mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 23,942 | G→A | 14.3% | G518S (GGC→AGC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 36,749 | C→T | 36.5% | R364H (CGC→CAC) | caiC ← | predicted crotonobetaine CoA ligase:carnitine CoA ligase |
| RA | 47,858 | G→A | 42.3% | S30S (TCG→TCA) | kefC → | potassium:proton antiporter |
| RA | 58,662 | G→A | 28.1% | V63V (GTG→GTA) | yabP → | hypothetical protein |
| RA | 67,598 | C→T | 12.3% | G247D (GGC→GAC) | araA ← | L‑arabinose isomerase |
| RA | 70,434 | C→T | 44.0% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 40.0% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 49.1% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 47.8% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 45.5% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 38.9% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 41.5% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 53.6% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 51.3% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 108,684 | G→A | 9.1% | A136T (GCG→ACG) | secA → | preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 187,404 | T→C | 13.3% | E416G (GAA→GGA) | glnD ← | uridylyltransferase |
| RA | 236,101 | A→C | 46.4% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 45.3% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 237,868 | A→G | 8.5% | V178V (GTA→GTG) | yafT → | predicted aminopeptidase |
| RA | 241,172 | C→T | 31.6% | G711D (GGT→GAT) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 257,873 | A→G | 24.6% | K15K (AAA→AAG) | crl → | DNA‑binding transcriptional regulator |
| RA | 267,502 | G→T | 32.7% | P228H (CCT→CAT) | ykfA ← | predicted GTP‑binding protein |
| RA | 275,785 | G→A | 42.0% | V413I (GTA→ATA) | mmuP → | predicted S‑methylmethionine transporter |
| RA | 281,512 | C→T | 35.1% | S11F (TCC→TTC) | yagE → | predicted lyase/synthase |
| RA | 285,498 | G→A | 26.3% | A294T (GCC→ACC) | yagG → | predicted sugar transporter |
| RA | 320,985 | A→G | 31.2% | I52V (ATC→GTC) | ykgE → | predicted oxidoreductase |
| RA | 330,092 | A→G | 10.1% | N469S (AAC→AGC) | betT → | choline transporter of high affinity |
| RA | 345,099 | C→T | 25.0% | A155T (GCC→ACC) | yahN ← | neutral amino‑acid efflux system |
| RA | 349,140 | C→T | 36.4% | intergenic (+344/‑96) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 376,307 | C→T | 5.7% | V104V (GTC→GTT) | yaiL → | nucleoprotein/polynucleotide‑associated enzyme |
| RA | 406,395 | C→T | 28.1% | intergenic (+1/‑257) | yaiA → / → aroM | hypothetical protein/conserved hypothetical protein |
| RA | 429,850 | T→C | 47.2% | Y8H (TAT→CAT) | yajD → | conserved hypothetical protein |
| RA | 459,715 | A→G | 20.5% | Y535C (TAC→TGC) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 460,284 | G→T | 28.2% | A725S (GCA→TCA) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 464,946 | A→G | 34.1% | F531L (TTC→CTC) | ybaE ← | predicted transporter subunit |
| RA | 478,343 | C→T | 47.4% | A45T (GCT→ACT) | ylaC ← | predicted inner membrane protein |
| RA | 527,659 | A→G | 44.1% | K163E (AAA→GAA) | ylbH → | conserved hypothetical protein, rhs‑like |
| RA | 530,077 | T→C | 15.4% | Y125C (TAT→TGT) | ybbB ← | tRNA 2‑selenouridine synthase, selenophosphate‑dependent |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 548,801 | G→A | 44.8% | pseudogene (1221/1259 nt) pseudogene (964/1002 nt) |
ylbE → ylbE → |
ECK0512:JW0508+JW0507:b4572; hypothetical protein ECK0512:JW0508:b0519; hypothetical protein, C‑ter fragment |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 593,201 | A→G | 22.2% | F265L (TTC→CTC) | cusS ← | sensory histidine kinase in two‑component regulatory system with CusR, senses copper ions |
| RA | 616,917 | A→G | 11.1% | N1180D (AAT→GAT) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 631,602 | A→G | 48.2% | *66* (TAA→TAG) | ybdD → | conserved hypothetical protein |
| RA | 639,164 | G→A | 36.5% | P63P (CCG→CCA) | ahpF → | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| RA | 647,863 | A→G | 25.5% | M311T (ATG→ACG) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 651,069 | T→C | 37.3% | N4S (AAT→AGT) | citC ← | citrate lyase synthetase |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 695,215 | C→T | 31.8% | A55T (GCT→ACT) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 701,092 | T→C | 23.2% | S309G (AGT→GGT) | nagC ← | DNA‑binding transcriptional dual regulator |
| RA | 702,273 | C→T | 27.5% | D301N (GAT→AAT) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 704,757 | G→A | 31.2% | R131H (CGC→CAC) | nagE → | fused N‑acetyl glucosamine specific PTS enzyme IICBA components |
| RA | 707,707 | A→G | 25.9% | N398S (AAC→AGC) | glnS → | glutamyl‑tRNA synthetase |
| RA | 711,161 | C→T | 34.4% | intergenic (‑93/+196) | fur ← / ← fldA | DNA‑binding transcriptional dual regulator/flavodoxin 1 |
| RA | 713,886 | A→T | 8.3% | I160F (ATC→TTC) | seqA → | regulatory protein for replication initiation |
| RA | 740,630 | C→T | 42.1% | G234G (GGC→GGT) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 797,006 | G→A | 21.7% | G11S (GGC→AGC) | modC → | molybdate transporter subunit |
| RA | 811,947 | G→T | 23.3% | G382V (GGC→GTC) A2S (GCA→TCA) |
bioF → bioC → |
8‑amino‑7‑oxononanoate synthase predicted methltransferase, enzyme of biotin synthesis |
| RA | 833,307 | G→T | 45.3% | T22T (ACC→ACA) | ybiA ← | conserved hypothetical protein |
| RA | 837,886 | C→T | 16.3% | intergenic (+28/+201) | ybiC → / ← ybiJ | predicted dehydrogenase/hypothetical protein |
| RA | 861,111 | G→A | 35.1% | L640L (CTG→TTG) | ybiW ← | predicted pyruvate formate lyase |
| RA | 862,250 | G→T | 27.9% | T260N (ACT→AAT) | ybiW ← | predicted pyruvate formate lyase |
| RA | 891,153 | C→T | 39.0% | R8H (CGT→CAT) | grxA ← | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) |
| RA | 918,188 | G→A | 31.5% | E432K (GAA→AAA) | ybjD → | conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
| RA | 954,052 | C→T | 6.2% | L279L (CTG→CTA) | focA ← | formate transporter |
| RA | 973,796 | C→T | 38.6% | G10S (GGC→AGC) | ycbC ← | conserved inner membrane protein |
| RA | 976,718 | G→A | 17.5% | E216E (GAG→GAA) | mukE → | protein involved in chromosome partitioning |
| RA | 988,122 | A→G | 6.2% | V429A (GTT→GCT) | asnS ← | asparaginyl tRNA synthetase |
| RA | 991,514 | C→T | 8.0% | S157S (TCC→TCT) | pepN → | aminopeptidase N |
| RA | 1,007,501 | A→C | 35.0% | N174K (AAT→AAG) | ycbX ← | predicted 2Fe‑2S cluster‑containing protein |
| RA | 1,008,134 | C→T | 33.6% | intergenic (‑112/‑132) | ycbX ← / → ycbY | predicted 2Fe‑2S cluster‑containing protein/predicted methyltransferase |
| RA | 1,028,434 | G→A | 47.4% | D23N (GAC→AAC) | yccU → | predicted CoA‑binding protein with NAD(P)‑binding Rossmann‑fold domain |
| RA | 1,036,407 | A→G | 40.6% | E72E (GAA→GAG) | hyaD → | protein involved in processing of HyaA and HyaB proteins |
| RA | 1,074,318 | G→T | 38.7% | A39E (GCG→GAG) | ycdM ← | predicted monooxygenase |
| RA | 1,084,947 | A→G | 51.1% | K384E (AAA→GAA) | ycdB → | conserved hypothetical protein |
| RA | 1,088,483 | C→T | 44.3% | Q599Q (CAG→CAA) | ycdR ← | predicted enzyme associated with biofilm formation |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,097,861 | G→A | 51.7% | noncoding (33/88 nt) | serX ← | tRNA‑Ser |
| RA | 1,099,547 | C→T | 47.5% | A143V (GCC→GTC) | ycdX → | predicted zinc‑binding hydrolase |
| RA | 1,112,202 | T→C | 27.3% | F431L (TTT→CTT) | mdoG → | glucan biosynthesis protein, periplasmic |
| RA | 1,115,786 | T→C | 30.2% | intergenic (‑28/+55) | msyB ← / ← mdtG | hypothetical protein/predicted drug efflux system |
| RA | 1,157,831 | G→A | 15.0% | A165T (GCG→ACG) | holB → | DNA polymerase III, delta prime subunit |
| RA | 1,199,872 | T→C | 39.5% | intergenic (‑58/‑400) | ymfE ← / → lit | predicted inner membrane protein/cell death peptidase, inhibitor of T4 late gene expression |
| RA | 1,210,070 | C→T | 36.6% | S121F (TCC→TTC) | ymfS → | hypothetical protein |
| RA | 1,217,476 | T→C | 6.4% | I37I (ATT→ATC) | ycgZ → | hypothetical protein |
| RA | 1,224,919 | G→A | 34.7% | intergenic (‑423/‑123) | ymgG ← / → ymgH | hypothetical protein/hypothetical protein |
| RA | 1,234,526 | T→C | 19.1% | T28A (ACG→GCG) | dsbB ← | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,237,438 | G→A | 24.5% | P461S (CCA→TCA) | ycgB ← | conserved hypothetical protein |
| RA | 1,254,608 | T→C | 25.0% | intergenic (+46/+54) | dhaR → / ← ycgV | predicted DNA‑binding transcriptional regulator, dihydroxyacetone/predicted adhesin |
| RA | 1,255,918 | C→T | 38.4% | G538S (GGC→AGC) | ycgV ← | predicted adhesin |
| RA | 1,274,854 | G→A | 29.1% | T108M (ACG→ATG) | ychN ← | conserved hypothetical protein |
| RA | 1,287,091 | C→T | 31.6% | Q126* (CAA→TAA) | narJ → | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| RA | 1,295,635 | T→C | 41.0% | Y178H (TAC→CAC) | tdk → | thymidine kinase/deoxyuridine kinase |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,352,881 | T→C | 34.8% | intergenic (‑128/+240) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/conserved hypothetical protein |
| RA | 1,364,882 | G→A | 36.3% | V142V (GTG→GTA) | puuC → | gamma‑Glu‑gamma‑aminobutyraldehyde dehydrogenase, NAD(P)H‑dependent |
| RA | 1,389,366 | A→G | 46.1% | L311L (TTA→TTG) | tyrR → | DNA‑binding transcriptional dual regulator, tyrosine‑binding |
| RA | 1,393,837 | C→T | 40.4% | R45* (CGA→TGA) | ycjZ → | predicted DNA‑binding transcriptional regulator |
| RA | 1,413,523 | G→A | 37.8% | S47F (TCC→TTC) | ydaO ← | predicted C32 tRNA thiolase |
| RA | 1,420,362 | C→T | 28.6% | intergenic (‑419/‑23) | kil ← / → sieB | inhibitor of ftsZ, killing protein/phage superinfection exclusion protein |
| RA | 1,430,136 | C→T | 23.8% | pseudogene (965/1527 nt) R102H (CGC→CAC) |
lomR → insH ← |
ECK1366:JW5884+JW5904:b4570; Rac prophage region; hypothetical protein IS5 transposase and trans‑activator |
| RA | 1,458,727 | A→G | 25.0% | E195G (GAA→GGA) | paaE → | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation |
| RA | 1,484,463 | T→C | 17.6% | I38V (ATC→GTC) | azoR ← | NADH‑azoreductase, FMN‑dependent |
| RA | 1,516,711 | C→T | 42.3% | A79V (GCG→GTG) | ydcV → | predicted spermidine/putrescine transporter subunit |
| RA | 1,516,927 | A→G | 25.9% | N151S (AAT→AGT) | ydcV → | predicted spermidine/putrescine transporter subunit |
| RA | 1,525,582 | A→G | 30.9% | T188A (ACC→GCC) | yncE → | conserved hypothetical protein |
| RA | 1,559,619 | A→G | 28.6% | L45S (TTA→TCA) | ddpF ← | D‑Ala‑D‑Ala transporter subunit |
| RA | 1,584,624 | A→G | 35.4% | intergenic (‑386/+16) | ydeN ← / ← ydeO | conserved hypothetical protein/predicted DNA‑binding transcriptional acfivator |
| RA | 1,623,810 | C→T | 46.8% | A255A (GCC→GCT) | ydeE → | predicted transporter |
| RA | 1,636,349 | G→A | 26.0% | A84V (GCG→GTG) | tfaQ ← | predicted tail fibre assembly protein |
| RA | 1,682,290 | C→T | 39.1% | C340C (TGC→TGT) | ydgI → | predicted arginine/ornithine antiporter transporter |
| RA | 1,683,257 | G→A | 29.5% | D190N (GAT→AAT) | folM → | dihydrofolate reductase isozyme |
| RA | 1,691,217 | G→A | 27.3% | A310T (GCA→ACA) | manA → | mannose‑6‑phosphate isomerase |
| RA | 1,700,325 | C→A | 36.1% | G190G (GGG→GGT) | malI ← | DNA‑binding transcriptional repressor |
| RA | 1,717,162 | C→T | 5.8% | V148I (GTT→ATT) | pdxY ← | pyridoxal kinase 2/pyridoxine kinase |
| RA | 1,724,748 | T→C | 26.8% | V305A (GTC→GCC) | ydhK → | conserved inner membrane protein |
| RA | 1,745,181 | A→G | 40.7% | Y4C (TAT→TGT) | mdtK → | multidrug efflux system transporter |
| RA | 1,746,430 | C→T | 10.1% | G420G (GGC→GGT) | mdtK → | multidrug efflux system transporter |
| RA | 1,754,025 | G→A | 31.3% | P507L (CCA→CTA) | ydhV ← | predicted oxidoreductase |
| RA | 1,785,165:1 | +T | 12.8% | coding (475/1701 nt) | ydiD → | short chain acyl‑CoA synthetase, anaerobic |
| RA | 1,829,978 | Δ1 bp | 34.5% | coding (1471/1479 nt) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,857,513 | C→T | 21.0% | G58E (GGA→GAA) | ydjG ← | predicted oxidoreductase |
| RA | 1,874,182 | A→G | 20.0% | Y143C (TAC→TGC) | yeaJ → | predicted diguanylate cyclase |
| RA | 1,903,275 | T→C | 7.0% | I9V (ATT→GTT) | yoaE ← | fused predicted membrane proteins |
| RA | 1,953,447 | G→A | 46.0% | A113A (GCG→GCA) | yecE → | conserved hypothetical protein |
| RA | 1,987,171 | G→A | 38.9% | G12G (GGC→GGT) | araG ← | fused L‑arabinose transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 2,002,152 | T→C | 17.1% | Y124C (TAC→TGC) | fliY ← | cystine transporter subunit |
| RA | 2,018,964 | G→A | 58.5% | A92T (GCG→ACG) | fliI → | flagellum‑specific ATP synthase |
| RA | 2,021,281 | C→A | 43.5% | R253R (CGC→CGA) | fliK → | flagellar hook‑length control protein |
| RA | 2,055,031 | C→T | 5.8% | pseudogene (435/1053 nt) pseudogene (435/705 nt) |
yeeL ← yeeL ← |
ECK1975:JW1961+JW5325:b4497; hypothetical protein ECK1975:JW1961:b1980; hypothetical protein, N‑ter fragment |
| RA | 2,076,552 | A→G | 32.1% | V959V (GTA→GTG) | flu → | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,082,018 | A→G | 38.3% | I237I (ATT→ATC) | yeeA ← | conserved inner membrane protein |
| RA | 2,086,059 | T→C | 20.4% | R389R (CGT→CGC) | sbcB → | exonuclease I |
| RA | 2,099,387 | T→C | 23.3% | intergenic (+25/+71) | hisI → / ← cld | fused phosphoribosyl‑AMP cyclohydrolase and phosphoribosyl‑ATP pyrophosphatase/regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 2,170,757 | T→C | 7.9% | intergenic (‑314/‑92) | yegR ← / → yegS | hypothetical protein/conserved hypothetical protein |
| RA | 2,176,396 | C→T | 35.6% | M6I (ATG→ATA) | gatC ← | galactitol‑specific enzyme IIC component of PTS |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| RA | 2,218,928 | T→C | 10.5% | I243I (ATT→ATC) | mlrA → | DNA‑binding transcriptional regulator |
| RA | 2,238,432 | T→C | 32.8% | L356L (TTA→CTA) | yeiT → | predicted oxidoreductase |
| RA | 2,246,753 | A→G | 11.5% | G78G (GGT→GGC) | folE ← | GTP cyclohydrolase I |
| RA | 2,251,587 | A→G | 13.7% | F94L (TTT→CTT) | lysP ← | lysine transporter |
| RA | 2,266,989 | T→C | 39.1% | intergenic (‑160/‑208) | fruB ← / → setB | fused fructose‑specific PTS enzyme IIA component and HPr component/lactose/glucose efflux system |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,331,670 | C→T | 10.8% | Q298* (CAA→TAA) | atoB → | acetyl‑CoA acetyltransferase |
| RA | 2,358,400 | G→A | 39.7% | A362T (GCT→ACT) | glpA → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding |
| RA | 2,387,067 | G→A | 16.0% | G264S (GGC→AGC) | elaC → | binuclear zinc phosphodiesterase |
| RA | 2,389,320 | T→C | 6.7% | N358S (AAC→AGC) | yfbK ← | conserved hypothetical protein |
| RA | 2,400,279 | C→T | 27.0% | P96P (CCG→CCA) | nuoJ ← | NADH:ubiquinone oxidoreductase, membrane subunit J |
| RA | 2,462,102 | A→G | 10.8% | F53L (TTC→CTC) | sixA ← | phosphohistidine phosphatase |
| RA | 2,493,033 | C→T | 19.6% | Q1072* (CAG→TAG) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| RA | 2,505,539 | A→G | 8.6% | K475E (AAA→GAA) | ypdA → | predicted sensory kinase in two‑component system with YpdB |
| RA | 2,513,100 | T→C | 11.4% | N81D (AAT→GAT) | ypdG ← | predicted enzyme IIC component of PTS |
| RA | 2,533,467 | C→T | 24.0% | G47S (GGT→AGT) | ypeB ← | hypothetical protein |
| RA | 2,551,149 | C→T | 11.7% | intergenic (‑94/‑70) | yfeT ← / → yfeU | predicted DNA‑binding transcriptional regulator/predicted PTS component |
| RA | 2,609,011 | T→C | 46.7% | N64N (AAT→AAC) | hyfH → | hydrogenase 4, Fe‑S subunit |
| RA | 2,622,878 | T→C | 9.4% | G393G (GGT→GGC) | ppk → | polyphosphate kinase, component of RNA degradosome |
| RA | 2,632,686 | A→G | 34.8% | V14A (GTT→GCT) | guaB ← | IMP dehydrogenase |
| RA | 2,678,206 | C→T | 32.4% | A1066T (GCT→ACT) | yphG ← | conserved hypothetical protein |
| RA | 2,680,577 | C→A | 43.0% | L275L (CTG→CTT) | yphG ← | conserved hypothetical protein |
| RA | 2,695,708 | C→T | 33.8% | L372F (CTT→TTT) | yfhD → | predicted transglycosylase |
| RA | 2,719,037 | G→A | 36.7% | V143V (GTG→GTA) | yfiQ → | fused predicted acyl‑CoA synthetase NAD(P)‑binding subunit and ATP‑binding subunit |
| RA | 2,771,011 | C→T | 6.5% | G111S (GGC→AGC) | ypjL ← | predicted inner membrane protein |
| RA | 2,771,105 | G→A | 40.5% | N79N (AAC→AAT) | ypjL ← | predicted inner membrane protein |
| RA | 2,809,581 | G→A | 53.6% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,820,171 | G→A | 10.0% | A166V (GCA→GTA) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,841,531 | G→A | 40.4% | R57* (CGA→TGA) | hycI ← | protease involved in processing C‑terminal end of HycE |
| RA | 2,855,731 | G→T | 12.9% | intergenic (‑269/‑18) | ygbA ← / → mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| RA | 2,855,732 | G→A | 13.1% | intergenic (‑270/‑17) | ygbA ← / → mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| RA | 2,863,059 | G→A | 41.4% | L56L (CTG→CTA) | ygbM → | conserved hypothetical protein |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 2,880,475 | G→A | 14.8% | A108A (GCC→GCT) | ygcJ ← | hypothetical protein |
| RA | 2,882,995 | C→T | 19.2% | intergenic (‑201/+214) | ygcL ← / ← ygcB | hypothetical protein/conserved hypothetical protein, member of DEAD box family |
| RA | 2,902,804 | C→A | 64.3% | intergenic (+774/+599) | ygcE → / ← ygcF | predicted kinase/conserved hypothetical protein |
| RA | 2,936,230 | C→T | 34.6% | A46V (GCC→GTC) | fucK → | L‑fuculokinase |
| RA | 2,951,877 | G→A | 28.3% | A928V (GCT→GTT) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,966,215 | T→G | 42.9% | K292N (AAA→AAC) | ptsP ← | fused PEP‑protein phosphotransferase (enzyme I) of PTS system |
| RA | 2,972,729 | T→C | 46.1% | S648G (AGC→GGC) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase and acyl‑acyl carrier protein synthetase |
| RA | 2,995,004 | T→C | 8.8% | N14D (AAT→GAT) | ygeO ← | hypothetical protein |
| RA | 2,996,898 | A→T | 50.0% | M196K (ATG→AAG) | ygeQ ← | hypothetical protein |
| RA | 2,998,999 | G→A | 40.8% | intergenic (‑452/‑2) | ygeR ← / → xdhA | Tetratricopeptide repeat transcriptional regulator/xanthine dehydrogenase, molybdenum binding subunit |
| RA | 3,001,511 | T→C | 40.0% | I81T (ATA→ACA) | xdhB → | xanthine dehydrogenase, FAD‑binding subunit |
| RA | 3,007,077 | C→T | 34.7% | N304N (AAC→AAT) | ygeX → | 2,3‑diaminopropionate ammonia‑lyase |
| RA | 3,012,950 | A→G | 37.8% | V255A (GTG→GCG) | yqeC ← | conserved hypothetical protein |
| RA | 3,018,853 | C→T | 28.1% | T346I (ACT→ATT) | ssnA → | predicted chlorohydrolase/aminohydrolase |
| RA | 3,029,347 | G→A | 8.8% | Q81* (CAA→TAA) | ygfT ← | fused predicted oxidoreductase Fe‑S subunit and nucleotide‑binding subunit |
| RA | 3,055,306 | C→T | 10.2% | T137I (ACC→ATC) | ygfA → | predicted ligase |
| RA | 3,059,788 | C→T | 36.6% | L95L (CTG→TTG) | yliK → | methylmalonyl‑CoA mutase |
| RA | 3,065,341 | G→T | 38.7% | I163I (ATC→ATA) | ygfI ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,088,289 | T→C | 8.6% | N450N (AAT→AAC) | galP → | D‑galactose transporter |
| RA | 3,113,649 | C→T | 50.8% | A1374T (GCA→ACA) | yghJ ← | predicted inner membrane lipoprotein |
| RA | 3,117,343 | C→A | 10.3% | A142A (GCG→GCT) | yghJ ← | predicted inner membrane lipoprotein |
| RA | 3,139,938 | C→T | 43.7% | R2H (CGT→CAT) | hybD ← | predicted maturation element for hydrogenase 2 |
| RA | 3,162,310 | G→A | 32.3% | intergenic (‑173/+61) | plsC ← / ← parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A |
| RA | 3,191,865 | G→A | 21.3% | A116T (GCC→ACC) | yqiK → | conserved hypothetical protein |
| RA | 3,205,529 | C→T | 36.4% | D137D (GAC→GAT) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,213,568 | C→T | 33.3% | intergenic (+24/+55) | rpoD → / ← ygjF | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase |
| RA | 3,220,824 | C→A | 19.1% | P235T (CCG→ACG) | ebgR → | DNA‑binding transcriptional repressor |
| RA | 3,224,816 | C→T | 31.2% | H147Y (CAT→TAT) | ebgC → | cryptic beta‑D‑galactosidase, beta subunit |
| RA | 3,244,017 | G→A | 31.5% | Q86Q (CAG→CAA) | exuT → | hexuronate transporter |
| RA | 3,253,271 | C→T | 43.3% | V99V (GTC→GTT) | yhaK → | predicted pirin‑related protein |
| RA | 3,259,237 | G→A | 32.0% | S613F (TCT→TTT) | tdcE ← | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | insH–[tdcD] | insH, [tdcD] | |
| RA | 3,263,996 | C→T | 43.3% | V293M (GTG→ATG) | tdcC ← | L‑threonine/L‑serine transporter |
| RA | 3,294,438 | T→C | 38.6% | L395S (TTG→TCG) | yraM → | conserved hypothetical protein |
| RA | 3,306,434 | G→A | 33.3% | L428L (CTG→TTG) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,317,696 | G→A | 7.5% | H56Y (CAC→TAC) | yhbC ← | conserved hypothetical protein |
| RA | 3,320,162 | T→C | 5.5% | Y436C (TAT→TGT) | yhbX ← | predicted hydrolase, inner membrane |
| RA | 3,332,615 | T→A | 36.6% | intergenic (‑25/+102) | yhbE ← / ← rpmA | conserved inner membrane protein/50S ribosomal subunit protein L27 |
| RA | 3,338,549 | G→A | 39.7% | F185F (TTC→TTT) | yrbE ← | predicted toluene transporter subunit |
| RA | 3,348,184 | T→C | 8.1% | intergenic (+91/‑123) | npr → / → yrbL | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein |
| RA | 3,375,433 | A→G | 30.2% | D237G (GAT→GGT) | dcuD → | predicted transporter |
| RA | 3,439,867 | T→C | 35.6% | intergenic (‑89/‑6) | nudC ← / → rsd | NADH pyrophosphatase/stationary phase protein, binds sigma 70 RNA polymerase subunit |
| RA | 3,458,921 | T→C | 42.6% | K6K (AAA→AAG) | nusG ← | transcription termination factor |
| RA | 3,459,280 | T→C | 33.3% | E15G (GAA→GGA) | secE ← | preprotein translocase membrane subunit |
| RA | 3,472,611 | G→A | 35.3% | G144G (GGC→GGT) | btuB ← | vitamin B12/cobalamin outer membrane transporter |
| RA | 3,485,691 | T→C | 15.1% | R703R (CGT→CGC) | ppc → | phosphoenolpyruvate carboxylase |
| RA | 3,497,165 | G→A | 40.4% | A65T (GCG→ACG) | fsaB → | fructose‑6‑phosphate aldolase 2 |
| RA | 3,502,074 | T→C | 28.8% | E258G (GAA→GGA) | katG ← | catalase/hydroperoxidase HPI(I) |
| RA | 3,516,285 | T→C | 33.4% | intergenic (+20/‑47) | hslU → / → menA | molecular chaperone and ATPase component of HslUV protease/1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase |
| RA | 3,521,572 | G→A | 37.5% | L157L (CTG→CTA) | glpX → | fructose 1,6‑bisphosphatase II |
| RA | 3,532,412 | T→C | 38.6% | M236T (ATG→ACG) | cpxA → | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 3,533,883 | T→C | 36.6% | intergenic (‑24/+125) | yiiM ← / ← kdgT | conserved hypothetical protein/2‑keto‑3‑deoxy‑D‑gluconate transporter |
| RA | 3,564,985 | T→C | 29.8% | F21L (TTT→CTT) | yihS → | predicted glucosamine isomerase |
| RA | 3,584,576 | G→A | 19.0% | P21S (CCA→TCA) | hemN ← | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
| RA | 3,609,702 | C→T | 23.8% | E151E (GAG→GAA) | fre ← | flavin reductase |
| RA | 3,639,730 | T→C | 35.7% | K222R (AAA→AGA) | xerC ← | site‑specific tyrosine recombinase |
| RA | 3,657,262 | C→T | 25.9% | E273E (GAG→GAA) | wzyE ← | predicted Wzy protein involved in ECA polysaccharide chain elongation |
| RA | 3,659,714 | G→A | 5.6% | T230T (ACC→ACT) | wzxE ← | O‑antigen translocase |
| RA | 3,659,825 | C→T | 33.7% | M193I (ATG→ATA) | wzxE ← | O‑antigen translocase |
| RA | 3,704,876 | C→T | 36.0% | M164I (ATG→ATA) | trkD ← | potassium transporter |
| RA | 3,707,036 | G→A | 23.5% | A483T (GCC→ACC) | yieN → | fused predicted transcriptional regulators |
| RA | 3,727,747 | T→C | 34.5% | V168V (GTT→GTC) | pstA → | phosphate transporter subunit |
| RA | 3,733,360 | T→C | 42.1% | Y127H (TAC→CAC) | bglB → | cryptic phospho‑beta‑glucosidase B |
| RA | 3,735,429 | G→A | 24.3% | A323T (GCA→ACA) | bglH → | carbohydrate‑specific outer membrane porin, cryptic |
| RA | 3,739,327 | C→T | 34.1% | V195I (GTT→ATT) | yieH ← | predicted hydrolase |
| RA | 3,741,050 | G→A | 44.2% | G326D (GGC→GAC) | yieG → | predicted inner membrane protein |
| MC JC | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,913 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| MC JC | 3,750,593 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,764,664 | T→C | 38.1% | N106D (AAT→GAT) | yidX ← | predicted lipoproteinC |
| RA | 3,790,027 | C→A | 13.4% | H113N (CAT→AAT) | uhpA → | DNA‑binding response regulator in two‑component regulatory system wtih UhpB |
| RA | 3,806,473 | G→A | 35.4% | P198P (CCG→CCA) | yicI → | predicted alpha‑glucosidase |
| RA | 3,815,599 | C→T | 5.4% | A102T (GCT→ACT) | trmH ← | tRNA (Guanosine‑2'‑O‑)‑methyltransferase |
| RA | 3,824,280 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,326 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,362 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,368 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,374 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,380 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,410 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,514 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,524 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,533:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,970 | G→A | 5.9% | G108S (GGC→AGC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,846,918 | T→C | 36.8% | V62A (GTT→GCT) | htrL → | hypothetical protein |
| RA | 3,849,808 | T→C | 8.9% | F246S (TTT→TCT) | tdh → | threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,915,008 | C→T | 5.5% | intergenic (+4/‑91) | ysaB → / → glyQ | hypothetical protein/glycine tRNA synthetase, alpha subunit |
| RA | 3,915,033 | T→C | 31.2% | intergenic (+29/‑66) | ysaB → / → glyQ | hypothetical protein/glycine tRNA synthetase, alpha subunit |
| RA | 3,915,241 | A→G | 30.2% | E48G (GAG→GGG) | glyQ → | glycine tRNA synthetase, alpha subunit |
| RA | 3,916,520 | G→A | 13.0% | L167L (CTG→CTA) | glyS → | glycine tRNA synthetase, beta subunit |
| RA | 3,936,857 | G→A | 9.4% | D97N (GAC→AAC) | dppD → | dipeptide transporter |
| RA | 3,980,009 | T→C | 13.3% | intergenic (‑6/+19) | mdtF ← / ← mdtE | multidrug transporter, RpoS‑dependent/multidrug resistance efflux transporter |
| RA | 3,996,085 | C→T | 37.2% | A284V (GCC→GTC) | prlC → | oligopeptidase A |
| RA | 3,998,703 | A→G | 31.4% | Y285H (TAC→CAC) | yhiP ← | predicted transporter |
| RA | 4,000,389 | A→G | 41.1% | intergenic (‑83/‑308) | uspA ← / → yhiO | universal stress global response regulator/predicted universal stress (ethanol tolerance) protein B |
| RA | 4,010,113 | C→T | 10.7% | A100V (GCC→GTC) | yhiI → | predicted HlyD family secretion protein |
| RA | 4,012,376 | G→A | 38.3% | A500T (GCC→ACC) | rbbA → | fused ribosome‑associated ATPases |
| RA | 4,014,473 | T→C | 35.6% | L287P (CTG→CCG) | yhhJ → | predicted transporter subunit |
| RA | 4,015,328 | G→A | 40.0% | H238Y (CAT→TAT) | yhhI ← | predicted transposase |
| RA | 4,017,703 | T→C | 45.5% | N1175D (AAC→GAC) | rhsB ← | rhsB element core protein RshB |
| RA | 4,027,859 | A→G | 51.7% | L232L (TTG→CTG) | yhhT ← | predicted inner membrane protein |
| RA | 4,032,019 | C→T | 19.5% | D650N (GAC→AAC) | zntA ← | zinc, cobalt and lead efflux system |
| RA | 4,036,723 | G→A | 37.5% | A184T (GCT→ACT) | ftsY → | fused Signal Recognition Particle (SRP) receptor |
| RA | 4,057,230 | A→G | 9.2% | C49C (TGT→TGC) | yrhA ← | conserved hypothetical protein |
| RA | 4,064,477 | A→G | 22.2% | E374E (GAA→GAG) | gntU → | gluconate transporter, low affinity GNT 1 system |
| RA | 4,079,866 | T→C | 5.1% | Y19H (TAT→CAT) | glpR → | DNA‑binding transcriptional repressor |
| RA | 4,083,312 | G→A | 52.6% | G325E (GGG→GAG) | rtcB → | conserved hypothetical protein |
| RA | 4,093,241 | C→A | 33.8% | G207C (GGT→TGT) | gntT ← | gluconate transporter, high‑affinity GNT I system |
| RA | 4,094,617 | G→A | 48.2% | L60L (CTG→TTG) | gntY ← | predicted gluconate transport associated protein |
| RA | 4,123,875 | G→A | 43.9% | R255H (CGC→CAC) | damX → | hypothetical protein |
| RA | 4,178,679 | A→G | 40.8% | L91S (TTA→TCA) | gspH ← | predicted general secretory pathway component, cryptic |
| RA | 4,184,522 | C→T | 37.7% | V107I (GTC→ATC) | gspC ← | general secretory pathway component, cryptic |
| RA | 4,220,648 | C→T | 25.0% | P527S (CCA→TCA) | aceB → | malate synthase A |
| RA | 4,244,991 | T→A | 7.7% | I286F (ATC→TTC) | xylE ← | D‑xylose transporter |
| RA | 4,281,027 | T→C | 30.8% | intergenic (‑52/‑34) | soxS ← / → soxR | DNA‑binding transcriptional dual regulator/DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| MC JC | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,315,024 | C→T | 37.2% | D213N (GAC→AAC) | alsA ← | fused D‑allose transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 4,324,790 | T→C | 25.7% | Y185C (TAC→TGC) | phnI ← | carbon‑phosphorus lyase complex subunit |
| RA | 4,328,660 | C→T | 29.5% | V125I (GTC→ATC) | phnD ← | phosphonate/organophosphate ester transporter subunit |
| RA | 4,333,478 | G→A | 17.0% | R555H (CGC→CAC) | yjdA → | conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
| RA | 4,350,232 | G→A | 43.5% | R3C (CGC→TGC) | yjdF ← | conserved inner membrane protein |
| RA | 4,371,273 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,392,090 | G→T | 28.8% | L655M (CTG→ATG) | yjeP ← | predicted mechanosensitive channel |
| RA | 4,407,692 | C→T | 46.3% | R325C (CGT→TGT) | hflK → | modulator for HflB protease specific for phage lambda cII repressor |
| RA | 4,418,872 | A→G | 36.6% | *388* (TAA→TGA) | yjfC → | predicted synthetase/amidase |
| RA | 4,443,410 | G→A | 31.6% | L179L (CTG→TTG) | ytfJ ← | predicted transcriptional regulator |
| RA | 4,477,260 | G→A | 42.6% | intergenic (‑45/+236) | pyrL ← / ← yjgH | pyrBI operon leader peptide/predicted mRNA endoribonuclease |
| RA | 4,480,143 | T→C | 5.5% | Y9H (TAT→CAT) | yjgL → | hypothetical protein |
| RA | 4,487,535 | G→A | 31.2% | P329S (CCT→TCT) | valS ← | valyl‑tRNA synthetase |
| RA | 4,494,403 | G→A | 42.6% | L115L (CTG→TTG) | yjgR ← | predicted ATPase |
| RA | 4,496,317 | G→A | 44.4% | G297G (GGC→GGT) | idnT ← | L‑idonate and D‑gluconate transporter |
| RA | 4,519,843 | G→A | 6.4% | S506L (TCA→TTA) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,561,090 | G→A | 37.6% | intergenic (‑88/‑585) | yjiC ← / → yjiD | hypothetical protein/DNA replication/recombination/repair protein |
| RA | 4,563,589 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,580,803 | C→T | 30.4% | pseudogene (1987/2721 nt) | yjiV → | ECK4334:JW5954:b4486; conserved hypothetical protein |
| RA | 4,586,637 | G→A | 34.8% | P365L (CCG→CTG) | hsdM ← | DNA methylase M |
| RA | 4,588,402 | C→T | 15.3% | L1032L (CTG→CTA) | hsdR ← | endonuclease R |
| RA | 4,591,445 | G→A | 22.4% | T18I (ACA→ATA) | hsdR ← | endonuclease R |
| RA | 4,604,824 | G→A | 13.5% | S16S (AGC→AGT) | yjjA ← | conserved hypothetical protein |
| RA | 4,606,089 | G→A | 31.4% | N37N (AAC→AAT) | dnaT ← | DNA biosynthesis protein |
| RA | 4,628,828 | C→T | 39.0% | *215* (TGA→TAA) | ytjB ← | conserved hypothetical protein |
| RA | 4,643,405 | T→C | 29.0% | H182H (CAT→CAC) | creD → | inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 283083 | 283271 | 189 | 11 [9] | [9] 10 | yagF | predicted dehydratase |
| * | * | ÷ | W3110S.gb | 422765 | 422797 | 33 | 11 [9] | [9] 10 | malZ | maltodextrin glucosidase |
| * | * | ÷ | W3110S.gb | 573861–575008 | 575999 | 992–2139 | 11 [9] | [0] 133 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | W3110S.gb | 598785 | 598819 | 35 | 15 [7] | [9] 10 | cusA | copper/silver efflux system, membrane component |
| * | * | ÷ | W3110S.gb | 721524 | 721547 | 24 | 10 [6] | [8] 12 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | W3110S.gb | 1421298 | 1421329 | 32 | 10 [8] | [2] 10 | ydaG/racR | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 2041777 | 2041797 | 21 | 10 [6] | [8] 10 | yedY | predicted reductase |
| * | * | ÷ | W3110S.gb | 2569113 | 2569136 | 24 | 10 [9] | [8] 10 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | W3110S.gb | 4213619–4216704 | 4216704 | 1–3086 | 11 [9] | [8] 13 | rrlE–[rrfE] | rrlE,[rrfE] |
| * | * | ÷ | W3110S.gb | 4329957 | 4329976 | 20 | 10 [6] | [7] 10 | phnC/phnB | phosphonate/organophosphate ester transporter subunit/conserved hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 59 (1.110) | 58 (1.400) +CGCGTACAACT |
28/76 | NT | 49.9% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 91 (1.710) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | W3110S.gb | = 71265 | 74 (1.390) | 20 (0.530) +AGGGTCCCTAAGTC |
11/70 | NT | 37.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 18 (0.340) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 57 (1.070) | 27/98 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 70 (1.310) | 32/98 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 92 (1.730) | 41/98 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 713380 = | 58 (1.090) | 46 (0.940) | 30/90 | NT | 48.6% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 44 (0.900) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 713954 | 38 (0.710) | 60 (1.130) | 38/98 | NT | 49.8% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 83 (1.560) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | 1209367 = | 23 (0.430) | 21 (0.590) | 18/66 | NT | 57.9% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 15 (0.420) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1209382 | 25 (0.470) | 16 (0.450) | 11/66 | NT | 50.1% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 15 (0.420) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1572471 | NA (NA) | 5 (0.090) | 3/98 | NT | NA | coding (1289/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent |
| ? | W3110S.gb | = 1572521 | NA (NA) | coding (1239/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent | |||||
| * | ? | W3110S.gb | 2018571 = | 7 (0.130) | 51 (1.020) | 32/92 | NT | 88.6% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | W3110S.gb | = 2018583 | 2 (0.040) | 37 (0.720) | 24/94 | NT | 95.1% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 55 (1.050) | 33/96 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 47 (0.920) | 27/94 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 91 (1.750) | 44/96 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 80 (1.500) | 34/98 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 85 (1.600) | 43/98 | NT | 90.4% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 9 (0.170) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | = 2855747 | 46 (0.860) | 17 (0.330) | 11/96 | NT | 23.6% | intergenic (‑285/‑2) | ygbA/mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| ? | W3110S.gb | 4124505 = | 65 (1.250) | coding (1/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | 3748799 = | 2 (0.040) | 66 (1.240) | 39/98 | NT | 97.1% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | W3110S.gb | 4547364 = | 28 (0.530) | 8 (0.180) | 7/80 | NT | 25.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 25 (0.580) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | W3110S.gb | = 4547372 | 23 (0.430) | 13 (0.300) | 11/80 | NT | 37.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 25 (0.580) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||