#=GENOME_DIFF 1.0 #=AUTHOR breseq 0.27.1 revision 87c22d663cc3 #=CREATED 06:59:51 21 Apr 2016 #=COMMAND breseq -j 8 -r NC_000913_3.gb -o ALE-IL10 ALE-IL10_S14_L003_R1_001.fastq.gz ALE-IL10_S14_L001_R1_001.fastq.gz ALE-IL10_S14_L002_R1_001.fastq.gz ALE-IL10_S14_L004_R2_001.fastq.gz ALE-IL10_S14_L004_R1_001.fastq.gz ALE-IL10_S14_L003_R2_001.fastq.gz ALE-IL10_S14_L001_R2_001.fastq.gz ALE-IL10_S14_L002_R2_001.fastq.gz #=REFSEQ NC_000913_3.gb #=READSEQ ALE-IL10_S14_L003_R1_001.fastq.gz #=READSEQ ALE-IL10_S14_L001_R1_001.fastq.gz #=READSEQ ALE-IL10_S14_L002_R1_001.fastq.gz #=READSEQ ALE-IL10_S14_L004_R2_001.fastq.gz #=READSEQ ALE-IL10_S14_L004_R1_001.fastq.gz #=READSEQ ALE-IL10_S14_L003_R2_001.fastq.gz #=READSEQ ALE-IL10_S14_L001_R2_001.fastq.gz #=READSEQ ALE-IL10_S14_L002_R2_001.fastq.gz DEL 1 72,77 NC_000913 257908 776 SNP 2 25 NC_000913 962358 C SNP 3 26 NC_000913 1151759 A DEL 4 29 NC_000913 1307744 1 DEL 5 73,101 NC_000913 1673557 120 DEL 6 102 NC_000913 1674769 12 DEL 7 74,104 NC_000913 1978503 776 DEL 8 38,39 NC_000913 2173363 2 SNP 9 41 NC_000913 2278051 A SNP 10 44 NC_000913 2610107 A SNP 11 51 NC_000913 3006058 C INS 12 53 NC_000913 3247487 A INS 13 116 NC_000913 3395612 TGGAGCC repeat_length=7 repeat_new_copies=2 repeat_ref_copies=1 repeat_seq=TGGAGCC DEL 14 59 NC_000913 3473622 1 INS 15 60 NC_000913 3560455 G SNP 16 62 NC_000913 4187667 A SNP 17 63 NC_000913 4213051 C INS 18 65,66 NC_000913 4296381 GC RA 19 . NC_000913 422429 0 T G bias_e_value=5.76591e-35 bias_p_value=1.24221e-41 consensus_score=587.3 fisher_strand_p_value=1.2448e-43 frequency=2.991e-01 ks_quality_p_value=1 major_base=T major_cov=58/188 major_frequency=7.009e-01 minor_base=G minor_cov=103/2 new_cov=103/2 polymorphism_frequency=2.991e-01 polymorphism_score=107.1 prediction=polymorphism ref_cov=58/188 total_cov=164/190 RA 20 . NC_000913 422432 0 T G bias_e_value=1.78809e-29 bias_p_value=3.85227e-36 consensus_score=767.2 fisher_strand_p_value=4.42736e-38 frequency=2.500e-01 ks_quality_p_value=1 major_base=T major_cov=74/190 major_frequency=7.500e-01 minor_base=G minor_cov=88/0 new_cov=88/0 polymorphism_frequency=2.500e-01 polymorphism_score=61.3 prediction=polymorphism ref_cov=74/190 total_cov=164/190 RA 21 . NC_000913 422435 0 T G bias_e_value=3.03519e-22 bias_p_value=6.53903e-29 consensus_score=795.4 fisher_strand_p_value=9.3218e-31 frequency=2.102e-01 ks_quality_p_value=1 major_base=T major_cov=88/190 major_frequency=7.898e-01 minor_base=G minor_cov=74/0 new_cov=74/0 polymorphism_frequency=2.102e-01 polymorphism_score=51.0 prediction=polymorphism ref_cov=88/190 total_cov=164/190 RA 22 . NC_000913 423552 0 T G bias_e_value=2.17875e-28 bias_p_value=4.69392e-35 consensus_score=584.6 fisher_strand_p_value=5.5562e-37 frequency=2.648e-01 ks_quality_p_value=1 major_base=T major_cov=172/64 major_frequency=7.352e-01 minor_base=G minor_cov=0/85 new_cov=0/85 polymorphism_frequency=2.648e-01 polymorphism_score=84.2 prediction=polymorphism ref_cov=172/64 total_cov=173/149 RA 23 . NC_000913 696534 0 G T bias_e_value=697297 bias_p_value=0.150226 consensus_score=255.1 fisher_strand_p_value=0.0343728 frequency=2.537e-01 ks_quality_p_value=1 major_base=G major_cov=39/61 major_frequency=7.463e-01 minor_base=T minor_cov=6/28 new_cov=6/28 polymorphism_frequency=2.537e-01 polymorphism_score=49.1 prediction=polymorphism ref_cov=39/61 total_cov=45/89 RA 24 . NC_000913 915213 0 A C bias_e_value=4043880 bias_p_value=0.871216 consensus_score=277.5 fisher_strand_p_value=0.537535 frequency=2.042e-01 ks_quality_p_value=1 major_base=A major_cov=136/16 major_frequency=7.958e-01 minor_base=C minor_cov=37/2 new_cov=37/2 polymorphism_frequency=2.042e-01 polymorphism_score=21.1 prediction=polymorphism ref_cov=136/16 total_cov=180/26 RA 25 . NC_000913 962358 0 G C bias_e_value=2293570 bias_p_value=0.494127 consensus_score=1515.9 fisher_strand_p_value=0.189204 frequency=1 ks_quality_p_value=0.96828 major_base=C major_cov=207/178 major_frequency=9.872e-01 minor_base=G minor_cov=1/4 new_cov=207/178 polymorphism_frequency=9.872e-01 polymorphism_score=4.1 prediction=consensus ref_cov=1/4 total_cov=208/182 RA 26 . NC_000913 1151759 0 G A bias_e_value=3926550 bias_p_value=0.845938 consensus_score=1401.2 fisher_strand_p_value=0.499084 frequency=1 ks_quality_p_value=1 major_base=A major_cov=178/187 major_frequency=9.946e-01 minor_base=T minor_cov=0/2 new_cov=178/187 polymorphism_frequency=9.946e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=179/190 RA 27 . NC_000913 1286965 0 A C bias_e_value=722298 bias_p_value=0.155612 consensus_score=267.7 fisher_strand_p_value=0.0359819 frequency=2.020e-01 ks_quality_p_value=1 major_base=A major_cov=72/90 major_frequency=7.980e-01 minor_base=C minor_cov=26/15 new_cov=26/15 polymorphism_frequency=2.020e-01 polymorphism_score=33.6 prediction=polymorphism ref_cov=72/90 total_cov=123/125 RA 28 . NC_000913 1287217 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=757.9 fisher_strand_p_value=1 frequency=2.115e-01 ks_quality_p_value=1 major_base=G major_cov=155/132 major_frequency=7.885e-01 minor_base=T minor_cov=42/35 new_cov=42/35 polymorphism_frequency=2.115e-01 polymorphism_score=101.9 prediction=polymorphism ref_cov=155/132 total_cov=199/169 RA 29 . NC_000913 1307743 0 T . bias_e_value=4641650 bias_p_value=1 consensus_score=1465.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=150/165 major_frequency=9.968e-01 minor_base=T minor_cov=0/1 new_cov=150/165 polymorphism_frequency=9.968e-01 polymorphism_score=-1.7 prediction=consensus ref_cov=0/1 total_cov=152/166 RA 30 . NC_000913 1308745 0 T G bias_e_value=3.34448e-13 bias_p_value=7.20537e-20 consensus_score=693.0 fisher_strand_p_value=1.47144e-21 frequency=2.052e-01 ks_quality_p_value=1 major_base=T major_cov=186/89 major_frequency=7.948e-01 minor_base=G minor_cov=5/66 new_cov=5/66 polymorphism_frequency=2.052e-01 polymorphism_score=52.1 prediction=polymorphism ref_cov=186/89 total_cov=192/156 RA 31 . NC_000913 1552191 0 C A bias_e_value=8.64039e-12 bias_p_value=1.86149e-18 consensus_score=924.9 fisher_strand_p_value=4.07809e-20 frequency=2.539e-01 ks_quality_p_value=1 major_base=C major_cov=117/215 major_frequency=7.461e-01 minor_base=A minor_cov=95/18 new_cov=95/18 polymorphism_frequency=2.539e-01 polymorphism_score=86.9 prediction=polymorphism ref_cov=117/215 total_cov=222/234 RA 32 . NC_000913 1708697 0 C A bias_e_value=10405.4 bias_p_value=0.00224174 consensus_score=475.6 fisher_strand_p_value=0.000240165 frequency=2.137e-01 ks_quality_p_value=1 major_base=C major_cov=56/150 major_frequency=7.863e-01 minor_base=A minor_cov=3/53 new_cov=3/53 polymorphism_frequency=2.137e-01 polymorphism_score=44.6 prediction=polymorphism ref_cov=56/150 total_cov=65/205 RA 33 . NC_000913 1708781 0 C G bias_e_value=6034.48 bias_p_value=0.00130007 consensus_score=159.6 fisher_strand_p_value=0.000130764 frequency=2.128e-01 ks_quality_p_value=1 major_base=C major_cov=40/71 major_frequency=7.872e-01 minor_base=G minor_cov=23/7 new_cov=23/7 polymorphism_frequency=2.128e-01 polymorphism_score=24.8 prediction=polymorphism ref_cov=40/71 total_cov=76/87 RA 34 . NC_000913 1708805 0 T A bias_e_value=1368550 bias_p_value=0.29484 consensus_score=101.3 fisher_strand_p_value=0.0851243 frequency=2.564e-01 ks_quality_p_value=1 major_base=T major_cov=47/40 major_frequency=7.436e-01 minor_base=A minor_cov=22/8 new_cov=22/8 polymorphism_frequency=2.564e-01 polymorphism_score=38.3 prediction=polymorphism ref_cov=47/40 total_cov=92/64 RA 35 . NC_000913 1708901 0 A C bias_e_value=10561.2 bias_p_value=0.0022753 consensus_score=305.5 fisher_strand_p_value=0.000244196 frequency=2.806e-01 ks_quality_p_value=1 major_base=A major_cov=128/54 major_frequency=7.194e-01 minor_base=C minor_cov=65/6 new_cov=65/6 polymorphism_frequency=2.806e-01 polymorphism_score=54.7 prediction=polymorphism ref_cov=128/54 total_cov=193/68 RA 36 . NC_000913 1708910 0 G C bias_e_value=3804300 bias_p_value=0.819601 consensus_score=469.0 fisher_strand_p_value=0.463102 frequency=2.294e-01 ks_quality_p_value=1 major_base=G major_cov=135/43 major_frequency=7.706e-01 minor_base=C minor_cov=43/10 new_cov=43/10 polymorphism_frequency=2.294e-01 polymorphism_score=28.5 prediction=polymorphism ref_cov=135/43 total_cov=186/60 RA 37 . NC_000913 1708930 0 C A bias_e_value=3885880 bias_p_value=0.837176 consensus_score=476.6 fisher_strand_p_value=0.4867 frequency=2.590e-01 ks_quality_p_value=1 major_base=C major_cov=148/38 major_frequency=7.410e-01 minor_base=A minor_cov=49/16 new_cov=49/16 polymorphism_frequency=2.590e-01 polymorphism_score=67.0 prediction=polymorphism ref_cov=148/38 total_cov=197/55 RA 38 . NC_000913 2173361 0 C . bias_e_value=4213140 bias_p_value=0.907681 consensus_score=1489.3 fisher_strand_p_value=0.621473 frequency=1 ks_quality_p_value=0.969195 major_base=. major_cov=160/157 major_frequency=9.906e-01 minor_base=C minor_cov=1/2 new_cov=160/157 polymorphism_frequency=9.906e-01 polymorphism_score=7.0 prediction=consensus ref_cov=1/2 total_cov=161/159 RA 39 . NC_000913 2173362 0 C . bias_e_value=2753910 bias_p_value=0.593303 consensus_score=1485.6 fisher_strand_p_value=0.247649 frequency=1 ks_quality_p_value=1 major_base=. major_cov=160/157 major_frequency=9.937e-01 minor_base=C minor_cov=0/2 new_cov=160/157 polymorphism_frequency=9.937e-01 polymorphism_score=1.8 prediction=consensus ref_cov=0/2 total_cov=161/159 RA 40 . NC_000913 2229190 0 T G bias_e_value=301229 bias_p_value=0.064897 consensus_score=289.2 fisher_strand_p_value=0.01196 frequency=2.105e-01 ks_quality_p_value=1 major_base=T major_cov=27/138 major_frequency=7.895e-01 minor_base=G minor_cov=1/43 new_cov=1/43 polymorphism_frequency=2.105e-01 polymorphism_score=21.6 prediction=polymorphism ref_cov=27/138 total_cov=35/185 RA 41 . NC_000913 2278051 0 G A bias_e_value=3863320 bias_p_value=0.832316 consensus_score=1252.2 fisher_strand_p_value=0.491514 frequency=1 ks_quality_p_value=0.976606 major_base=A major_cov=161/173 major_frequency=9.766e-01 minor_base=G minor_cov=5/3 new_cov=161/173 polymorphism_frequency=9.766e-01 polymorphism_score=10.2 prediction=consensus ref_cov=5/3 total_cov=166/177 RA 42 . NC_000913 2304842 0 C A bias_e_value=1.1062e-06 bias_p_value=2.3832e-13 consensus_score=377.7 fisher_strand_p_value=7.09729e-15 frequency=2.045e-01 ks_quality_p_value=1 major_base=C major_cov=93/117 major_frequency=7.955e-01 minor_base=A minor_cov=53/1 new_cov=53/1 polymorphism_frequency=2.045e-01 polymorphism_score=12.1 prediction=polymorphism ref_cov=93/117 total_cov=158/120 RA 43 . NC_000913 2560996 0 G T bias_e_value=195213 bias_p_value=0.0420568 consensus_score=643.2 fisher_strand_p_value=0.00706534 frequency=2.158e-01 ks_quality_p_value=1 major_base=G major_cov=143/115 major_frequency=7.842e-01 minor_base=T minor_cov=26/45 new_cov=26/45 polymorphism_frequency=2.158e-01 polymorphism_score=56.8 prediction=polymorphism ref_cov=143/115 total_cov=169/161 RA 44 . NC_000913 2610107 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=1356.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=134/221 major_frequency=9.972e-01 minor_base=C minor_cov=0/1 new_cov=134/221 polymorphism_frequency=9.972e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=134/222 RA 45 . NC_000913 2818145 0 T C bias_e_value=102.331 bias_p_value=2.20463e-05 consensus_score=259.9 fisher_strand_p_value=0.000235407 frequency=2.959e-01 ks_quality_p_value=0.00650867 major_base=T major_cov=54/65 major_frequency=7.041e-01 minor_base=C minor_cov=8/42 new_cov=8/42 polymorphism_frequency=2.959e-01 polymorphism_score=141.7 prediction=polymorphism ref_cov=54/65 total_cov=89/109 RA 46 . NC_000913 2818149 0 T C bias_e_value=0.182593 bias_p_value=3.93379e-08 consensus_score=301.8 fisher_strand_p_value=6.20763e-06 frequency=2.303e-01 ks_quality_p_value=0.000300328 major_base=T major_cov=60/67 major_frequency=7.697e-01 minor_base=C minor_cov=3/35 new_cov=3/35 polymorphism_frequency=2.303e-01 polymorphism_score=105.5 prediction=polymorphism ref_cov=60/67 total_cov=87/104 RA 47 . NC_000913 2818158 0 T A bias_e_value=1596610 bias_p_value=0.343974 consensus_score=286.5 fisher_strand_p_value=0.109867 frequency=2.428e-01 ks_quality_p_value=0.965113 major_base=T major_cov=63/68 major_frequency=7.572e-01 minor_base=A minor_cov=14/28 new_cov=14/28 polymorphism_frequency=2.428e-01 polymorphism_score=85.5 prediction=polymorphism ref_cov=63/68 total_cov=78/96 RA 48 . NC_000913 2947465 0 T . bias_e_value=2384150 bias_p_value=0.513643 consensus_score=382.6 fisher_strand_p_value=0.595066 frequency=2.483e-01 ks_quality_p_value=0.327557 major_base=T major_cov=18/94 major_frequency=7.517e-01 minor_base=. minor_cov=4/33 new_cov=4/33 polymorphism_frequency=2.483e-01 polymorphism_score=132.2 prediction=polymorphism ref_cov=18/94 total_cov=23/127 RA 49 . NC_000913 2947467 0 A C bias_e_value=4408170 bias_p_value=0.949699 consensus_score=207.0 fisher_strand_p_value=0.703938 frequency=3.130e-01 ks_quality_p_value=0.994512 major_base=A major_cov=5/74 major_frequency=6.870e-01 minor_base=C minor_cov=3/33 new_cov=3/33 polymorphism_frequency=3.130e-01 polymorphism_score=122.6 prediction=polymorphism ref_cov=5/74 total_cov=9/107 RA 50 . NC_000913 2947591 0 A . bias_e_value=356110 bias_p_value=0.0767205 consensus_score=227.2 fisher_strand_p_value=0.0146971 frequency=3.960e-01 ks_quality_p_value=1 major_base=A major_cov=60/1 major_frequency=6.040e-01 minor_base=. minor_cov=34/6 new_cov=34/6 polymorphism_frequency=3.960e-01 polymorphism_score=154.5 prediction=polymorphism ref_cov=60/1 total_cov=94/7 RA 51 . NC_000913 3006058 0 T C bias_e_value=4495310 bias_p_value=0.968472 consensus_score=1543.3 fisher_strand_p_value=0.759637 frequency=1 ks_quality_p_value=1 major_base=C major_cov=225/184 major_frequency=9.761e-01 minor_base=T minor_cov=5/5 new_cov=225/184 polymorphism_frequency=9.761e-01 polymorphism_score=9.7 prediction=consensus ref_cov=5/5 total_cov=236/189 RA 52 . NC_000913 3233696 0 A C bias_e_value=3.37687e-26 bias_p_value=7.27515e-33 consensus_score=839.3 fisher_strand_p_value=9.16554e-35 frequency=2.012e-01 ks_quality_p_value=1 major_base=A major_cov=202/56 major_frequency=7.988e-01 minor_base=C minor_cov=0/65 new_cov=0/65 polymorphism_frequency=2.012e-01 polymorphism_score=41.8 prediction=polymorphism ref_cov=202/56 total_cov=202/122 RA 53 . NC_000913 3247486 1 . A consensus_score=1484.7 frequency=1 major_base=A major_cov=193/196 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=193/196 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=193/196 RA 54 . NC_000913 3269994 0 G T bias_e_value=793149 bias_p_value=0.170876 consensus_score=209.5 fisher_strand_p_value=0.0406607 frequency=2.632e-01 ks_quality_p_value=1 major_base=G major_cov=21/91 major_frequency=7.368e-01 minor_base=T minor_cov=2/38 new_cov=2/38 polymorphism_frequency=2.632e-01 polymorphism_score=21.0 prediction=polymorphism ref_cov=21/91 total_cov=23/157 RA 55 . NC_000913 3270151 0 A C bias_e_value=49.725 bias_p_value=1.07128e-05 consensus_score=220.8 fisher_strand_p_value=7.06511e-07 frequency=2.234e-01 ks_quality_p_value=1 major_base=A major_cov=82/64 major_frequency=7.766e-01 minor_base=C minor_cov=40/2 new_cov=40/2 polymorphism_frequency=2.234e-01 polymorphism_score=21.9 prediction=polymorphism ref_cov=82/64 total_cov=133/69 RA 56 . NC_000913 3270163 0 C A bias_e_value=8342.62 bias_p_value=0.00179734 consensus_score=345.3 fisher_strand_p_value=0.000187589 frequency=2.330e-01 ks_quality_p_value=1 major_base=C major_cov=85/73 major_frequency=7.670e-01 minor_base=A minor_cov=40/8 new_cov=40/8 polymorphism_frequency=2.330e-01 polymorphism_score=19.1 prediction=polymorphism ref_cov=85/73 total_cov=151/83 RA 57 . NC_000913 3270167 0 C G bias_e_value=0.00350829 bias_p_value=7.55829e-10 consensus_score=386.6 fisher_strand_p_value=2.9956e-11 frequency=2.029e-01 ks_quality_p_value=1 major_base=C major_cov=83/82 major_frequency=7.971e-01 minor_base=G minor_cov=42/0 new_cov=42/0 polymorphism_frequency=2.029e-01 polymorphism_score=28.6 prediction=polymorphism ref_cov=83/82 total_cov=161/90 RA 58 . NC_000913 3270175 0 C A bias_e_value=716788 bias_p_value=0.154425 consensus_score=478.5 fisher_strand_p_value=0.0356254 frequency=2.056e-01 ks_quality_p_value=1 major_base=C major_cov=113/84 major_frequency=7.944e-01 minor_base=A minor_cov=38/13 new_cov=38/13 polymorphism_frequency=2.056e-01 polymorphism_score=18.0 prediction=polymorphism ref_cov=113/84 total_cov=173/100 RA 59 . NC_000913 3473622 0 A . bias_e_value=4344770 bias_p_value=0.93604 consensus_score=1957.3 fisher_strand_p_value=0.705023 frequency=1 ks_quality_p_value=0.942332 major_base=. major_cov=187/235 major_frequency=9.837e-01 minor_base=A minor_cov=4/3 new_cov=187/235 polymorphism_frequency=9.837e-01 polymorphism_score=24.6 prediction=consensus ref_cov=4/3 total_cov=192/238 RA 60 . NC_000913 3560455 1 . G bias_e_value=4475880 bias_p_value=0.964287 consensus_score=1459.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.744933 major_base=G major_cov=175/205 major_frequency=9.974e-01 minor_base=A minor_cov=0/1 new_cov=175/205 polymorphism_frequency=9.974e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/0 total_cov=175/207 RA 61 . NC_000913 3781032 0 T G bias_e_value=2.0622e-28 bias_p_value=4.44281e-35 consensus_score=638.9 fisher_strand_p_value=5.2555e-37 frequency=2.315e-01 ks_quality_p_value=1 major_base=T major_cov=46/183 major_frequency=7.685e-01 minor_base=G minor_cov=69/0 new_cov=69/0 polymorphism_frequency=2.315e-01 polymorphism_score=58.5 prediction=polymorphism ref_cov=46/183 total_cov=136/185 RA 62 . NC_000913 4187667 0 T A bias_e_value=4618970 bias_p_value=0.995113 consensus_score=1606.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.902778 major_base=A major_cov=197/221 major_frequency=9.952e-01 minor_base=T minor_cov=1/1 new_cov=197/221 polymorphism_frequency=9.952e-01 polymorphism_score=-3.2 prediction=consensus ref_cov=1/1 total_cov=199/222 RA 63 . NC_000913 4213051 0 A C consensus_score=277.0 frequency=1 major_base=C major_cov=44/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/36 RA 64 . NC_000913 4296060 0 C T bias_e_value=0.000429731 bias_p_value=9.25814e-11 consensus_score=822.5 fisher_strand_p_value=1 frequency=2.224e-01 ks_quality_p_value=3.37716e-12 major_base=C major_cov=197/198 major_frequency=7.776e-01 minor_base=T minor_cov=57/56 new_cov=57/56 polymorphism_frequency=2.224e-01 polymorphism_score=305.7 prediction=polymorphism ref_cov=197/198 total_cov=272/263 RA 65 . NC_000913 4296380 1 . C bias_e_value=3912560 bias_p_value=0.842923 consensus_score=1019.3 fisher_strand_p_value=0.494774 frequency=1 ks_quality_p_value=1 major_base=C major_cov=145/141 major_frequency=9.965e-01 minor_base=G minor_cov=0/1 new_cov=145/141 polymorphism_frequency=9.965e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=146/142 RA 66 . NC_000913 4296380 2 . G bias_e_value=3912560 bias_p_value=0.842923 consensus_score=1014.2 fisher_strand_p_value=0.494774 frequency=1 ks_quality_p_value=1 major_base=G major_cov=145/141 major_frequency=9.965e-01 minor_base=T minor_cov=0/1 new_cov=145/141 polymorphism_frequency=9.965e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=146/142 RA 67 . NC_000913 4392452 0 G C bias_e_value=78.034 bias_p_value=1.68117e-05 consensus_score=379.3 fisher_strand_p_value=1.14522e-06 frequency=2.147e-01 ks_quality_p_value=1 major_base=G major_cov=50/100 major_frequency=7.853e-01 minor_base=C minor_cov=0/41 new_cov=0/41 polymorphism_frequency=2.147e-01 polymorphism_score=26.4 prediction=polymorphism ref_cov=50/100 total_cov=53/173 RA 68 . NC_000913 4392457 0 G T bias_e_value=16386 bias_p_value=0.00353022 consensus_score=392.2 fisher_strand_p_value=0.000400077 frequency=2.183e-01 ks_quality_p_value=1 major_base=G major_cov=51/103 major_frequency=7.817e-01 minor_base=T minor_cov=3/40 new_cov=3/40 polymorphism_frequency=2.183e-01 polymorphism_score=10.8 prediction=polymorphism ref_cov=51/103 total_cov=55/174 RA 69 . NC_000913 4392567 0 G T bias_e_value=42727.9 bias_p_value=0.00920532 consensus_score=447.5 fisher_strand_p_value=0.00119031 frequency=2.000e-01 ks_quality_p_value=1 major_base=G major_cov=113/59 major_frequency=8.000e-01 minor_base=T minor_cov=39/4 new_cov=39/4 polymorphism_frequency=2.000e-01 polymorphism_score=35.7 prediction=polymorphism ref_cov=113/59 total_cov=155/77 RA 70 . NC_000913 4412781 0 C G bias_e_value=2.10451e-22 bias_p_value=4.53396e-29 consensus_score=880.4 fisher_strand_p_value=6.42939e-31 frequency=2.089e-01 ks_quality_p_value=1 major_base=C major_cov=91/193 major_frequency=7.911e-01 minor_base=G minor_cov=75/0 new_cov=75/0 polymorphism_frequency=2.089e-01 polymorphism_score=59.3 prediction=polymorphism ref_cov=91/193 total_cov=172/193 RA 71 . NC_000913 4606192 0 G C bias_e_value=110005 bias_p_value=0.0236995 consensus_score=116.7 fisher_strand_p_value=0.0035721 frequency=2.639e-01 ks_quality_p_value=1 major_base=G major_cov=17/36 major_frequency=7.361e-01 minor_base=C minor_cov=0/19 new_cov=0/19 polymorphism_frequency=2.639e-01 polymorphism_score=14.6 prediction=polymorphism ref_cov=17/36 total_cov=17/61 MC 72 . NC_000913 257908 258683 768 0 left_inside_cov=1 left_outside_cov=470 right_inside_cov=0 right_outside_cov=463 MC 73 . NC_000913 1673557 1673676 0 0 left_inside_cov=0 left_outside_cov=426 right_inside_cov=0 right_outside_cov=424 MC 74 . NC_000913 1978503 1979278 767 0 left_inside_cov=1 left_outside_cov=438 right_inside_cov=0 right_outside_cov=436 MC 75 . NC_000913 3423677 3424569 557 331 left_inside_cov=284 left_outside_cov=292 right_inside_cov=290 right_outside_cov=293 JC 76 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 circular_chromosome=1 coverage_minus=224 coverage_plus=224 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=149 key=NC_000913__1__1__NC_000913__4641652__-1__0____151__151__0__0 max_left=150 max_left_minus=150 max_left_plus=149 max_min_left=75 max_min_left_minus=75 max_min_left_plus=75 max_min_right=75 max_min_right_minus=75 max_min_right_plus=75 max_pos_hash_score=300 max_right=148 max_right_minus=148 max_right_plus=147 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.07 new_junction_read_count=453 polymorphism_frequency=1.000e+00 pos_hash_score=219 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=448 JC 77 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=218 coverage_plus=212 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=141 key=NC_000913__257907__-1__NC_000913__258676__1__8____151__151__0__0 max_left=141 max_left_minus=139 max_left_plus=141 max_min_left=71 max_min_left_minus=71 max_min_left_plus=71 max_min_right=70 max_min_right_minus=70 max_min_right_plus=70 max_pos_hash_score=284 max_right=142 max_right_minus=142 max_right_plus=142 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.08 new_junction_read_count=433 polymorphism_frequency=9.989e-01 pos_hash_score=210 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=430 JC 78 . NC_000913 696863 1 NC_000913 697134 -1 -12 alignment_overlap=-12 coverage_minus=31 coverage_plus=21 flanking_left=151 flanking_right=151 frequency=2.654e-01 junction_possible_overlap_registers=137 key=NC_000913__696863__1__NC_000913__697134__-1__-12__GAAGAAACAATC__151__151__0__0 max_left=137 max_left_minus=137 max_left_plus=134 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=58 max_min_right_minus=55 max_min_right_plus=58 max_pos_hash_score=276 max_right=58 max_right_minus=55 max_right_plus=58 neg_log10_pos_hash_p_value=31.7 new_junction_coverage=0.23 new_junction_read_count=91 polymorphism_frequency=2.654e-01 pos_hash_score=38 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.35 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=146 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=402 side_2_redundant=0 total_non_overlap_reads=52 unique_read_sequence=GAAGAAACAATC JC 79 . NC_000913 780554 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=28 coverage_plus=23 flanking_left=151 flanking_right=151 frequency=2.308e-01 junction_possible_overlap_registers=145 key=NC_000913__780554__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=67 max_left_minus=67 max_left_plus=57 max_min_left=67 max_min_left_minus=67 max_min_left_plus=57 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=292 max_right=144 max_right_minus=144 max_right_plus=143 neg_log10_pos_hash_p_value=31.1 new_junction_coverage=0.23 new_junction_read_count=94 polymorphism_frequency=2.308e-01 pos_hash_score=43 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.10 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=464 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.43 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=180 side_2_redundant=0 total_non_overlap_reads=51 unique_read_sequence=GAAG JC 80 . NC_000913 780554 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=7 coverage_plus=19 flanking_left=151 flanking_right=151 frequency=2.360e-01 junction_possible_overlap_registers=148 key=NC_000913__780554__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=65 max_left_minus=65 max_left_plus=63 max_min_left=65 max_min_left_minus=65 max_min_left_plus=63 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=298 max_right=132 max_right_minus=121 max_right_plus=132 neg_log10_pos_hash_p_value=44.2 new_junction_coverage=0.21 new_junction_read_count=89 polymorphism_frequency=2.360e-01 pos_hash_score=21 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.10 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=464 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.27 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=116 side_2_redundant=0 total_non_overlap_reads=26 unique_read_sequence=G JC 81 . NC_000913 781369 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=29 coverage_plus=25 flanking_left=151 flanking_right=151 frequency=3.855e-01 junction_possible_overlap_registers=145 key=NC_000913__781369__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=122 max_left_minus=122 max_left_plus=79 max_min_left=67 max_min_left_minus=67 max_min_left_plus=57 max_min_right=68 max_min_right_minus=25 max_min_right_plus=68 max_pos_hash_score=292 max_right=144 max_right_minus=144 max_right_plus=143 neg_log10_pos_hash_p_value=30.2 new_junction_coverage=0.34 new_junction_read_count=138 polymorphism_frequency=3.855e-01 pos_hash_score=45 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=272 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.43 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=180 side_2_redundant=0 total_non_overlap_reads=54 unique_read_sequence=GAAG JC 82 . NC_000913 781369 1 NC_000913 2521006 -1 -3 alignment_overlap=-3 coverage_minus=31 coverage_plus=12 flanking_left=151 flanking_right=151 frequency=3.724e-01 junction_possible_overlap_registers=146 key=NC_000913__781369__1__NC_000913__2521006__-1__-3__GAG__151__151__0__0 max_left=140 max_left_minus=140 max_left_plus=136 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=67 max_min_right_minus=65 max_min_right_plus=67 max_pos_hash_score=294 max_right=67 max_right_minus=65 max_right_plus=67 neg_log10_pos_hash_p_value=35.3 new_junction_coverage=0.32 new_junction_read_count=132 polymorphism_frequency=3.724e-01 pos_hash_score=35 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=272 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.43 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=182 side_2_redundant=0 total_non_overlap_reads=43 unique_read_sequence=GAG JC 83 . NC_000913 781369 1 NC_000913 2521128 -1 -1 alignment_overlap=-1 coverage_minus=32 coverage_plus=13 flanking_left=151 flanking_right=151 frequency=3.588e-01 junction_possible_overlap_registers=148 key=NC_000913__781369__1__NC_000913__2521128__-1__-1__G__151__151__0__0 max_left=141 max_left_minus=140 max_left_plus=141 max_min_left=67 max_min_left_minus=67 max_min_left_plus=0 max_min_right=69 max_min_right_minus=67 max_min_right_plus=69 max_pos_hash_score=298 max_right=79 max_right_minus=79 max_right_plus=69 neg_log10_pos_hash_p_value=34.7 new_junction_coverage=0.25 new_junction_read_count=107 polymorphism_frequency=3.588e-01 pos_hash_score=37 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=272 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.27 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=113 side_2_redundant=0 total_non_overlap_reads=45 unique_read_sequence=G JC 84 . NC_000913 781369 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=9 coverage_plus=21 flanking_left=151 flanking_right=151 frequency=4.138e-01 junction_possible_overlap_registers=148 key=NC_000913__781369__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=140 max_left_minus=140 max_left_plus=79 max_min_left=65 max_min_left_minus=65 max_min_left_plus=63 max_min_right=71 max_min_right_minus=28 max_min_right_plus=71 max_pos_hash_score=298 max_right=132 max_right_minus=121 max_right_plus=132 neg_log10_pos_hash_p_value=42.2 new_junction_coverage=0.32 new_junction_read_count=136 polymorphism_frequency=4.138e-01 pos_hash_score=24 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.64 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=272 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.27 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=116 side_2_redundant=0 total_non_overlap_reads=30 unique_read_sequence=G JC 85 . NC_000913 781524 -1 NC_000913 2818216 -1 0 alignment_overlap=0 coverage_minus=0 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=3.548e-02 junction_possible_overlap_registers=149 key=NC_000913__781524__-1__NC_000913__2818216__-1__0____151__151__0__0 max_left=1 max_left_minus=0 max_left_plus=1 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=147 max_right_minus=0 max_right_plus=147 neg_log10_pos_hash_p_value=61.2 new_junction_coverage=0.02 new_junction_read_count=8 polymorphism_frequency=3.548e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=296 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.33 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=139 side_2_redundant=0 total_non_overlap_reads=4 JC 86 . NC_000913 781577 1 NC_000913 2521006 -1 -4 alignment_overlap=-4 coverage_minus=28 coverage_plus=23 flanking_left=151 flanking_right=151 frequency=4.428e-01 junction_possible_overlap_registers=145 key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__151__151__0__0 max_left=67 max_left_minus=67 max_left_plus=57 max_min_left=67 max_min_left_minus=67 max_min_left_plus=57 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=292 max_right=144 max_right_minus=144 max_right_plus=143 neg_log10_pos_hash_p_value=31.1 new_junction_coverage=0.46 new_junction_read_count=191 polymorphism_frequency=4.428e-01 pos_hash_score=43 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.74 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=314 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.43 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=180 side_2_redundant=0 total_non_overlap_reads=51 unique_read_sequence=GAAG JC 87 . NC_000913 781577 1 NC_000913 2521129 -1 -1 alignment_overlap=-1 coverage_minus=7 coverage_plus=19 flanking_left=151 flanking_right=151 frequency=4.655e-01 junction_possible_overlap_registers=148 key=NC_000913__781577__1__NC_000913__2521129__-1__-1__G__151__151__0__0 max_left=65 max_left_minus=65 max_left_plus=63 max_min_left=65 max_min_left_minus=65 max_min_left_plus=63 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=298 max_right=132 max_right_minus=121 max_right_plus=132 neg_log10_pos_hash_p_value=44.2 new_junction_coverage=0.44 new_junction_read_count=186 polymorphism_frequency=4.655e-01 pos_hash_score=21 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.74 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=314 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.27 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=116 side_2_redundant=0 total_non_overlap_reads=26 unique_read_sequence=G JC 88 . NC_000913 1087638 1 NC_000913 1087664 1 0 alignment_overlap=7 coverage_minus=2 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=7.701e-03 junction_possible_overlap_registers=142 key=NC_000913__1087638__1__NC_000913__1087657__1__7____151__151__0__0 max_left=142 max_left_minus=142 max_left_plus=84 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=23 max_min_right_minus=23 max_min_right_plus=23 max_pos_hash_score=286 max_right=23 max_right_minus=23 max_right_plus=23 neg_log10_pos_hash_p_value=59.7 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=7.701e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.95 side_1_overlap=7 side_1_possible_overlap_registers=149 side_1_read_count=401 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.97 side_2_overlap=0 side_2_possible_overlap_registers=142 side_2_read_count=391 side_2_redundant=0 total_non_overlap_reads=3 JC 89 . NC_000913 1207790 1 NC_000913 1209619 1 0 alignment_overlap=16 coverage_minus=23 coverage_plus=27 flanking_left=151 flanking_right=151 frequency=1.443e-01 junction_possible_overlap_registers=133 key=NC_000913__1207790__1__NC_000913__1209603__1__16____151__151__0__0 max_left=133 max_left_minus=133 max_left_plus=129 max_min_left=64 max_min_left_minus=64 max_min_left_plus=64 max_min_right=66 max_min_right_minus=63 max_min_right_plus=66 max_pos_hash_score=268 max_right=128 max_right_minus=122 max_right_plus=128 neg_log10_pos_hash_p_value=27.9 new_junction_coverage=0.13 new_junction_read_count=50 polymorphism_frequency=1.443e-01 pos_hash_score=44 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.78 side_1_overlap=16 side_1_possible_overlap_registers=149 side_1_read_count=328 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.79 side_2_overlap=0 side_2_possible_overlap_registers=133 side_2_read_count=300 side_2_redundant=0 total_non_overlap_reads=50 JC 90 . NC_000913 1207805 -1 NC_000913 1209602 -1 0 alignment_overlap=16 coverage_minus=25 coverage_plus=33 flanking_left=151 flanking_right=151 frequency=1.676e-01 junction_possible_overlap_registers=133 key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____151__151__0__0 max_left=133 max_left_minus=128 max_left_plus=133 max_min_left=67 max_min_left_minus=67 max_min_left_plus=57 max_min_right=66 max_min_right_minus=66 max_min_right_plus=66 max_pos_hash_score=268 max_right=133 max_right_minus=130 max_right_plus=133 neg_log10_pos_hash_p_value=24.4 new_junction_coverage=0.16 new_junction_read_count=59 polymorphism_frequency=1.676e-01 pos_hash_score=52 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.77 side_1_overlap=16 side_1_possible_overlap_registers=149 side_1_read_count=327 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.78 side_2_overlap=0 side_2_possible_overlap_registers=133 side_2_read_count=294 side_2_redundant=0 total_non_overlap_reads=58 JC 91 . NC_000913 1209618 -1 NC_000913 2471897 1 0 alignment_overlap=15 coverage_minus=3 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.349e-01 junction_possible_overlap_registers=134 key=NC_000913__1209618__-1__NC_000913__2471882__1__15____151__151__0__0 max_left=134 max_left_minus=134 max_left_plus=131 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=14 max_min_right_minus=10 max_min_right_plus=14 max_pos_hash_score=270 max_right=14 max_right_minus=10 max_right_plus=14 neg_log10_pos_hash_p_value=55.3 new_junction_coverage=0.14 new_junction_read_count=53 polymorphism_frequency=1.349e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.81 side_1_overlap=15 side_1_possible_overlap_registers=149 side_1_read_count=341 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.98 side_2_overlap=0 side_2_possible_overlap_registers=134 side_2_read_count=373 side_2_redundant=0 total_non_overlap_reads=5 JC 92 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=10 flanking_left=151 flanking_right=151 frequency=1.269e-01 junction_possible_overlap_registers=129 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____151__151__0__0 max_left=72 max_left_minus=62 max_left_plus=72 max_min_left=20 max_min_left_minus=11 max_min_left_plus=20 max_min_right=49 max_min_right_minus=49 max_min_right_plus=49 max_pos_hash_score=260 max_right=128 max_right_minus=91 max_right_plus=128 neg_log10_pos_hash_p_value=46.0 new_junction_coverage=0.10 new_junction_read_count=35 polymorphism_frequency=1.269e-01 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.47 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=197 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.85 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=311 side_2_redundant=0 total_non_overlap_reads=13 JC 93 . NC_000913 1286907 -1 NC_000913 1287558 1 0 alignment_overlap=0 coverage_minus=4 coverage_plus=0 flanking_left=151 flanking_right=151 frequency=1.005e-01 junction_possible_overlap_registers=149 key=NC_000913__1286907__-1__NC_000913__1287558__1__0____151__151__0__0 max_left=145 max_left_minus=145 max_left_plus=0 max_min_left=28 max_min_left_minus=28 max_min_left_plus=0 max_min_right=69 max_min_right_minus=69 max_min_right_plus=0 max_pos_hash_score=300 max_right=69 max_right_minus=69 max_right_plus=0 neg_log10_pos_hash_p_value=59.8 new_junction_coverage=0.08 new_junction_read_count=32 polymorphism_frequency=1.005e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.47 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=199 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=374 side_2_redundant=0 total_non_overlap_reads=4 JC 94 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=24 coverage_plus=12 flanking_left=151 flanking_right=151 frequency=2.618e-01 junction_possible_overlap_registers=129 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____151__151__0__0 max_left=126 max_left_minus=126 max_left_plus=115 max_min_left=56 max_min_left_minus=56 max_min_left_plus=33 max_min_right=57 max_min_right_minus=57 max_min_right_plus=15 max_pos_hash_score=260 max_right=128 max_right_minus=115 max_right_plus=128 neg_log10_pos_hash_p_value=31.9 new_junction_coverage=0.22 new_junction_read_count=82 polymorphism_frequency=2.618e-01 pos_hash_score=34 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.41 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=175 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.85 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=311 side_2_redundant=0 total_non_overlap_reads=36 JC 95 . NC_000913 1287084 -1 NC_000913 4175537 -1 0 alignment_overlap=19 coverage_minus=8 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=1.186e-01 junction_possible_overlap_registers=130 key=NC_000913__1287084__-1__NC_000913__4175556__-1__19____151__151__0__0 max_left=127 max_left_minus=127 max_left_plus=116 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=15 max_min_right_minus=13 max_min_right_plus=15 max_pos_hash_score=262 max_right=15 max_right_minus=13 max_right_plus=15 neg_log10_pos_hash_p_value=50.0 new_junction_coverage=0.10 new_junction_read_count=37 polymorphism_frequency=1.186e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.41 side_1_overlap=19 side_1_possible_overlap_registers=149 side_1_read_count=175 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.08 side_2_overlap=0 side_2_possible_overlap_registers=130 side_2_read_count=397 side_2_redundant=0 total_non_overlap_reads=10 JC 96 . NC_000913 1287085 -1 NC_000913 1287558 1 0 alignment_overlap=0 coverage_minus=15 coverage_plus=0 flanking_left=151 flanking_right=151 frequency=1.802e-01 junction_possible_overlap_registers=149 key=NC_000913__1287085__-1__NC_000913__1287558__1__0____151__151__0__0 max_left=147 max_left_minus=147 max_left_plus=0 max_min_left=28 max_min_left_minus=28 max_min_left_plus=0 max_min_right=42 max_min_right_minus=42 max_min_right_plus=0 max_pos_hash_score=300 max_right=62 max_right_minus=62 max_right_plus=0 neg_log10_pos_hash_p_value=50.6 new_junction_coverage=0.14 new_junction_read_count=60 polymorphism_frequency=1.802e-01 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.41 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=172 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.88 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=374 side_2_redundant=0 total_non_overlap_reads=15 JC 97 . NC_000913 1287262 -1 NC_000913 1287382 1 0 alignment_overlap=21 coverage_minus=2 coverage_plus=5 flanking_left=151 flanking_right=151 frequency=3.132e-02 junction_possible_overlap_registers=128 key=NC_000913__1287262__-1__NC_000913__1287361__1__21____151__151__0__0 max_left=126 max_left_minus=126 max_left_plus=10 max_min_left=10 max_min_left_minus=0 max_min_left_plus=10 max_min_right=1 max_min_right_minus=1 max_min_right_plus=0 max_pos_hash_score=258 max_right=124 max_right_minus=1 max_right_plus=124 neg_log10_pos_hash_p_value=51.6 new_junction_coverage=0.02 new_junction_read_count=9 polymorphism_frequency=3.132e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.86 side_1_overlap=21 side_1_possible_overlap_registers=149 side_1_read_count=364 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.67 side_2_overlap=0 side_2_possible_overlap_registers=128 side_2_read_count=244 side_2_redundant=0 total_non_overlap_reads=7 JC 98 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=248 coverage_plus=226 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=145 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____151__151__0__0 max_left=145 max_left_minus=145 max_left_plus=140 max_min_left=72 max_min_left_minus=72 max_min_left_plus=72 max_min_right=73 max_min_right_minus=73 max_min_right_plus=73 max_pos_hash_score=292 max_right=145 max_right_minus=145 max_right_plus=145 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.17 new_junction_read_count=480 polymorphism_frequency=1.000e+00 pos_hash_score=235 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=145 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=474 JC 99 . NC_000913 1552035 1 NC_000913 1552368 -1 -22 alignment_overlap=-22 coverage_minus=2 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=NA junction_possible_overlap_registers=127 key=NC_000913__1552035__1__NC_000913__1552368__-1__-22__ACGCCTTTTACAGCGCCATTTT__151__151__0__0 max_left=117 max_left_minus=117 max_left_plus=46 max_min_left=46 max_min_left_minus=0 max_min_left_plus=46 max_min_right=14 max_min_right_minus=14 max_min_right_plus=0 max_pos_hash_score=256 max_right=88 max_right_minus=14 max_right_plus=88 neg_log10_pos_hash_p_value=53.6 new_junction_coverage=0.27 new_junction_read_count=98 polymorphism_frequency=NA pos_hash_score=5 prediction=unknown reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=6 unique_read_sequence=ACGCCTTTTACAGCGCCATTTT JC 100 . NC_000913 1552042 1 NC_000913 1552368 -1 -29 alignment_overlap=-29 coverage_minus=0 coverage_plus=30 flanking_left=151 flanking_right=151 frequency=NA junction_possible_overlap_registers=120 key=NC_000913__1552042__1__NC_000913__1552368__-1__-29__TAAAATGACGCCTTTTACAGCGCCATTTT__151__151__0__0 max_left=93 max_left_minus=0 max_left_plus=93 max_min_left=52 max_min_left_minus=0 max_min_left_plus=52 max_min_right=57 max_min_right_minus=0 max_min_right_plus=57 max_pos_hash_score=242 max_right=117 max_right_minus=0 max_right_plus=117 neg_log10_pos_hash_p_value=36.2 new_junction_coverage=0.14 new_junction_read_count=47 polymorphism_frequency=NA pos_hash_score=23 prediction=unknown reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=30 unique_read_sequence=TAAAATGACGCCTTTTACAGCGCCATTTT JC 101 . NC_000913 1673556 -1 NC_000913 1673677 1 0 alignment_overlap=2 coverage_minus=211 coverage_plus=205 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=147 key=NC_000913__1673556__-1__NC_000913__1673675__1__2____151__151__0__0 max_left=148 max_left_minus=147 max_left_plus=148 max_min_left=73 max_min_left_minus=73 max_min_left_plus=73 max_min_right=74 max_min_right_minus=74 max_min_right_plus=72 max_pos_hash_score=296 max_right=148 max_right_minus=148 max_right_plus=148 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.00 new_junction_read_count=418 polymorphism_frequency=1.000e+00 pos_hash_score=221 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=2 side_1_possible_overlap_registers=149 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=147 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=416 JC 102 . NC_000913 1674768 -1 NC_000913 1674781 1 0 alignment_overlap=6 coverage_minus=183 coverage_plus=178 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=143 key=NC_000913__1674768__-1__NC_000913__1674775__1__6____151__151__0__0 max_left=144 max_left_minus=144 max_left_plus=143 max_min_left=72 max_min_left_minus=72 max_min_left_plus=72 max_min_right=72 max_min_right_minus=71 max_min_right_plus=72 max_pos_hash_score=288 max_right=143 max_right_minus=143 max_right_plus=142 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.89 new_junction_read_count=363 polymorphism_frequency=9.946e-01 pos_hash_score=195 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=6 side_1_possible_overlap_registers=149 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=143 side_2_read_count=2 side_2_redundant=0 total_non_overlap_reads=361 JC 103 . NC_000913 1722616 1 NC_000913 1722612 -1 0 alignment_overlap=11 coverage_minus=2 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=1.719e-02 junction_possible_overlap_registers=138 key=NC_000913__1722616__1__NC_000913__1722623__-1__11____151__151__0__0 max_left=113 max_left_minus=73 max_left_plus=113 max_min_left=63 max_min_left_minus=63 max_min_left_plus=39 max_min_right=67 max_min_right_minus=67 max_min_right_plus=27 max_pos_hash_score=278 max_right=139 max_right_minus=76 max_right_plus=139 neg_log10_pos_hash_p_value=55.0 new_junction_coverage=0.02 new_junction_read_count=6 polymorphism_frequency=1.719e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.86 side_1_overlap=11 side_1_possible_overlap_registers=149 side_1_read_count=364 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.89 side_2_overlap=0 side_2_possible_overlap_registers=138 side_2_read_count=349 side_2_redundant=0 total_non_overlap_reads=6 JC 104 . NC_000913 1978502 -1 NC_000913 1979279 1 0 alignment_overlap=8 coverage_minus=186 coverage_plus=229 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=141 key=NC_000913__1978502__-1__NC_000913__1979271__1__8____151__151__0__0 max_left=142 max_left_minus=141 max_left_plus=142 max_min_left=71 max_min_left_minus=69 max_min_left_plus=71 max_min_right=71 max_min_right_minus=68 max_min_right_plus=71 max_pos_hash_score=284 max_right=142 max_right_minus=141 max_right_plus=142 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.04 new_junction_read_count=415 polymorphism_frequency=9.989e-01 pos_hash_score=214 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=8 side_1_possible_overlap_registers=149 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=141 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=415 JC 105 . NC_000913 2224488 1 NC_000913 2224514 1 0 alignment_overlap=4 coverage_minus=1 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=7.509e-03 junction_possible_overlap_registers=145 key=NC_000913__2224488__1__NC_000913__2224510__1__4____151__151__0__0 max_left=106 max_left_minus=106 max_left_plus=106 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=41 max_min_right_minus=40 max_min_right_plus=41 max_pos_hash_score=292 max_right=146 max_right_minus=40 max_right_plus=146 neg_log10_pos_hash_p_value=60.3 new_junction_coverage=0.01 new_junction_read_count=3 polymorphism_frequency=7.509e-03 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.97 side_1_overlap=4 side_1_possible_overlap_registers=149 side_1_read_count=410 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.96 side_2_overlap=0 side_2_possible_overlap_registers=145 side_2_read_count=394 side_2_redundant=0 total_non_overlap_reads=3 JC 106 . NC_000913 2357873 -1 NC_000913 2357886 1 0 alignment_overlap=0 coverage_minus=30 coverage_plus=11 flanking_left=151 flanking_right=151 frequency=1.577e-01 junction_possible_overlap_registers=149 key=NC_000913__2357873__-1__NC_000913__2357886__1__0____151__151__0__0 max_left=60 max_left_minus=60 max_left_plus=14 max_min_left=60 max_min_left_minus=60 max_min_left_plus=14 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=300 max_right=145 max_right_minus=141 max_right_plus=145 neg_log10_pos_hash_p_value=37.1 new_junction_coverage=0.12 new_junction_read_count=51 polymorphism_frequency=1.577e-01 pos_hash_score=33 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.62 side_1_overlap=0 side_1_possible_overlap_registers=149 side_1_read_count=262 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.67 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=283 side_2_redundant=0 total_non_overlap_reads=41 JC 107 . NC_000913 2560972 -1 NC_000913 2561043 1 0 alignment_overlap=20 coverage_minus=5 coverage_plus=1 flanking_left=151 flanking_right=151 frequency=2.621e-02 junction_possible_overlap_registers=129 key=NC_000913__2560972__-1__NC_000913__2561023__1__20____151__151__0__0 max_left=119 max_left_minus=119 max_left_plus=64 max_min_left=64 max_min_left_minus=39 max_min_left_plus=64 max_min_right=47 max_min_right_minus=47 max_min_right_plus=0 max_pos_hash_score=260 max_right=91 max_right_minus=91 max_right_plus=65 neg_log10_pos_hash_p_value=52.9 new_junction_coverage=0.02 new_junction_read_count=8 polymorphism_frequency=2.621e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.80 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=339 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.82 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=301 side_2_redundant=0 total_non_overlap_reads=6 JC 108 . NC_000913 2714396 -1 NC_000913 3269959 1 -10 alignment_overlap=-10 coverage_minus=0 coverage_plus=10 flanking_left=151 flanking_right=151 frequency=9.538e-02 junction_possible_overlap_registers=139 key=NC_000913__2714396__-1__NC_000913__3269959__1__-10__CAACAATCTG__151__151__0__0 max_left=29 max_left_minus=0 max_left_plus=29 max_min_left=29 max_min_left_minus=0 max_min_left_plus=29 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=280 max_right=137 max_right_minus=0 max_right_plus=137 neg_log10_pos_hash_p_value=53.1 new_junction_coverage=0.06 new_junction_read_count=24 polymorphism_frequency=9.538e-02 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.58 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=244 side_2_redundant=0 total_non_overlap_reads=10 unique_read_sequence=CAACAATCTG JC 109 . NC_000913 2714396 -1 NC_000913 3270072 1 -10 alignment_overlap=-10 coverage_minus=0 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=1.506e-01 junction_possible_overlap_registers=139 key=NC_000913__2714396__-1__NC_000913__3270072__1__-10__CAACAATCTG__151__151__0__0 max_left=33 max_left_minus=0 max_left_plus=33 max_min_left=33 max_min_left_minus=0 max_min_left_plus=33 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=280 max_right=127 max_right_minus=0 max_right_plus=127 neg_log10_pos_hash_p_value=57.7 new_junction_coverage=0.06 new_junction_read_count=22 polymorphism_frequency=1.506e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.31 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=133 side_2_redundant=0 total_non_overlap_reads=4 unique_read_sequence=CAACAATCTG JC 110 . NC_000913 2817783 1 NC_000913 2817922 -1 0 alignment_overlap=20 coverage_minus=5 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=3.137e-02 junction_possible_overlap_registers=129 key=NC_000913__2817783__1__NC_000913__2817942__-1__20____151__151__0__0 max_left=30 max_left_minus=30 max_left_plus=26 max_min_left=30 max_min_left_minus=30 max_min_left_plus=26 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=260 max_right=68 max_right_minus=68 max_right_plus=68 neg_log10_pos_hash_p_value=51.8 new_junction_coverage=0.03 new_junction_read_count=10 polymorphism_frequency=3.137e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.03 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=435 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.66 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=241 side_2_redundant=0 total_non_overlap_reads=7 JC 111 . NC_000913 2817923 1 NC_000913 2818057 -1 0 alignment_overlap=20 coverage_minus=3 coverage_plus=2 flanking_left=151 flanking_right=151 frequency=2.484e-02 junction_possible_overlap_registers=129 key=NC_000913__2817923__1__NC_000913__2818077__-1__20____151__151__0__0 max_left=27 max_left_minus=14 max_left_plus=27 max_min_left=27 max_min_left_minus=14 max_min_left_plus=27 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=260 max_right=116 max_right_minus=116 max_right_plus=104 neg_log10_pos_hash_p_value=55.3 new_junction_coverage=0.02 new_junction_read_count=7 polymorphism_frequency=2.484e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.66 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=279 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.84 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=308 side_2_redundant=0 total_non_overlap_reads=5 JC 112 . NC_000913 2817942 -1 NC_000913 2818078 1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=5 flanking_left=151 flanking_right=151 frequency=3.528e-02 junction_possible_overlap_registers=129 key=NC_000913__2817942__-1__NC_000913__2818058__1__20____151__151__0__0 max_left=68 max_left_minus=68 max_left_plus=68 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=30 max_min_right_minus=26 max_min_right_plus=30 max_pos_hash_score=260 max_right=30 max_right_minus=26 max_right_plus=30 neg_log10_pos_hash_p_value=51.8 new_junction_coverage=0.03 new_junction_read_count=10 polymorphism_frequency=3.528e-02 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.65 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=276 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.84 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=308 side_2_redundant=0 total_non_overlap_reads=7 JC 113 . NC_000913 2817942 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=12 coverage_plus=9 flanking_left=151 flanking_right=151 frequency=1.022e-01 junction_possible_overlap_registers=129 key=NC_000913__2817942__-1__NC_000913__2818472__1__20____151__151__0__0 max_left=68 max_left_minus=68 max_left_plus=68 max_min_left=52 max_min_left_minus=50 max_min_left_plus=52 max_min_right=30 max_min_right_minus=26 max_min_right_plus=30 max_pos_hash_score=260 max_right=125 max_right_minus=109 max_right_plus=125 neg_log10_pos_hash_p_value=40.6 new_junction_coverage=0.09 new_junction_read_count=33 polymorphism_frequency=1.022e-01 pos_hash_score=20 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.65 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=276 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.93 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=341 side_2_redundant=0 total_non_overlap_reads=21 JC 114 . NC_000913 2818077 -1 NC_000913 2818358 1 0 alignment_overlap=20 coverage_minus=2 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=2.417e-02 junction_possible_overlap_registers=129 key=NC_000913__2818077__-1__NC_000913__2818338__1__20____151__151__0__0 max_left=116 max_left_minus=104 max_left_plus=116 max_min_left=30 max_min_left_minus=0 max_min_left_plus=30 max_min_right=27 max_min_right_minus=27 max_min_right_plus=14 max_pos_hash_score=260 max_right=53 max_right_minus=27 max_right_plus=53 neg_log10_pos_hash_p_value=54.1 new_junction_coverage=0.02 new_junction_read_count=7 polymorphism_frequency=2.417e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.79 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=333 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=277 side_2_redundant=0 total_non_overlap_reads=6 JC 115 . NC_000913 2818357 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=7 coverage_plus=4 flanking_left=151 flanking_right=151 frequency=6.297e-02 junction_possible_overlap_registers=129 key=NC_000913__2818357__-1__NC_000913__2818472__1__20____151__151__0__0 max_left=23 max_left_minus=23 max_left_plus=9 max_min_left=23 max_min_left_minus=23 max_min_left_plus=9 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=260 max_right=125 max_right_minus=109 max_right_plus=125 neg_log10_pos_hash_p_value=48.8 new_junction_coverage=0.06 new_junction_read_count=21 polymorphism_frequency=6.297e-02 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.78 side_1_overlap=20 side_1_possible_overlap_registers=149 side_1_read_count=328 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.93 side_2_overlap=0 side_2_possible_overlap_registers=129 side_2_read_count=341 side_2_redundant=0 total_non_overlap_reads=11 JC 116 . NC_000913 3395602 -1 NC_000913 3395603 1 -7 alignment_overlap=-7 coverage_minus=250 coverage_plus=207 flanking_left=151 flanking_right=151 frequency=1 junction_possible_overlap_registers=142 key=NC_000913__3395602__-1__NC_000913__3395603__1__-7__GCCTGGA__151__151__0__0 max_left=140 max_left_minus=140 max_left_plus=140 max_min_left=71 max_min_left_minus=70 max_min_left_plus=71 max_min_right=72 max_min_right_minus=71 max_min_right_plus=72 max_pos_hash_score=266 max_right=143 max_right_minus=142 max_right_plus=143 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.12 new_junction_read_count=453 polymorphism_frequency=9.808e-01 pos_hash_score=212 prediction=consensus side_1_annotate_key=gene side_1_continuation=10 side_1_coverage=0.02 side_1_overlap=0 side_1_possible_overlap_registers=139 side_1_read_count=9 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=149 side_2_read_count=9 side_2_redundant=0 total_non_overlap_reads=457 unique_read_sequence=GCCTGGA JC 117 . NC_000913 4542682 1 NC_000913 4542996 1 0 alignment_overlap=9 coverage_minus=59 coverage_plus=77 flanking_left=151 flanking_right=151 frequency=2.665e-01 junction_possible_overlap_registers=140 key=NC_000913__4542682__1__NC_000913__4542987__1__9____151__151__0__0 max_left=138 max_left_minus=138 max_left_plus=138 max_min_left=70 max_min_left_minus=70 max_min_left_plus=67 max_min_right=70 max_min_right_minus=68 max_min_right_plus=70 max_pos_hash_score=282 max_right=140 max_right_minus=140 max_right_plus=138 neg_log10_pos_hash_p_value=9.5 new_junction_coverage=0.34 new_junction_read_count=136 polymorphism_frequency=2.665e-01 pos_hash_score=107 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.92 side_1_overlap=9 side_1_possible_overlap_registers=149 side_1_read_count=387 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.97 side_2_overlap=0 side_2_possible_overlap_registers=140 side_2_read_count=385 side_2_redundant=0 total_non_overlap_reads=136 JC 118 . NC_000913 4542690 -1 NC_000913 4542986 -1 0 alignment_overlap=9 coverage_minus=70 coverage_plus=67 flanking_left=151 flanking_right=151 frequency=2.739e-01 junction_possible_overlap_registers=140 key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____151__151__0__0 max_left=139 max_left_minus=136 max_left_plus=139 max_min_left=70 max_min_left_minus=68 max_min_left_plus=70 max_min_right=71 max_min_right_minus=70 max_min_right_plus=71 max_pos_hash_score=282 max_right=137 max_right_minus=137 max_right_plus=137 neg_log10_pos_hash_p_value=9.1 new_junction_coverage=0.35 new_junction_read_count=139 polymorphism_frequency=2.739e-01 pos_hash_score=109 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.94 side_1_overlap=9 side_1_possible_overlap_registers=149 side_1_read_count=396 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.92 side_2_overlap=0 side_2_possible_overlap_registers=140 side_2_read_count=365 side_2_redundant=0 total_non_overlap_reads=137 UN 119 . 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