965e-36 frequency=2.087e-01 ks_quality_p_value=1 major_base=T major_cov=64/209 major_frequency=7.913e-01 minor_base=G minor_cov=72/0 new_cov=72/0 polymorphism_frequency=2.087e-01 polymorphism_score=46.4 prediction=polymorphism ref_cov=64/209 total_cov=139/209 RA 8 . NC_000913 422429 0 T G bias_e_value=1.48751e-38 bias_p_value=3.20469e-45 consensus_score=660.4 fisher_strand_p_value=2.9636e-47 frequency=2.857e-01 ks_quality_p_value=1 major_base=T major_cov=61/204 major_frequency=7.143e-01 minor_base=G minor_cov=105/1 new_cov=105/1 polymorphism_frequency=2.857e-01 polymorphism_score=102.3 prediction=polymorphism ref_cov=61/204 total_cov=168/205 RA 9 . NC_000913 422432 0 T G bias_e_value=1.67553e-30 bias_p_value=3.60978e-37 consensus_score=812.1 fisher_strand_p_value=4.03755e-39 frequency=2.364e-01 ks_quality_p_value=1 major_base=T major_cov=76/205 major_frequency=7.636e-01 minor_base=G minor_cov=87/0 new_cov=87/0 polymorphism_frequency=2.364e-01 polymorphism_score=67.0 prediction=polymorphism ref_cov=76/205 total_cov=168/205 RA 10 . NC_000913 422435 0 T G bias_e_value=1.33676e-24 bias_p_value=2.87993e-31 consensus_score=850.4 fisher_strand_p_value=3.80699e-33 frequency=2.180e-01 ks_quality_p_value=1 major_base=T major_cov=83/204 major_frequency=7.820e-01 minor_base=G minor_cov=79/1 new_cov=79/1 polymorphism_frequency=2.180e-01 polymorphism_score=56.7 prediction=polymorphism ref_cov=83/204 total_cov=168/205 RA 11 . NC_000913 423552 0 T G bias_e_value=7.18778e-23 bias_p_value=1.54854e-29 consensus_score=635.2 fisher_strand_p_value=2.1625e-31 frequency=2.530e-01 ks_quality_p_value=1 major_base=T major_cov=174/71 major_frequency=7.470e-01 minor_base=G minor_cov=2/81 new_cov=2/81 polymorphism_frequency=2.530e-01 polymorphism_score=72.8 prediction=polymorphism ref_cov=174/71 total_cov=176/152 RA 12 . NC_000913 915213 0 A C bias_e_value=1122390 bias_p_value=0.241809 consensus_score=194.3 fisher_strand_p_value=0.0646856 frequency=2.568e-01 ks_quality_p_value=1 major_base=A major_cov=100/10 major_frequency=7.432e-01 minor_base=C minor_cov=38/0 new_cov=38/0 polymorphism_frequency=2.568e-01 polymorphism_score=27.3 prediction=polymorphism ref_cov=100/10 total_cov=144/11 RA 13 . NC_000913 935551 0 A C bias_e_value=5.824e-05 bias_p_value=1.25472e-11 consensus_score=334.9 fisher_strand_p_value=4.25541e-13 frequency=2.441e-01 ks_quality_p_value=1 major_base=A major_cov=82/79 major_frequency=7.559e-01 minor_base=C minor_cov=52/0 new_cov=52/0 polymorphism_frequency=2.441e-01 polymorphism_score=39.7 prediction=polymorphism ref_cov=82/79 total_cov=152/83 RA 14 . NC_000913 1151759 0 G A bias_e_value=7534.4 bias_p_value=0.00162321 consensus_score=49.4 fisher_strand_p_value=0.682383 frequency=4.791e-01 ks_quality_p_value=0.000245359 major_base=G major_cov=97/102 major_frequency=5.209e-01 minor_base=A minor_cov=85/98 new_cov=85/98 polymorphism_frequency=4.791e-01 polymorphism_score=inf prediction=polymorphism ref_cov=97/102 total_cov=183/200 RA 15 . NC_000913 1286965 0 A C bias_e_value=3472210 bias_p_value=0.748055 consensus_score=237.0 fisher_strand_p_value=0.380385 frequency=2.204e-01 ks_quality_p_value=1 major_base=A major_cov=66/79 major_frequency=7.796e-01 minor_base=C minor_cov=22/19 new_cov=22/19 polymorphism_frequency=2.204e-01 polymorphism_score=28.5 prediction=polymorphism ref_cov=66/79 total_cov=100/108 RA 16 . NC_000913 1308745 0 T G bias_e_value=1.55515e-18 bias_p_value=3.35043e-25 consensus_score=667.9 fisher_strand_p_value=5.45014e-27 frequency=2.012e-01 ks_quality_p_value=1 major_base=T major_cov=176/86 major_frequency=7.988e-01 minor_base=G minor_cov=0/66 new_cov=0/66 polymorphism_frequency=2.012e-01 polymorphism_score=40.0 prediction=polymorphism ref_cov=176/86 total_cov=176/154 RA 17 . NC_000913 1552191 0 C A bias_e_value=1.44311e-09 bias_p_value=3.10904e-16 consensus_score=1002.0 fisher_strand_p_value=7.6945e-18 frequency=2.033e-01 ks_quality_p_value=1 major_base=C major_cov=121/212 major_frequency=7.967e-01 minor_base=A minor_cov=74/11 new_cov=74/11 polymorphism_frequency=2.033e-01 polymorphism_score=60.8 prediction=polymorphism ref_cov=121/212 total_cov=202/225 RA 18 . NC_000913 1674763 0 T . bias_e_value=4023510 bias_p_value=0.866826 consensus_score=676.2 fisher_strand_p_value=0.58436 frequency=3.043e-01 ks_quality_p_value=0.907895 major_base=T major_cov=95/81 major_frequency=6.957e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.043e-01 polymorphism_score=298.7 prediction=polymorphism ref_cov=95/81 total_cov=133/120 RA 19 . NC_000913 1674764 0 G . bias_e_value=2399360 bias_p_value=0.516919 consensus_score=637.9 fisher_strand_p_value=0.493152 frequency=3.169e-01 ks_quality_p_value=0.399325 major_base=G major_cov=90/76 major_frequency=6.831e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.169e-01 polymorphism_score=310.3 prediction=polymorphism ref_cov=90/76 total_cov=128/116 RA 20 . NC_000913 1674765 0 G . bias_e_value=1522530 bias_p_value=0.328014 consensus_score=631.0 fisher_strand_p_value=0.493152 frequency=3.169e-01 ks_quality_p_value=0.200805 major_base=G major_cov=90/76 major_frequency=6.831e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.169e-01 polymorphism_score=310.3 prediction=polymorphism ref_cov=90/76 total_cov=128/116 RA 21 . NC_000913 1674766 0 G . bias_e_value=2137740 bias_p_value=0.460556 consensus_score=634.2 fisher_strand_p_value=0.581468 frequency=3.156e-01 ks_quality_p_value=0.282104 major_base=G major_cov=90/77 major_frequency=6.844e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.156e-01 polymorphism_score=310.3 prediction=polymorphism ref_cov=90/77 total_cov=128/116 RA 22 . NC_000913 1674767 0 G . bias_e_value=2885050 bias_p_value=0.621556 consensus_score=646.9 fisher_strand_p_value=0.581468 frequency=3.156e-01 ks_quality_p_value=0.461767 major_base=G major_cov=90/77 major_frequency=6.844e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.156e-01 polymorphism_score=310.3 prediction=polymorphism ref_cov=90/77 total_cov=128/116 RA 23 . NC_000913 1674768 0 C . bias_e_value=961637 bias_p_value=0.207176 consensus_score=591.6 fisher_strand_p_value=0.485546 frequency=3.319e-01 ks_quality_p_value=0.108099 major_base=C major_cov=85/70 major_frequency=6.681e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.319e-01 polymorphism_score=311.8 prediction=polymorphism ref_cov=85/70 total_cov=123/109 RA 24 . NC_000913 1674769 0 G . bias_e_value=748179 bias_p_value=0.161188 consensus_score=591.9 fisher_strand_p_value=0.487646 frequency=3.305e-01 ks_quality_p_value=0.0772501 major_base=G major_cov=85/71 major_frequency=6.695e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.305e-01 polymorphism_score=312.1 prediction=polymorphism ref_cov=85/71 total_cov=123/110 RA 25 . NC_000913 1674770 0 T . bias_e_value=224694 bias_p_value=0.0484082 consensus_score=554.9 fisher_strand_p_value=0.485546 frequency=3.319e-01 ks_quality_p_value=0.0172399 major_base=T major_cov=85/70 major_frequency=6.681e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.319e-01 polymorphism_score=302.2 prediction=polymorphism ref_cov=85/70 total_cov=123/109 RA 26 . NC_000913 1674771 0 G . bias_e_value=2209280 bias_p_value=0.475968 consensus_score=570.6 fisher_strand_p_value=0.485803 frequency=3.407e-01 ks_quality_p_value=0.355462 major_base=G major_cov=81/68 major_frequency=6.593e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.407e-01 polymorphism_score=313.0 prediction=polymorphism ref_cov=81/68 total_cov=120/108 RA 27 . NC_000913 1674772 0 G . bias_e_value=3096120 bias_p_value=0.66703 consensus_score=576.9 fisher_strand_p_value=0.487063 frequency=3.377e-01 ks_quality_p_value=0.625961 major_base=G major_cov=82/69 major_frequency=6.623e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.377e-01 polymorphism_score=313.0 prediction=polymorphism ref_cov=82/69 total_cov=120/108 RA 28 . NC_000913 1674773 0 G . bias_e_value=3350610 bias_p_value=0.721858 consensus_score=576.6 fisher_strand_p_value=0.484158 frequency=3.392e-01 ks_quality_p_value=0.731651 major_base=G major_cov=82/68 major_frequency=6.608e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.392e-01 polymorphism_score=313.0 prediction=polymorphism ref_cov=82/68 total_cov=120/108 RA 29 . NC_000913 1674774 0 C . bias_e_value=645150 bias_p_value=0.138991 consensus_score=584.3 fisher_strand_p_value=0.580111 frequency=3.333e-01 ks_quality_p_value=0.0535892 major_base=C major_cov=82/72 major_frequency=6.667e-01 minor_base=. minor_cov=38/39 new_cov=38/39 polymorphism_frequency=3.333e-01 polymorphism_score=312.0 prediction=polymorphism ref_cov=82/72 total_cov=120/111 RA 30 . NC_000913 1708758 0 G C bias_e_value=15395.7 bias_p_value=0.00331685 consensus_score=141.6 fisher_strand_p_value=0.000372926 frequency=2.586e-01 ks_quality_p_value=1 major_base=G major_cov=39/47 major_frequency=7.414e-01 minor_base=C minor_cov=3/27 new_cov=3/27 polymorphism_frequency=2.586e-01 polymorphism_score=37.0 prediction=polymorphism ref_cov=39/47 total_cov=45/79 RA 31 . NC_000913 1708805 0 T A bias_e_value=36097.3 bias_p_value=0.00777683 consensus_score=119.5 fisher_strand_p_value=0.000981073 frequency=2.523e-01 ks_quality_p_value=1 major_base=T major_cov=54/29 major_frequency=7.477e-01 minor_base=A minor_cov=27/1 new_cov=27/1 polymorphism_frequency=2.523e-01 polymorphism_score=22.9 prediction=polymorphism ref_cov=54/29 total_cov=91/45 RA 32 . NC_000913 1708883 0 C A bias_e_value=6870.75 bias_p_value=0.00148024 consensus_score=364.6 fisher_strand_p_value=0.00015108 frequency=2.311e-01 ks_quality_p_value=1 major_base=C major_cov=133/40 major_frequency=7.689e-01 minor_base=A minor_cov=51/1 new_cov=51/1 polymorphism_frequency=2.311e-01 polymorphism_score=13.1 prediction=polymorphism ref_cov=133/40 total_cov=191/44 RA 33 . NC_000913 1708901 0 A C bias_e_value=2395.95 bias_p_value=0.000516185 consensus_score=225.1 fisher_strand_p_value=4.70816e-05 frequency=3.054e-01 ks_quality_p_value=1 major_base=A major_cov=129/37 major_frequency=6.946e-01 minor_base=C minor_cov=71/2 new_cov=71/2 polymorphism_frequency=3.054e-01 polymorphism_score=66.1 prediction=polymorphism ref_cov=129/37 total_cov=204/48 RA 34 . NC_000913 1708910 0 G C bias_e_value=12234.4 bias_p_value=0.00263578 consensus_score=415.8 fisher_strand_p_value=0.000287981 frequency=2.281e-01 ks_quality_p_value=1 major_base=G major_cov=138/38 major_frequency=7.719e-01 minor_base=C minor_cov=51/1 new_cov=51/1 polymorphism_frequency=2.281e-01 polymorphism_score=24.8 prediction=polymorphism ref_cov=138/38 total_cov=196/51 RA 35 . NC_000913 1708930 0 C A bias_e_value=2659050 bias_p_value=0.572867 consensus_score=407.6 fisher_strand_p_value=0.233311 frequency=2.707e-01 ks_quality_p_value=1 major_base=C major_cov=150/44 major_frequency=7.293e-01 minor_base=A minor_cov=61/11 new_cov=61/11 polymorphism_frequency=2.707e-01 polymorphism_score=63.3 prediction=polymorphism ref_cov=150/44 total_cov=211/57 RA 36 . NC_000913 1907327 0 G A bias_e_value=163850 bias_p_value=0.0353 consensus_score=135.0 fisher_strand_p_value=0.187354 frequency=4.558e-01 ks_quality_p_value=0.030575 major_base=G major_cov=129/117 major_frequency=5.442e-01 minor_base=A minor_cov=95/111 new_cov=95/111 polymorphism_frequency=4.558e-01 polymorphism_score=inf prediction=polymorphism ref_cov=129/117 total_cov=225/228 RA 37 . NC_000913 2173361 0 C . bias_e_value=3605990 bias_p_value=0.776877 consensus_score=1587.6 fisher_strand_p_value=0.48494 frequency=1 ks_quality_p_value=0.848528 major_base=. major_cov=171/160 major_frequency=9.970e-01 minor_base=C minor_cov=0/1 new_cov=171/160 polymorphism_frequency=9.970e-01 polymorphism_score=-1.9 prediction=consensus ref_cov=0/1 total_cov=171/161 RA 38 . NC_000913 2173362 0 C . bias_e_value=3605990 bias_p_value=0.776877 consensus_score=1587.6 fisher_strand_p_value=0.48494 frequency=1 ks_quality_p_value=0.848528 major_base=. major_cov=171/160 major_frequency=9.970e-01 minor_base=C minor_cov=0/1 new_cov=171/160 polymorphism_frequency=9.970e-01 polymorphism_score=-1.9 prediction=consensus ref_cov=0/1 total_cov=171/161 RA 39 . NC_000913 2229190 0 T G bias_e_value=3034960 bias_p_value=0.653853 consensus_score=247.8 fisher_strand_p_value=0.293955 frequency=2.108e-01 ks_quality_p_value=1 major_base=T major_cov=22/109 major_frequency=7.892e-01 minor_base=G minor_cov=3/32 new_cov=3/32 polymorphism_frequency=2.108e-01 polymorphism_score=19.9 prediction=polymorphism ref_cov=22/109 total_cov=35/147 RA 40 . NC_000913 2560985 0 C A bias_e_value=3951140 bias_p_value=0.851236 consensus_score=633.9 fisher_strand_p_value=0.506792 frequency=2.260e-01 ks_quality_p_value=1 major_base=C major_cov=118/132 major_frequency=7.740e-01 minor_base=A minor_cov=38/35 new_cov=38/35 polymorphism_frequency=2.260e-01 polymorphism_score=52.5 prediction=polymorphism ref_cov=118/132 total_cov=156/168 RA 41 . NC_000913 2560996 0 G T bias_e_value=716368 bias_p_value=0.154335 consensus_score=539.1 fisher_strand_p_value=0.0355982 frequency=2.809e-01 ks_quality_p_value=1 major_base=G major_cov=115/118 major_frequency=7.191e-01 minor_base=T minor_cov=33/58 new_cov=33/58 polymorphism_frequency=2.809e-01 polymorphism_score=80.6 prediction=polymorphism ref_cov=115/118 total_cov=150/176 RA 42 . NC_000913 2610107 0 G A bias_e_value=789574 bias_p_value=0.170106 consensus_score=136.9 fisher_strand_p_value=0.688532 frequency=4.578e-01 ks_quality_p_value=0.0587053 major_base=G major_cov=94/131 major_frequency=5.422e-01 minor_base=A minor_cov=75/115 new_cov=75/115 polymorphism_frequency=4.578e-01 polymorphism_score=inf prediction=polymorphism ref_cov=94/131 total_cov=170/247 RA 43 . NC_000913 2818145 0 T C bias_e_value=82884.9 bias_p_value=0.0178568 consensus_score=385.2 fisher_strand_p_value=0.0398078 frequency=2.032e-01 ks_quality_p_value=0.0643904 major_base=T major_cov=45/104 major_frequency=7.968e-01 minor_base=C minor_cov=5/33 new_cov=5/33 polymorphism_frequency=2.032e-01 polymorphism_score=99.8 prediction=polymorphism ref_cov=45/104 total_cov=86/138 RA 44 . NC_000913 2818158 0 T A bias_e_value=2560220 bias_p_value=0.551575 consensus_score=268.6 fisher_strand_p_value=0.296864 frequency=2.637e-01 ks_quality_p_value=0.737673 major_base=T major_cov=51/83 major_frequency=7.363e-01 minor_base=A minor_cov=14/34 new_cov=14/34 polymorphism_frequency=2.637e-01 polymorphism_score=101.6 prediction=polymorphism ref_cov=51/83 total_cov=67/117 RA 45 . NC_000913 2947465 0 T . bias_e_value=3646800 bias_p_value=0.785669 consensus_score=345.4 fisher_strand_p_value=0.794325 frequency=2.536e-01 ks_quality_p_value=0.530669 major_base=T major_cov=16/87 major_frequency=7.464e-01 minor_base=. minor_cov=6/29 new_cov=6/29 polymorphism_frequency=2.536e-01 polymorphism_score=126.9 prediction=polymorphism ref_cov=16/87 total_cov=23/116 RA 46 . NC_000913 2947467 0 A C bias_e_value=4461140 bias_p_value=0.96111 consensus_score=270.2 fisher_strand_p_value=0.758144 frequency=2.541e-01 ks_quality_p_value=0.968679 major_base=A major_cov=12/79 major_frequency=7.459e-01 minor_base=C minor_cov=3/28 new_cov=3/28 polymorphism_frequency=2.541e-01 polymorphism_score=100.0 prediction=polymorphism ref_cov=12/79 total_cov=15/107 RA 47 . NC_000913 2947591 0 A . bias_e_value=107005 bias_p_value=0.0230533 consensus_score=202.8 fisher_strand_p_value=0.438658 frequency=4.082e-01 ks_quality_p_value=0.00788255 major_base=A major_cov=55/3 major_frequency=5.918e-01 minor_base=. minor_cov=36/4 new_cov=36/4 polymorphism_frequency=4.082e-01 polymorphism_score=159.2 prediction=polymorphism ref_cov=55/3 total_cov=91/7 RA 48 . NC_000913 3269988 0 A T bias_e_value=2505460 bias_p_value=0.539778 consensus_score=320.3 fisher_strand_p_value=0.211311 frequency=2.172e-01 ks_quality_p_value=1 major_base=A major_cov=23/132 major_frequency=7.828e-01 minor_base=T minor_cov=3/40 new_cov=3/40 polymorphism_frequency=2.172e-01 polymorphism_score=31.1 prediction=polymorphism ref_cov=23/132 total_cov=31/180 RA 49 . NC_000913 3269994 0 G T bias_e_value=116369 bias_p_value=0.0250706 consensus_score=188.7 fisher_strand_p_value=0.00381691 frequency=3.605e-01 ks_quality_p_value=1 major_base=G major_cov=24/86 major_frequency=6.395e-01 minor_base=T minor_cov=3/59 new_cov=3/59 polymorphism_frequency=3.605e-01 polymorphism_score=41.1 prediction=polymorphism ref_cov=24/86 total_cov=27/169 RA 50 . NC_000913 3270151 0 A C bias_e_value=1.24744 bias_p_value=2.68749e-07 consensus_score=260.1 fisher_strand_p_value=1.40868e-08 frequency=2.120e-01 ks_quality_p_value=1 major_base=A major_cov=99/72 major_frequency=7.880e-01 minor_base=C minor_cov=45/1 new_cov=45/1 polymorphism_frequency=2.120e-01 polymorphism_score=25.6 prediction=polymorphism ref_cov=99/72 total_cov=150/76 RA 51 . NC_000913 3270163 0 C A bias_e_value=0.899369 bias_p_value=1.9376e-07 consensus_score=376.7 fisher_strand_p_value=9.97577e-09 frequency=2.203e-01 ks_quality_p_value=1 major_base=C major_cov=87/90 major_frequency=7.797e-01 minor_base=A minor_cov=46/4 new_cov=46/4 polymorphism_frequency=2.203e-01 polymorphism_score=10.8 prediction=polymorphism ref_cov=87/90 total_cov=164/96 RA 52 . NC_000913 3270167 0 C G bias_e_value=9.97428e-05 bias_p_value=2.14886e-11 consensus_score=392.9 fisher_strand_p_value=7.42824e-13 frequency=2.255e-01 ks_quality_p_value=1 major_base=C major_cov=82/100 major_frequency=7.745e-01 minor_base=G minor_cov=51/2 new_cov=51/2 polymorphism_frequency=2.255e-01 polymorphism_score=45.0 prediction=polymorphism ref_cov=82/100 total_cov=172/110 RA 53 . NC_000913 3473612 0 A C bias_e_value=4578150 bias_p_value=0.986319 consensus_score=116.6 fisher_strand_p_value=0.85634 frequency=4.364e-01 ks_quality_p_value=0.979995 major_base=A major_cov=133/146 major_frequency=5.636e-01 minor_base=C minor_cov=101/115 new_cov=101/115 polymorphism_frequency=4.364e-01 polymorphism_score=inf prediction=polymorphism ref_cov=133/146 total_cov=234/262 RA 54 . NC_000913 3560455 1 . G bias_e_value=4639240 bias_p_value=0.99948 consensus_score=1638.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.967937 major_base=G major_cov=193/227 major_frequency=9.953e-01 minor_base=. minor_cov=1/1 new_cov=193/227 polymorphism_frequency=9.953e-01 polymorphism_score=-1.1 prediction=consensus ref_cov=1/1 total_cov=194/229 RA 55 . NC_000913 3781032 0 T G bias_e_value=9.09602e-26 bias_p_value=1.95965e-32 consensus_score=728.7 fisher_strand_p_value=2.50047e-34 frequency=2.285e-01 ks_quality_p_value=1 major_base=T major_cov=61/199 major_frequency=7.715e-01 minor_base=G minor_cov=75/2 new_cov=75/2 polymorphism_frequency=2.285e-01 polymorphism_score=69.8 prediction=polymorphism ref_cov=61/199 total_cov=172/201 RA 56 . NC_000913 3781044 0 T A bias_e_value=9.89661e-21 bias_p_value=2.13213e-27 consensus_score=801.9 fisher_strand_p_value=3.20084e-29 frequency=2.053e-01 ks_quality_p_value=1 major_base=T major_cov=86/185 major_frequency=7.947e-01 minor_base=A minor_cov=70/0 new_cov=70/0 polymorphism_frequency=2.053e-01 polymorphism_score=40.1 prediction=polymorphism ref_cov=86/185 total_cov=170/188 RA 57 . NC_000913 4186425 0 C T bias_e_value=4628990 bias_p_value=0.997272 consensus_score=125.7 fisher_strand_p_value=0.927053 frequency=4.671e-01 ks_quality_p_value=1 major_base=C major_cov=115/144 major_frequency=5.329e-01 minor_base=T minor_cov=99/128 new_cov=99/128 polymorphism_frequency=4.671e-01 polymorphism_score=inf prediction=polymorphism ref_cov=115/144 total_cov=214/272 RA 58 . NC_000913 4187667 0 T A bias_e_value=4217940 bias_p_value=0.908715 consensus_score=73.2 fisher_strand_p_value=1 frequency=4.777e-01 ks_quality_p_value=0.604376 major_base=T major_cov=119/127 major_frequency=5.223e-01 minor_base=A minor_cov=108/117 new_cov=108/117 polymorphism_frequency=4.777e-01 polymorphism_score=inf prediction=polymorphism ref_cov=119/127 total_cov=227/244 RA 59 . NC_000913 4213051 0 A C bias_e_value=1993390 bias_p_value=0.429457 consensus_score=30.1 fisher_strand_p_value=0.154995 frequency=4.444e-01 ks_quality_p_value=0.950475 major_base=A major_cov=38/32 major_frequency=5.556e-01 minor_base=C minor_cov=23/33 new_cov=23/33 polymorphism_frequency=4.444e-01 polymorphism_score=207.3 prediction=polymorphism ref_cov=38/32 total_cov=61/65 RA 60 . NC_000913 4296060 0 C T bias_e_value=1.36438e-12 bias_p_value=2.93943e-19 consensus_score=777.4 fisher_strand_p_value=0.2033 frequency=2.788e-01 ks_quality_p_value=3.04184e-20 major_base=C major_cov=222/210 major_frequency=7.212e-01 minor_base=T minor_cov=76/91 new_cov=76/91 polymorphism_frequency=2.788e-01 polymorphism_score=inf prediction=polymorphism ref_cov=222/210 total_cov=324/312 RA 61 . NC_000913 4296380 1 . C bias_e_value=3216990 bias_p_value=0.69307 consensus_score=1029.8 fisher_strand_p_value=0.327493 frequency=1 ks_quality_p_value=1 major_base=C major_cov=126/159 major_frequency=9.862e-01 minor_base=. minor_cov=3/1 new_cov=126/159 polymorphism_frequency=9.862e-01 polymorphism_score=4.3 prediction=consensus ref_cov=3/1 total_cov=129/160 RA 62 . NC_000913 4296380 2 . G bias_e_value=3227550 bias_p_value=0.695345 consensus_score=1023.0 fisher_strand_p_value=0.329537 frequency=1 ks_quality_p_value=1 major_base=G major_cov=126/157 major_frequency=9.861e-01 minor_base=. minor_cov=3/1 new_cov=126/157 polymorphism_frequency=9.861e-01 polymorphism_score=4.2 prediction=consensus ref_cov=3/1 total_cov=129/160 RA 63 . NC_000913 4392457 0 G T bias_e_value=4037.96 bias_p_value=0.000869941 consensus_score=417.6 fisher_strand_p_value=8.37471e-05 frequency=2.222e-01 ks_quality_p_value=1 major_base=G major_cov=57/111 major_frequency=7.778e-01 minor_base=T minor_cov=3/45 new_cov=3/45 polymorphism_frequency=2.222e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=57/111 total_cov=64/191 RA 64 . NC_000913 4392567 0 G T bias_e_value=260486 bias_p_value=0.0561193 consensus_score=472.8 fisher_strand_p_value=0.0100147 frequency=2.081e-01 ks_quality_p_value=1 major_base=G major_cov=119/56 major_frequency=7.919e-01 minor_base=T minor_cov=40/6 new_cov=40/6 polymorphism_frequency=2.081e-01 polymorphism_score=37.5 prediction=polymorphism ref_cov=119/56 total_cov=163/74 RA 65 . NC_000913 4412781 0 C G bias_e_value=1.88232e-29 bias_p_value=4.05528e-36 consensus_score=1070.3 fisher_strand_p_value=4.66347e-38 frequency=2.055e-01 ks_quality_p_value=1 major_base=C major_cov=105/239 major_frequency=7.945e-01 minor_base=G minor_cov=89/0 new_cov=89/0 polymorphism_frequency=2.055e-01 polymorphism_score=76.2 prediction=polymorphism ref_cov=105/239 total_cov=206/239 RA 66 . NC_000913 4606192 0 G C bias_e_value=144508 bias_p_value=0.0311328 consensus_score=145.3 fisher_strand_p_value=0.00493238 frequency=2.688e-01 ks_quality_p_value=1 major_base=G major_cov=16/52 major_frequency=7.312e-01 minor_base=C minor_cov=0/25 new_cov=0/25 polymorphism_frequency=2.688e-01 polymorphism_score=23.0 prediction=polymorphism ref_cov=16/52 total_cov=17/83 MC 67 . NC_000913 257908 258683 768 0 left_inside_cov=0 left_outside_cov=459 right_inside_cov=0 right_outside_cov=460 MC 68 . NC_000913 1673557 1673676 0 0 left_inside_cov=0 left_outside_cov=443 right_inside_cov=0 right_outside_cov=441 MC 69 . NC_000913 3423697 3424566 537 328 left_inside_cov=254 left_outside_cov=260 right_inside_cov=256 right_outside_cov=260 JC 70 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 circular_chromosome=1 coverage_minus=209 coverage_plus=215 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=149 key=NC_000913__1__1__NC_000913__4641652__-1__0____151__151__0__0 max_left=150 max_left_minus=150 max_left_plus=149 max_min_left=75 max_min_left_minus=75 max_min_left_plus=74 max_min_right=75 max_min_right_minus=74 max_min_right_plus=75 max_pos_hash_score=300 max_right=148 max_right_minus=148 max_right_plus=148 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=0.97 new_junction_read_count=428 polymorphism_frequency=1.000e+00 pos_hash_score=229 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=424 JC 71 . NC_000913 25648 1 NC_000913 4623634 -1 0 alignment_overlap=5 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=6.837e-03 junction_possible_overlap_registers=144 key=NC_000913__25648__1__NC_000913__4623639__-1__5____151__151__0__0 max_left=145 max_left_minus=145 max_left_plus=93 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=53 max_min_right_minus=32 max_min_right_plus=53 max_pos_hash_score=290 max_right=53 max_right_minus=32 max_right_plus=53 neg_log10_pos_hash_p_value=43.8 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=6.837e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.04 side_1_overlap=5 side_1_possible_overlap_registers=149 side_1_read_count=459 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.01 side_2_overlap=0 side_2_possible_overlap_registers=144 side_2_read_count=428 side_2_redundant=0 total_non_overlap_reads=3 JC 72 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=214 coverage_plus=221 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=141 key=NC_000913__257907__-1__NC_000913__258676__1__8____151__151__0__0 max_left=142 max_left_minus=140 max_left_plus=142 max_min_left=71 max_min_left_minus=71 max_min_left_plus=71 max_min_right=71 max_min_right_minus=71 max_min_right_plus=71 max_pos_hash_score=284 max_right=142 max_right_minus=142 max_right_plus=141 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.05 new_junction_read_count=437 polymorphism_frequency=1.000e+00 pos_hash_score=200 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=435 JC 73 . NC_000913 273955 1 NC_000913 889489 1 0 alignment_overlap=1 coverage_minus=2 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=6.982e-02 junction_possible_overlap_registers=148 key=NC_000913__273955__1__NC_000913__889488__1__1____151__151__1__0 max_left=126 max_left_minus=126 max_left_plus=68 max_min_left=68 max_min_left_minus=0 max_min_left_plus=68 max_min_right=53 max_min_right_minus=53 max_min_right_plus=0 max_pos_hash_score=298 max_right=114 max_right_minus=53 max_right_plus=114 neg_log10_pos_hash_p_value=43.2 new_junction_coverage=0.07 new_junction_read_count=31 polymorphism_frequency=6.982e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.94 side_2_overlap=0 side_2_possible_overlap_registers=148 side_2_read_count=413 side_2_redundant=0 total_non_overlap_reads=4 JC 74 . NC_000913 273955 1 NC_000913 1091176 -1 0 alignment_overlap=0 coverage_minus=1 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=8.222e-02 junction_possible_overlap_registers=149 key=NC_000913__273955__1__NC_000913__1091176__-1__0____151__151__1__0 max_left=98 max_left_minus=76 max_left_plus=98 max_min_left=72 max_min_left_minus=0 max_min_left_plus=72 max_min_right=75 max_min_right_minus=75 max_min_right_plus=51 max_pos_hash_score=300 max_right=119 max_right_minus=75 max_right_plus=119 neg_log10_pos_hash_p_value=42.3 new_junction_coverage=0.08 new_junction_read_count=37 polymorphism_frequency=8.222e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.94 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=413 side_2_redundant=0 total_non_overlap_reads=5 JC 75 . NC_000913 275149 -1 NC_000913 1091173 1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=1.977e-01 junction_possible_overlap_registers=149 key=NC_000913__275149__-1__NC_000913__1091173__1__0____151__151__1__0 max_left=128 max_left_minus=87 max_left_plus=128 max_min_left=53 max_min_left_minus=53 max_min_left_plus=27 max_min_right=64 max_min_right_minus=64 max_min_right_plus=55 max_pos_hash_score=300 max_right=121 max_right_minus=97 max_right_plus=121 neg_log10_pos_hash_p_value=42.3 new_junction_coverage=0.23 new_junction_read_count=101 polymorphism_frequency=1.977e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.93 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=410 side_2_redundant=0 total_non_overlap_reads=5 JC 76 . NC_000913 291401 -1 NC_000913 4434629 1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=8.299e-03 junction_possible_overlap_registers=149 key=NC_000913__291401__-1__NC_000913__4434629__1__0____151__151__1__0 max_left=116 max_left_minus=116 max_left_plus=81 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=70 max_min_right_minus=50 max_min_right_plus=70 max_pos_hash_score=300 max_right=70 max_right_minus=50 max_right_plus=70 neg_log10_pos_hash_p_value=44.4 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=8.299e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.09 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=478 side_2_redundant=0 total_non_overlap_reads=4 JC 77 . NC_000913 493652 -1 NC_000913 2031096 1 0 alignment_overlap=6 coverage_minus=4 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=1.270e-02 junction_possible_overlap_registers=143 key=NC_000913__493652__-1__NC_000913__2031090__1__6____151__151__0__0 max_left=144 max_left_minus=144 max_left_plus=51 max_min_left=57 max_min_left_minus=57 max_min_left_plus=51 max_min_right=1 max_min_right_minus=1 max_min_right_plus=0 max_pos_hash_score=288 max_right=94 max_right_minus=88 max_right_plus=94 neg_log10_pos_hash_p_value=42.6 new_junction_coverage=0.01 new_junction_read_count=5 polymorphism_frequency=1.270e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.06 side_1_overlap=6 side_1_possible_overlap_registers=149 side_1_read_count=469 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.77 side_2_overlap=0 side_2_possible_overlap_registers=143 side_2_read_count=327 side_2_redundant=0 total_non_overlap_reads=5 JC 78 . NC_000913 696863 1 NC_000913 697134 -1 -12 alignment_overlap=-12 coverage_minus=39 coverage_plus=27 flanking_left=151 flanking_right=151 frequency=3.001e-01 junction_possible_overlap_registers=137 key=NC_000913__696863__1__NC_000913__697134__-1__-12__GAAGAAACAATC__151__151__0__0 max_left=134 max_left_minus=134 max_left_plus=133 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=60 max_min_right_minus=59 max_min_right_plus=60 max_pos_hash_score=276 max_right=60 max_right_minus=59 max_right_plus=60 neg_log10_pos_hash_p_value=19.0 new_junction_coverage=0.27 new_junction_read_count=108 polymorphism_frequency=3.001e-01 pos_hash_score=48 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.31 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=137 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.93 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=411 side_2_redundant=0 total_non_overlap_reads=66 unique_read_sequence=GAAGAAACAATC JC 79 . NC_000913 780554 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=17 coverage_plus=18 flanking_left=151 flanking_right=151 frequency=2.144e-01 junction_possible_overlap_registers=145 key=NC_000913__780554__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=67 max_left_minus=67 max_left_plus=60 max_min_left=67 max_min_left_minus=67 max_min_left_plus=60 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=292 max_right=144 max_right_minus=144 max_right_plus=138 neg_log10_pos_hash_p_value=25.4 new_junction_coverage=0.19 new_junction_read_count=83 polymorphism_frequency=2.144e-01 pos_hash_score=33 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.03 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=453 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.39 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=172 side_2_redundant=0 total_non_overlap_reads=35 unique_read_sequence=GAAG JC 80 . NC_000913 780554 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=22 coverage_plus=32 flanking_left=151 flanking_right=151 frequency=3.420e-01 junction_possible_overlap_registers=148 key=NC_000913__780554__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=64 max_left_minus=64 max_left_plus=57 max_min_left=64 max_min_left_minus=64 max_min_left_plus=57 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=298 max_right=134 max_right_minus=130 max_right_plus=134 neg_log10_pos_hash_p_value=22.5 new_junction_coverage=0.33 new_junction_read_count=143 polymorphism_frequency=3.420e-01 pos_hash_score=42 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.03 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=453 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.23 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=101 side_2_redundant=0 total_non_overlap_reads=54 unique_read_sequence=G JC 81 . NC_000913 781369 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=19 coverage_plus=19 flanking_left=151 flanking_right=151 frequency=3.252e-01 junction_possible_overlap_registers=145 key=NC_000913__781369__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=135 max_left_minus=135 max_left_plus=79 max_min_left=67 max_min_left_minus=67 max_min_left_plus=60 max_min_right=68 max_min_right_minus=45 max_min_right_plus=68 max_pos_hash_score=292 max_right=144 max_right_minus=144 max_right_plus=138 neg_log10_pos_hash_p_value=24.2 new_junction_coverage=0.25 new_junction_read_count=106 polymorphism_frequency=3.252e-01 pos_hash_score=36 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=280 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.39 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=172 side_2_redundant=0 total_non_overlap_reads=38 unique_read_sequence=GAAG JC 82 . NC_000913 781369 1 NC_000913 2521006 -1 -3 alignment_overlap=-3 coverage_minus=17 coverage_plus=14 flanking_left=151 flanking_right=151 frequency=3.063e-01 junction_possible_overlap_registers=146 key=NC_000913__781369__1__NC_000913__2521006__-1__-3__GAG__151__151__0__0 max_left=137 max_left_minus=137 max_left_plus=129 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=66 max_min_right_minus=65 max_min_right_plus=66 max_pos_hash_score=294 max_right=66 max_right_minus=65 max_right_plus=66 neg_log10_pos_hash_p_value=28.5 new_junction_coverage=0.23 new_junction_read_count=98 polymorphism_frequency=3.063e-01 pos_hash_score=26 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=280 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.39 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=173 side_2_redundant=0 total_non_overlap_reads=31 unique_read_sequence=GAG JC 83 . NC_000913 781369 1 NC_000913 2521128 -1 -1 alignment_overlap=-1 coverage_minus=17 coverage_plus=15 flanking_left=151 flanking_right=151 frequency=3.652e-01 junction_possible_overlap_registers=148 key=NC_000913__781369__1__NC_000913__2521128__-1__-1__G__151__151__0__0 max_left=137 max_left_minus=137 max_left_plus=129 max_min_left=3 max_min_left_minus=0 max_min_left_plus=3 max_min_right=68 max_min_right_minus=67 max_min_right_plus=68 max_pos_hash_score=298 max_right=141 max_right_minus=67 max_right_plus=141 neg_log10_pos_hash_p_value=28.3 new_junction_coverage=0.25 new_junction_read_count=110 polymorphism_frequency=3.652e-01 pos_hash_score=27 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=280 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.24 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=105 side_2_redundant=0 total_non_overlap_reads=32 unique_read_sequence=G JC 84 . NC_000913 781369 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=24 coverage_plus=33 flanking_left=151 flanking_right=151 frequency=4.688e-01 junction_possible_overlap_registers=148 key=NC_000913__781369__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=135 max_left_minus=135 max_left_plus=79 max_min_left=64 max_min_left_minus=64 max_min_left_plus=57 max_min_right=71 max_min_right_minus=48 max_min_right_plus=71 max_pos_hash_score=298 max_right=134 max_right_minus=130 max_right_plus=134 neg_log10_pos_hash_p_value=21.5 new_junction_coverage=0.38 new_junction_read_count=167 polymorphism_frequency=4.688e-01 pos_hash_score=45 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=280 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.23 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=101 side_2_redundant=0 total_non_overlap_reads=57 unique_read_sequence=G JC 85 . NC_000913 781446 -1 NC_000913 2521487 1 0 alignment_overlap=20 coverage_minus=18 coverage_plus=18 flanking_left=151 flanking_right=151 frequency=1.487e-01 junction_possible_overlap_registers=129 key=NC_000913__781446__-1__NC_000913__2521467__1__20____151__151__0__0 max_left=123 max_left_minus=123 max_left_plus=115 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=41 max_min_right_minus=38 max_min_right_plus=41 max_pos_hash_score=260 max_right=41 max_right_minus=38 max_right_plus=41 neg_log10_pos_hash_p_value=23.1 new_junction_coverage=0.14 new_junction_read_count=53 polymorphism_frequency=1.487e-01 pos_hash_score=33 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.61 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=269 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.98 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=374 side_2_redundant=0 total_non_overlap_reads=36 JC 86 . NC_000913 781577 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=17 coverage_plus=18 flanking_left=151 flanking_right=151 frequency=4.629e-01 junction_possible_overlap_registers=145 key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=67 max_left_minus=67 max_left_plus=60 max_min_left=67 max_min_left_minus=67 max_min_left_plus=60 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=292 max_right=144 max_right_minus=144 max_right_plus=138 neg_log10_pos_hash_p_value=25.4 new_junction_coverage=0.44 new_junction_read_count=190 polymorphism_frequency=4.629e-01 pos_hash_score=33 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=281 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.39 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=172 side_2_redundant=0 total_non_overlap_reads=35 unique_read_sequence=GAAG JC 87 . NC_000913 781577 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=22 coverage_plus=32 flanking_left=151 flanking_right=151 frequency=5.685e-01 junction_possible_overlap_registers=148 key=NC_000913__781577__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=64 max_left_minus=64 max_left_plus=57 max_min_left=64 max_min_left_minus=64 max_min_left_plus=57 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=298 max_right=134 max_right_minus=130 max_right_plus=134 neg_log10_pos_hash_p_value=22.5 new_junction_coverage=0.57 new_junction_read_count=250 polymorphism_frequency=5.685e-01 pos_hash_score=42 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=281 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.23 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=101 side_2_redundant=0 total_non_overlap_reads=54 unique_read_sequence=G JC 88 . NC_000913 1050545 -1 NC_000913 4542042 1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=7.181e-03 junction_possible_overlap_registers=149 key=NC_000913__1050545__-1__NC_000913__4542042__1__0____151__151__0__0 max_left=142 max_left_minus=142 max_left_plus=42 max_min_left=42 max_min_left_minus=6 max_min_left_plus=42 max_min_right=50 max_min_right_minus=50 max_min_right_plus=0 max_pos_hash_score=300 max_right=145 max_right_minus=145 max_right_plus=108 neg_log10_pos_hash_p_value=43.3 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=7.181e-03 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.26 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=553 side_2_redundant=0 total_non_overlap_reads=4 JC 89 . NC_000913 1104115 -1 NC_000913 1104420 1 0 alignment_overlap=1 coverage_minus=92 coverage_plus=110 flanking_left=151 flanking_right=151 frequency=5.115e-01 junction_possible_overlap_registers=148 key=NC_000913__1104115__-1__NC_000913__1104419__1__1____151__151__0__0 max_left=148 max_left_minus=148 max_left_plus=147 max_min_left=73 max_min_left_minus=73 max_min_left_plus=73 max_min_right=75 max_min_right_minus=75 max_min_right_plus=74 max_pos_hash_score=298 max_right=148 max_right_minus=148 max_right_plus=148 neg_log10_pos_hash_p_value=3.2 new_junction_coverage=0.46 new_junction_read_count=203 polymorphism_frequency=5.115e-01 pos_hash_score=147 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.43 side_1_overlap=1 side_1_possible_overlap_registers=149 side_1_read_count=191 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.45 side_2_overlap=0 side_2_possible_overlap_registers=148 side_2_read_count=198 side_2_redundant=0 total_non_overlap_reads=202 JC 90 . NC_000913 1207790 1 NC_000913 1209619 1 0 alignment_overlap=16 coverage_minus=130 coverage_plus=157 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=133 key=NC_000913__1207790__1__NC_000913__1209603__1__16____151__151__0__0 max_left=134 max_left_minus=134 max_left_plus=134 max_min_left=67 max_min_left_minus=67 max_min_left_plus=61 max_min_right=67 max_min_right_minus=66 max_min_right_plus=67 max_pos_hash_score=268 max_right=132 max_right_minus=132 max_right_plus=132 neg_log10_pos_hash_p_value=0.9 new_junction_coverage=0.73 new_junction_read_count=287 polymorphism_frequency=8.186e-01 pos_hash_score=163 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.12 side_1_overlap=16 side_1_possible_overlap_registers=149 side_1_read_count=54 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.20 side_2_overlap=0 side_2_possible_overlap_registers=133 side_2_read_count=79 side_2_redundant=0 total_non_overlap_reads=287 JC 91 . NC_000913 1207805 -1 NC_000913 1209602 -1 0 alignment_overlap=16 coverage_minus=132 coverage_plus=140 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=133 key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____151__151__0__0 max_left=134 max_left_minus=132 max_left_plus=134 max_min_left=66 max_min_left_minus=66 max_min_left_plus=66 max_min_right=67 max_min_right_minus=65 max_min_right_plus=67 max_pos_hash_score=268 max_right=132 max_right_minus=132 max_right_plus=132 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.70 new_junction_read_count=274 polymorphism_frequency=8.105e-01 pos_hash_score=173 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.12 side_1_overlap=16 side_1_possible_overlap_registers=149 side_1_read_count=55 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.20 side_2_overlap=0 side_2_possible_overlap_registers=133 side_2_read_count=79 side_2_redundant=0 total_non_overlap_reads=272 JC 92 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=4 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=1.061e-01 junction_possible_overlap_registers=129 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____151__151__0__0 max_left=66 max_left_minus=11 max_left_plus=66 max_min_left=11 max_min_left_minus=11 max_min_left_plus=8 max_min_right=1 max_min_right_minus=0 max_min_right_plus=1 max_pos_hash_score=260 max_right=128 max_right_minus=122 max_right_plus=128 neg_log10_pos_hash_p_value=37.8 new_junction_coverage=0.07 new_junction_read_count=26 polymorphism_frequency=1.061e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.39 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=170 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=291 side_2_redundant=0 total_non_overlap_reads=7 JC 93 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=32 coverage_plus=6 flanking_left=151 flanking_right=151 frequency=2.233e-01 junction_possible_overlap_registers=129 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____151__151__0__0 max_left=128 max_left_minus=128 max_left_plus=119 max_min_left=65 max_min_left_minus=65 max_min_left_plus=14 max_min_right=57 max_min_right_minus=57 max_min_right_plus=12 max_pos_hash_score=260 max_right=128 max_right_minus=122 max_right_plus=128 neg_log10_pos_hash_p_value=23.5 new_junction_coverage=0.16 new_junction_read_count=62 polymorphism_frequency=2.233e-01 pos_hash_score=32 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.37 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=162 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=291 side_2_redundant=0 total_non_overlap_reads=38 JC 94 . NC_000913 1287084 -1 NC_000913 4175537 -1 0 alignment_overlap=19 coverage_minus=10 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=1.003e-01 junction_possible_overlap_registers=130 key=NC_000913__1287084__-1__NC_000913__4175556__-1__19____151__151__0__0 max_left=129 max_left_minus=129 max_left_plus=120 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=20 max_min_right_minus=20 max_min_right_plus=12 max_pos_hash_score=262 max_right=20 max_right_minus=20 max_right_plus=12 neg_log10_pos_hash_p_value=34.1 new_junction_coverage=0.08 new_junction_read_count=31 polymorphism_frequency=1.003e-01 pos_hash_score=12 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.37 side_1_overlap=19 side_1_possible_overlap_registers=149 side_1_read_count=162 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.08 side_2_overlap=0 side_2_possible_overlap_registers=130 side_2_read_count=415 side_2_redundant=0 total_non_overlap_reads=13 JC 95 . NC_000913 1287262 -1 NC_000913 1287382 1 0 alignment_overlap=21 coverage_minus=2 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.712e-02 junction_possible_overlap_registers=128 key=NC_000913__1287262__-1__NC_000913__1287361__1__21____151__151__0__0 max_left=126 max_left_minus=126 max_left_plus=65 max_min_left=11 max_min_left_minus=0 max_min_left_plus=11 max_min_right=64 max_min_right_minus=55 max_min_right_plus=64 max_pos_hash_score=258 max_right=114 max_right_minus=55 max_right_plus=114 neg_log10_pos_hash_p_value=40.5 new_junction_coverage=0.01 new_junction_read_count=5 polymorphism_frequency=1.712e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.85 side_1_overlap=21 side_1_possible_overlap_registers=149 side_1_read_count=375 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.67 side_2_overlap=0 side_2_possible_overlap_registers=128 side_2_read_count=252 side_2_redundant=0 total_non_overlap_reads=4 JC 96 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=234 coverage_plus=221 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=145 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____151__151__0__0 max_left=145 max_left_minus=145 max_left_plus=143 max_min_left=72 max_min_left_minus=72 max_min_left_plus=72 max_min_right=73 max_min_right_minus=73 max_min_right_plus=73 max_pos_hash_score=292 max_right=146 max_right_minus=145 max_right_plus=146 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.06 new_junction_read_count=456 polymorphism_frequency=9.989e-01 pos_hash_score=222 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=149 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=145 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=455 JC 97 . NC_000913 1552042 1 NC_000913 1552368 -1 -29 alignment_overlap=-29 coverage_minus=0 coverage_plus=21 flanking_left=151 flanking_right=151 frequency=NA junction_possible_overlap_registers=120 key=NC_000913__1552042__1__NC_000913__1552368__-1__-29__TAAAATGACTCCTTTTACAGCGCCATTTT__151__151__0__0 max_left=99 max_left_minus=0 max_left_plus=99 max_min_left=55 max_min_left_minus=0 max_min_left_plus=55 max_min_right=54 max_min_right_minus=0 max_min_right_plus=54 max_pos_hash_score=242 max_right=113 max_right_minus=0 max_right_plus=113 neg_log10_pos_hash_p_value=29.3 new_junction_coverage=0.12 new_junction_read_count=43 polymorphism_frequency=NA pos_hash_score=17 prediction=unknown reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=21 unique_read_sequence=TAAAATGACTCCTTTTACAGCGCCATTTT JC 98 . NC_000913 1673556 -1 NC_000913 1673677 1 0 alignment_overlap=2 coverage_minus=220 coverage_plus=207 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=147 key=NC_000913__1673556__-1__NC_000913__1673675__1__2____151__151__0__0 max_left=148 max_left_minus=147 max_left_plus=148 max_min_left=73 max_min_left_minus=73 max_min_left_plus=73 max_min_right=74 max_min_right_minus=73 max_min_right_plus=74 max_pos_hash_score=296 max_right=148 max_right_minus=148 max_right_plus=147 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=0.99 new_junction_read_count=430 polymorphism_frequency=1.000e+00 pos_hash_score=214 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=2 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=147 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=427 JC 99 . NC_000913 1674768 -1 NC_000913 1674781 1 0 alignment_overlap=6 coverage_minus=82 coverage_plus=94 flanking_left=151 flanking_right=151 frequency=5.446e-01 junction_possible_overlap_registers=143 key=NC_000913__1674768__-1__NC_000913__1674775__1__6____151__151__0__0 max_left=144 max_left_minus=144 max_left_plus=143 max_min_left=72 max_min_left_minus=67 max_min_left_plus=72 max_min_right=71 max_min_right_minus=70 max_min_right_plus=71 max_pos_hash_score=288 max_right=144 max_right_minus=143 max_right_plus=144 neg_log10_pos_hash_p_value=4.8 new_junction_coverage=0.42 new_junction_read_count=178 polymorphism_frequency=5.446e-01 pos_hash_score=126 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.36 side_1_overlap=6 side_1_possible_overlap_registers=149 side_1_read_count=158 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.35 side_2_overlap=0 side_2_possible_overlap_registers=143 side_2_read_count=146 side_2_redundant=0 total_non_overlap_reads=176 JC 100 . NC_000913 1907448 1 NC_000913 2067353 -1 0 alignment_overlap=4 coverage_minus=5 coverage_plus=6 flanking_left=151 flanking_right=151 frequency=4.646e-02 junction_possible_overlap_registers=145 key=NC_000913__1907444__1__NC_000913__2067353__-1__4____151__151__0__0 max_left=140 max_left_minus=135 max_left_plus=140 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=48 max_min_right_minus=31 max_min_right_plus=48 max_pos_hash_score=292 max_right=48 max_right_minus=31 max_right_plus=48 neg_log10_pos_hash_p_value=38.3 new_junction_coverage=0.05 new_junction_read_count=21 polymorphism_frequency=4.646e-02 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=0 side_1_possible_overlap_registers=145 side_1_read_count=431 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=4 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=11 JC 101 . NC_000913 1907448 1 NC_000913 2290113 -1 0 alignment_overlap=4 coverage_minus=8 coverage_plus=13 flanking_left=151 flanking_right=151 frequency=2.092e-01 junction_possible_overlap_registers=145 key=NC_000913__1907444__1__NC_000913__2290113__-1__4____151__151__0__1 max_left=140 max_left_minus=135 max_left_plus=140 max_min_left=52 max_min_left_minus=32 max_min_left_plus=52 max_min_right=57 max_min_right_minus=31 max_min_right_plus=57 max_pos_hash_score=292 max_right=136 max_right_minus=125 max_right_plus=136 neg_log10_pos_hash_p_value=31.9 new_junction_coverage=0.27 new_junction_read_count=114 polymorphism_frequency=2.092e-01 pos_hash_score=19 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=0 side_1_possible_overlap_registers=145 side_1_read_count=431 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=4 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=21 JC 102 . NC_000913 1907451 -1 NC_000913 2101749 1 0 alignment_overlap=0 coverage_minus=7 coverage_plus=9 flanking_left=151 flanking_right=151 frequency=7.143e-02 junction_possible_overlap_registers=149 key=NC_000913__1907451__-1__NC_000913__2101749__1__0____151__151__0__1 max_left=147 max_left_minus=147 max_left_plus=147 max_min_left=60 max_min_left_minus=49 max_min_left_plus=60 max_min_right=72 max_min_right_minus=49 max_min_right_plus=72 max_pos_hash_score=300 max_right=128 max_right_minus=128 max_right_plus=122 neg_log10_pos_hash_p_value=34.1 new_junction_coverage=0.08 new_junction_read_count=34 polymorphism_frequency=7.143e-02 pos_hash_score=16 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=442 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=16 JC 103 . NC_000913 1909925 1 NC_000913 2101749 1 0 alignment_overlap=1 coverage_minus=0 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=5.048e-02 junction_possible_overlap_registers=148 key=NC_000913__1909924__1__NC_000913__2101749__1__1____151__151__0__1 max_left=65 max_left_minus=0 max_left_plus=65 max_min_left=65 max_min_left_minus=0 max_min_left_plus=65 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=298 max_right=127 max_right_minus=0 max_right_plus=127 neg_log10_pos_hash_p_value=44.3 new_junction_coverage=0.05 new_junction_read_count=21 polymorphism_frequency=5.048e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.90 side_1_overlap=0 side_1_possible_overlap_registers=148 side_1_read_count=395 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=3 JC 104 . NC_000913 1978502 -1 NC_000913 1979279 1 0 alignment_overlap=8 coverage_minus=199 coverage_plus=191 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=141 key=NC_000913__1978502__-1__NC_000913__1979271__1__8____151__151__0__0 max_left=142 max_left_minus=141 max_left_plus=142 max_min_left=70 max_min_left_minus=67 max_min_left_plus=70 max_min_right=71 max_min_right_minus=71 max_min_right_plus=71 max_pos_hash_score=284 max_right=142 max_right_minus=141 max_right_plus=142 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=0.95 new_junction_read_count=395 polymorphism_frequency=1.000e+00 pos_hash_score=208 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=390 JC 105 . NC_000913 2066159 1 NC_000913 2413641 -1 0 alignment_overlap=4 coverage_minus=18 coverage_plus=10 flanking_left=151 flanking_right=151 frequency=4.209e-01 junction_possible_overlap_registers=145 key=NC_000913__2066156__1__NC_000913__2413642__-1__4____151__151__0__0 max_left=14 max_left_minus=14 max_left_plus=12 max_min_left=14 max_min_left_minus=14 max_min_left_plus=12 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=292 max_right=146 max_right_minus=145 max_right_plus=146 neg_log10_pos_hash_p_value=31.9 new_junction_coverage=0.45 new_junction_read_count=193 polymorphism_frequency=4.209e-01 pos_hash_score=19 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.62 side_2_overlap=3 side_2_possible_overlap_registers=148 side_2_read_count=271 side_2_redundant=0 total_non_overlap_reads=28 JC 106 . NC_000913 2067353 -1 NC_000913 2413638 1 0 alignment_overlap=0 coverage_minus=36 coverage_plus=28 flanking_left=151 flanking_right=151 frequency=3.831e-01 junction_possible_overlap_registers=149 key=NC_000913__2067353__-1__NC_000913__2413638__1__0____151__151__0__0 max_left=53 max_left_minus=52 max_left_plus=53 max_min_left=53 max_min_left_minus=52 max_min_left_plus=53 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=150 max_right_minus=150 max_right_plus=149 neg_log10_pos_hash_p_value=20.7 new_junction_coverage=0.39 new_junction_read_count=172 polymorphism_frequency=3.831e-01 pos_hash_score=48 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.63 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=277 side_2_redundant=0 total_non_overlap_reads=64 JC 107 . NC_000913 2067353 -1 NC_000913 3393816 1 0 alignment_overlap=4 coverage_minus=48 coverage_plus=36 flanking_left=151 flanking_right=151 frequency=4.246e-01 junction_possible_overlap_registers=145 key=NC_000913__2067357__-1__NC_000913__3393816__1__4____151__151__0__0 max_left=112 max_left_minus=49 max_left_plus=112 max_min_left=53 max_min_left_minus=49 max_min_left_plus=53 max_min_right=34 max_min_right_minus=0 max_min_right_plus=34 max_pos_hash_score=292 max_right=146 max_right_minus=145 max_right_plus=146 neg_log10_pos_hash_p_value=19.9 new_junction_coverage=0.50 new_junction_read_count=214 polymorphism_frequency=4.246e-01 pos_hash_score=49 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=4 side_2_possible_overlap_registers=149 side_2_read_count=298 side_2_redundant=0 total_non_overlap_reads=84 JC 108 . NC_000913 2101749 1 NC_000913 2174359 1 0 alignment_overlap=0 coverage_minus=0 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=5.894e-02 junction_possible_overlap_registers=149 key=NC_000913__2101749__1__NC_000913__2174359__1__0____151__151__1__0 max_left=138 max_left_minus=0 max_left_plus=138 max_min_left=65 max_min_left_minus=0 max_min_left_plus=65 max_min_right=71 max_min_right_minus=0 max_min_right_plus=71 max_pos_hash_score=300 max_right=84 max_right_minus=0 max_right_plus=84 neg_log10_pos_hash_p_value=44.4 new_junction_coverage=0.07 new_junction_read_count=31 polymorphism_frequency=5.894e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.12 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=495 side_2_redundant=0 total_non_overlap_reads=3 JC 109 . NC_000913 2174362 -1 NC_000913 2290113 -1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.698e-01 junction_possible_overlap_registers=149 key=NC_000913__2174362__-1__NC_000913__2290113__-1__0____151__151__0__1 max_left=114 max_left_minus=114 max_left_plus=25 max_min_left=36 max_min_left_minus=36 max_min_left_plus=25 max_min_right=37 max_min_right_minus=37 max_min_right_plus=0 max_pos_hash_score=300 max_right=141 max_right_minus=116 max_right_plus=141 neg_log10_pos_hash_p_value=42.3 new_junction_coverage=0.23 new_junction_read_count=100 polymorphism_frequency=1.698e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.11 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=489 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=5 JC 110 . NC_000913 2288919 1 NC_000913 2413641 -1 0 alignment_overlap=1 coverage_minus=116 coverage_plus=77 flanking_left=151 flanking_right=151 frequency=4.558e-01 junction_possible_overlap_registers=148 key=NC_000913__2288919__1__NC_000913__2413642__-1__1____151__151__1__0 max_left=140 max_left_minus=135 max_left_plus=140 max_min_left=74 max_min_left_minus=74 max_min_left_plus=74 max_min_right=74 max_min_right_minus=74 max_min_right_plus=70 max_pos_hash_score=298 max_right=149 max_right_minus=148 max_right_plus=149 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.52 new_junction_read_count=227 polymorphism_frequency=4.558e-01 pos_hash_score=132 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.62 side_2_overlap=0 side_2_possible_overlap_registers=148 side_2_read_count=271 side_2_redundant=0 total_non_overlap_reads=193 JC 111 . NC_000913 2288919 1 NC_000913 3393819 -1 0 alignment_overlap=0 coverage_minus=124 coverage_plus=119 flanking_left=151 flanking_right=151 frequency=4.960e-01 junction_possible_overlap_registers=149 key=NC_000913__2288919__1__NC_000913__3393819__-1__0____151__151__1__0 max_left=147 max_left_minus=146 max_left_plus=147 max_min_left=74 max_min_left_minus=74 max_min_left_plus=73 max_min_right=75 max_min_right_minus=75 max_min_right_plus=75 max_pos_hash_score=300 max_right=150 max_right_minus=150 max_right_plus=150 neg_log10_pos_hash_p_value=2.4 new_junction_coverage=0.71 new_junction_read_count=313 polymorphism_frequency=4.960e-01 pos_hash_score=157 prediction=polymorphism side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.72 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=318 side_2_redundant=0 total_non_overlap_reads=243 JC 112 . NC_000913 2290113 -1 NC_000913 2413638 1 0 alignment_overlap=0 coverage_minus=85 coverage_plus=91 flanking_left=151 flanking_right=151 frequency=5.149e-01 junction_possible_overlap_registers=149 key=NC_000913__2290113__-1__NC_000913__2413638__1__0____151__151__1__0 max_left=143 max_left_minus=143 max_left_plus=142 max_min_left=75 max_min_left_minus=75 max_min_left_plus=75 max_min_right=75 max_min_right_minus=74 max_min_right_plus=75 max_pos_hash_score=300 max_right=150 max_right_minus=150 max_right_plus=149 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.67 new_junction_read_count=294 polymorphism_frequency=5.149e-01 pos_hash_score=133 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.63 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=277 side_2_redundant=0 total_non_overlap_reads=176 JC 113 . NC_000913 2357873 -1 NC_000913 2357886 1 0 alignment_overlap=0 coverage_minus=24 coverage_plus=10 flanking_left=151 flanking_right=151 frequency=1.467e-01 junction_possible_overlap_registers=149 key=NC_000913__2357873__-1__NC_000913__2357886__1__0____151__151__0__0 max_left=62 max_left_minus=62 max_left_plus=13 max_min_left=62 max_min_left_minus=62 max_min_left_plus=13 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=148 max_right_minus=147 max_right_plus=148 neg_log10_pos_hash_p_value=28.5 new_junction_coverage=0.10 new_junction_read_count=46 polymorphism_frequency=1.467e-01 pos_hash_score=27 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.59 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=258 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.63 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=277 side_2_redundant=0 total_non_overlap_reads=34 JC 114 . NC_000913 2558698 -1 NC_000913 2565489 1 0 alignment_overlap=8 coverage_minus=4 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=1.303e-02 junction_possible_overlap_registers=141 key=NC_000913__2558698__-1__NC_000913__2565481__1__8____151__151__0__0 max_left=75 max_left_minus=75 max_left_plus=61 max_min_left=61 max_min_left_minus=45 max_min_left_plus=61 max_min_right=67 max_min_right_minus=67 max_min_right_plus=0 max_pos_hash_score=284 max_right=130 max_right_minus=130 max_right_plus=81 neg_log10_pos_hash_p_value=41.3 new_junction_coverage=0.01 new_junction_read_count=5 polymorphism_frequency=1.303e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.94 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=416 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.87 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=364 side_2_redundant=0 total_non_overlap_reads=5 JC 115 . NC_000913 2817783 1 NC_000913 2817922 -1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=1.212e-02 junction_possible_overlap_registers=129 key=NC_000913__2817783__1__NC_000913__2817942__-1__20____151__151__0__0 max_left=56 max_left_minus=56 max_left_plus=28 max_min_left=56 max_min_left_minus=56 max_min_left_plus=28 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=260 max_right=63 max_right_minus=63 max_right_plus=39 neg_log10_pos_hash_p_value=41.7 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=1.212e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=439 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.71 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=272 side_2_redundant=0 total_non_overlap_reads=3 JC 116 . NC_000913 2817942 -1 NC_000913 2818078 1 0 alignment_overlap=20 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.308e-02 junction_possible_overlap_registers=129 key=NC_000913__2817942__-1__NC_000913__2818058__1__20____151__151__0__0 max_left=63 max_left_minus=39 max_left_plus=63 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=56 max_min_right_minus=28 max_min_right_plus=56 max_pos_hash_score=260 max_right=56 max_right_minus=28 max_right_plus=56 neg_log10_pos_hash_p_value=41.7 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=1.308e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=307 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=338 side_2_redundant=0 total_non_overlap_reads=3 JC 117 . NC_000913 2817942 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=6 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=4.275e-02 junction_possible_overlap_registers=129 key=NC_000913__2817942__-1__NC_000913__2818472__1__20____151__151__0__0 max_left=63 max_left_minus=45 max_left_plus=63 max_min_left=45 max_min_left_minus=45 max_min_left_plus=2 max_min_right=56 max_min_right_minus=28 max_min_right_plus=56 max_pos_hash_score=260 max_right=114 max_right_minus=100 max_right_plus=114 neg_log10_pos_hash_p_value=35.3 new_junction_coverage=0.04 new_junction_read_count=15 polymorphism_frequency=4.275e-02 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=307 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.06 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=406 side_2_redundant=0 total_non_overlap_reads=10 JC 118 . NC_000913 2818357 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=5 coverage_plus=3 flanking_left=151 flanking_right=151 frequency=2.930e-02 junction_possible_overlap_registers=129 key=NC_000913__2818357__-1__NC_000913__2818472__1__20____151__151__0__0 max_left=36 max_left_minus=31 max_left_plus=36 max_min_left=36 max_min_left_minus=31 max_min_left_plus=36 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=260 max_right=114 max_right_minus=102 max_right_plus=114 neg_log10_pos_hash_p_value=37.8 new_junction_coverage=0.03 new_junction_read_count=11 polymorphism_frequency=2.930e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.85 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=373 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.06 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=406 side_2_redundant=0 total_non_overlap_reads=8 JC 119 . NC_000913 3366750 -1 NC_000913 3393816 1 0 alignment_overlap=0 coverage_minus=122 coverage_plus=97 flanking_left=151 flanking_right=151 frequency=4.269e-01 junction_possible_overlap_registers=149 key=NC_000913__3366750__-1__NC_000913__3393816__1__0____151__151__1__0 max_left=148 max_left_minus=148 max_left_plus=148 max_min_left=72 max_min_left_minus=72 max_min_left_plus=71 max_min_right=75 max_min_right_minus=74 max_min_right_plus=75 max_pos_hash_score=300 max_right=150 max_right_minus=149 max_right_plus=150 neg_log10_pos_hash_p_value=4.4 new_junction_coverage=0.50 new_junction_read_count=222 polymorphism_frequency=4.269e-01 pos_hash_score=135 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=298 side_2_redundant=0 total_non_overlap_reads=219 JC 120 . NC_000913 3583428 1 NC_000913 4434629 1 0 alignment_overlap=0 coverage_minus=3 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=8.299e-03 junction_possible_overlap_registers=149 key=NC_000913__3583428__1__NC_000913__4434629__1__0____151__151__1__0 max_left=116 max_left_minus=116 max_left_plus=81 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=70 max_min_right_minus=50 max_min_right_plus=70 max_pos_hash_score=300 max_right=70 max_right_minus=50 max_right_plus=70 neg_log10_pos_hash_p_value=44.4 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=8.299e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.09 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=478 side_2_redundant=0 total_non_overlap_reads=4 JC 121 . NC_000913 3584195 -1 NC_000913 4542042 1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=7.181e-03 junction_possible_overlap_registers=149 key=NC_000913__3584195__-1__NC_000913__4542042__1__0____151__151__1__0 max_left=101 max_left_minus=101 max_left_plus=42 max_min_left=42 max_min_left_minus=6 max_min_left_plus=42 max_min_right=50 max_min_right_minus=50 max_min_right_plus=0 max_pos_hash_score=300 max_right=145 max_right_minus=145 max_right_plus=108 neg_log10_pos_hash_p_value=44.4 new_junction_coverage=0.01 new_junction_read_count=4 polymorphism_frequency=7.181e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.26 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=553 side_2_redundant=0 total_non_overlap_reads=3 JC 122 . NC_000913 3652036 1 NC_000913 4536149 -1 0 alignment_overlap=0 coverage_minus=4 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=5.566e-02 junction_possible_overlap_registers=149 key=NC_000913__3652036__1__NC_000913__4536149__-1__0____151__151__1__0 max_left=129 max_left_minus=129 max_left_plus=107 max_min_left=73 max_min_left_minus=56 max_min_left_plus=73 max_min_right=53 max_min_right_minus=53 max_min_right_plus=41 max_pos_hash_score=300 max_right=147 max_right_minus=95 max_right_plus=147 neg_log10_pos_hash_p_value=39.6 new_junction_coverage=0.07 new_junction_read_count=30 polymorphism_frequency=5.566e-02 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.16 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=509 side_2_redundant=0 total_non_overlap_reads=8 JC 123 . NC_000913 3652935 -1 NC_000913 4043718 -1 0 alignment_overlap=10 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=6.587e-03 junction_possible_overlap_registers=139 key=NC_000913__3652945__-1__NC_000913__4043718__-1__10____151__151__1__0 max_left=78 max_left_minus=78 max_left_plus=74 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=66 max_min_right_minus=63 max_min_right_plus=66 max_pos_hash_score=280 max_right=140 max_right_minus=63 max_right_plus=140 neg_log10_pos_hash_p_value=43.1 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=6.587e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.10 side_2_overlap=10 side_2_possible_overlap_registers=149 side_2_read_count=485 side_2_redundant=0 total_non_overlap_reads=3 JC 124 . NC_000913 3653230 -1 NC_000913 4536146 1 0 alignment_overlap=1 coverage_minus=7 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=4.945e-02 junction_possible_overlap_registers=148 key=NC_000913__3653230__-1__NC_000913__4536145__1__1____151__151__1__0 max_left=147 max_left_minus=147 max_left_plus=147 max_min_left=56 max_min_left_minus=56 max_min_left_plus=0 max_min_right=25 max_min_right_minus=25 max_min_right_plus=3 max_pos_hash_score=298 max_right=127 max_right_minus=127 max_right_plus=3 neg_log10_pos_hash_p_value=39.5 new_junction_coverage=0.06 new_junction_read_count=27 polymorphism_frequency=4.945e-02 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.19 side_2_overlap=0 side_2_possible_overlap_registers=148 side_2_read_count=519 side_2_redundant=0 total_non_overlap_reads=9 JC 125 . NC_000913 3815858 -1 NC_000913 3815941 1 0 alignment_overlap=10 coverage_minus=3 coverage_plus=10 flanking_left=151 flanking_right=151 frequency=2.747e-02 junction_possible_overlap_registers=139 key=NC_000913__3815858__-1__NC_000913__3815931__1__10____151__151__0__0 max_left=129 max_left_minus=95 max_left_plus=129 max_min_left=51 max_min_left_minus=46 max_min_left_plus=51 max_min_right=62 max_min_right_minus=62 max_min_right_plus=55 max_pos_hash_score=280 max_right=140 max_right_minus=94 max_right_plus=140 neg_log10_pos_hash_p_value=35.3 new_junction_coverage=0.03 new_junction_read_count=13 polymorphism_frequency=2.747e-02 pos_hash_score=12 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.13 side_1_overlap=10 side_1_possible_overlap_registers=149 side_1_read_count=498 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=139 side_2_read_count=456 side_2_redundant=0 total_non_overlap_reads=13 JC 126 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=39 coverage_plus=29 flanking_left=151 flanking_right=151 frequency=1.292e-01 junction_possible_overlap_registers=140 key=NC_000913__4542682__1__NC_000913__4542987__1__9____151__151__0__0 max_left=139 max_left_minus=139 max_left_plus=138 max_min_left=70 max_min_left_minus=70 max_min_left_plus=67 max_min_right=70 max_min_right_minus=66 max_min_right_plus=70 max_pos_hash_score=282 max_right=137 max_right_minus=130 max_right_plus=137 neg_log10_pos_hash_p_value=15.8 new_junction_coverage=0.16 new_junction_read_count=68 polymorphism_frequency=1.292e-01 pos_hash_score=61 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.08 side_1_overlap=9 side_1_possible_overlap_registers=149 side_1_read_count=476 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=140 side_2_read_count=469 side_2_redundant=0 total_non_overlap_reads=68 JC 127 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=42 coverage_plus=24 flanking_left=151 flanking_right=151 frequency=1.271e-01 junction_possible_overlap_registers=140 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____151__151__0__0 max_left=139 max_left_minus=137 max_left_plus=139 max_min_left=67 max_min_left_minus=67 max_min_left_plus=54 max_min_right=71 max_min_right_minus=71 max_min_right_plus=64 max_pos_hash_score=282 max_right=139 max_right_minus=139 max_right_plus=117 neg_log10_pos_hash_p_value=16.1 new_junction_coverage=0.16 new_junction_read_count=66 polymorphism_frequency=1.271e-01 pos_hash_score=60 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.06 side_1_overlap=9 side_1_possible_overlap_registers=149 side_1_read_count=469 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=140 side_2_read_count=466 side_2_redundant=0 total_non_overlap_reads=66 UN 128 . 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