breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	9,442	T→C	53.1%	L46S (TTA→TCA)	mog →	predicted molybdochelatase
RA	45,813	C→T	66.7%	P3S (CCG→TCG)	yaaU →	predicted transporter
RA	47,828	A→G	62.2%	V20V (GTA→GTG)	kefC →	potassium:proton antiporter
RA	70,244	T→C	30.4%	intergenic (‑196/‑143)	araB ← / → araC	L‑ribulokinase/DNA‑binding transcriptional dual regulator
RA	71,079	C→T	18.6%	R231R (CGC→CGT)	araC →	DNA‑binding transcriptional dual regulator
RA	71,082	T→C	18.6%	I232I (ATT→ATC)	araC →	DNA‑binding transcriptional dual regulator
RA	71,085	T→C	15.1%	S233S (AGT→AGC)	araC →	DNA‑binding transcriptional dual regulator
RA	155,463	A→T	100%	*247K (TAA→AAA)	ecpD ←	predicted periplasmic pilin chaperone
RA	158,626	G→A	13.0%	S167S (AGC→AGT)	pcnB ←	poly(A) polymerase I
RA	234,234	C→T	59.5%	L183L (TTG→TTA)	gloB ←	predicted hydroxyacylglutathione hydrolase
RA	236,101	A→C	45.2%	D12A (GAT→GCT)	dnaQ →	DNA polymerase III epsilon subunit
RA	236,107	A→C	45.2%	E14A (GAA→GCA)	dnaQ →	DNA polymerase III epsilon subunit
RA	264,394	T→C	44.4%	N13D (AAC→GAC)	yafX ←	hypothetical protein
RA	344,381	G→A	32.0%	intergenic (+166/‑247)	yahL → / → yahM	hypothetical protein/hypothetical protein
RA	419,576	G→A	61.5%	A254A (GCG→GCA)	brnQ →	predicted branched chain amino acid transporter
RA	505,179	C→T	68.3%	L348L (CTG→TTG)	ushA →	bifunctional UDP‑sugar hydrolase and 5'‑nucleotidase
RA	515,934	C→T	100%	A43V (GCG→GTG)	ybbM →	predicted inner membrane protein
RA	531,446	C→T	28.0%	intergenic (‑1/‑229)	ybbS ← / → allA	transcriptional activator of the allD operon/ureidoglycolate hydrolase
RA	547,831:1	+G	100%	pseudogene (251/261 nt) pseudogene (251/1259 nt)	ylbE → ylbE →	ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein
RA	556,858	A→T	100%	L36Q (CTG→CAG)	folD ←	bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase
RA	579,794	A→G	44.7%	intergenic (+485/‑263)	ybcW → / → nohB	hypothetical protein/DNA packaging protein
RA	746,293	C→T	39.3%	A236V (GCC→GTC)	ybgL →	predicted lactam utilization protein
RA	795,129	C→T	65.5%	intergenic (‑63/‑66)	modE ← / → ybhT	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	827,597	C→T	100%	P26P (CCG→CCA)	ybhS ←	predicted transporter subunit
RA	848,718	A→G	47.4%	intergenic (‑292/+112)	glnH ← / ← dps	glutamine transporter subunit/Fe‑binding and storage protein
RA	904,996	G→A	100%	intergenic (‑107/‑19)	ybjP ← / → ybjQ	predicted lipoprotein/conserved hypothetical protein
RA	906,962	G→A	52.2%	H72Y (CAC→TAC)	ybjS ←	predicted NAD(P)H oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	913,779	A→G	72.4%	L153P (CTG→CCG)	hcp ←	hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases
RA	978,430	A→G	26.5%	E561E (GAA→GAG)	mukB →	fused chromosome partitioning proteins
RA	997,073	C→T	100%	L98L (TTG→TTA)	ssuA ←	alkanesulfonate transporter subunit
RA	1,020,867	A→G	100%	S159P (TCC→CCC)	sulA ←	SOS cell division inhibitor
RA	1,032,491	C→T	100%	intergenic (‑357/‑70)	serT ← / → hyaA	tRNA‑Ser/hydrogenase 1, small subunit
RA	1,057,926	G→A	77.3%	R151W (CGG→TGG)	torR ←	DNA‑binding response regulator in two‑component regulatory system with TorS
RA	1,068,568	T→A	100%	G22G (GGT→GGA)	ymdF →	conserved hypothetical protein
RA	1,093,686	T→C	100%	V130A (GTA→GCA)	ycdT →	predicted diguanylate cyclase
RA	1,111,828:1	+C	100%	coding (917/1536 nt)	mdoG →	glucan biosynthesis protein, periplasmic
RA	1,172,268	T→C	100%	K1092E (AAG→GAG)	mfd ←	transcription‑repair coupling factor
RA	1,204,267	C→T	49.0%	V82I (GTT→ATT)	ymfK ←	repressor protein phage e14
RA	1,210,013	T→C	34.2%	L102P (CTG→CCG)	ymfS →	hypothetical protein
RA	1,244,320	C→T	100%	C113Y (TGC→TAC)	ldcA ←	L,D‑carboxypeptidase A
MC JC	1,301,041	Δ1,336 bp	100%		insC–insD	insC, insD
RA	1,303,631	C→T	100%	Q246Y (CAG→TAT)	oppA →	oligopeptide transporter subunit
RA	1,303,633	G→T	100%	Q246Y (CAG→TAT)	oppA →	oligopeptide transporter subunit
RA	1,373,368	G→A	100%	R480H (CGT→CAT)	ycjM →	predicted glucosyltransferase
RA	1,427,990	G→A	43.6%	intergenic (+296/‑178)	ydaY → / → ynaA	hypothetical protein/predicted tail protein
RA	1,436,722	T→C	17.4%	intergenic (‑751/+177)	ynaE ← / ← uspF	predicted DNA‑binding transcriptional regulator/stress‑induced protein, ATP‑binding protein
RA	1,482,053	A→G	50.0%	D401G (GAT→GGT)	ynbC →	predicted hydrolase
RA	1,521,063	C→T	100%	S108F (TCC→TTC)	yncB →	predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
RA	1,569,965	T→C	100%	Q191Q (CAA→CAG)	yddW ←	predicted liprotein
RA	1,588,010	T→G	48.0%	D64A (GAC→GCC)	ydeP ←	predicted oxidoreductase
RA	1,692,839	G→A	100%	G425D (GGT→GAT)	ydgA →	conserved hypothetical protein
RA	1,742,822	A→G	63.0%	S400G (AGC→GGC)	ydhC →	predicted transporter
RA	1,775,080	T→C	100%	F285F (TTT→TTC)	ydiN →	predicted transporter
RA	1,793,663	G→A	17.0%	V24V (GTC→GTT)	ydiV ←	conserved hypothetical protein
RA	1,832,108	C→T	52.2%	T124T (ACG→ACA)	astA ←	arginine succinyltransferase
RA	1,927,287	T→C	100%	L45P (CTT→CCT)	yobB →	conserved hypothetical protein
RA	1,935,986	C→T	81.5%	M111I (ATG→ATA)	edd ←	6‑phosphogluconate dehydratase
RA	1,965,064	G→A	100%	I567I (ATC→ATT)	flhA ←	predicted flagellar export pore protein
RA	1,995,272	T→C	54.5%	S524S (TCA→TCG)	uvrC ←	excinuclease UvrABC, endonuclease subunit
RA	2,096,084	G→A	16.9%	E160E (GAG→GAA)	hisB →	fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase
RA	2,157,782	T→C	73.7%	L128S (TTG→TCG)	mdtB →	multidrug efflux system, subunit B
RA	2,160,543	C→T	100%	F7F (TTC→TTT)	mdtC →	multidrug efflux system, subunit C
RA	2,172,235	C→T	29.8%	pseudogene (42/447 nt) pseudogene (1636/2041 nt)	gatR ← gatR ←	DNA‑binding transcriptional regulator, N‑ter fragment; ECK2083:JW5340:b2087 DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
MC JC	2,176,983	Δ1,199 bp	100%		[gatA]–[gatA]	[gatA], insH, [gatA]
RA	2,313,823	T→C	36.0%	E349G (GAA→GGA)	yojL ←	predicted thiamine biosynthesis lipoprotein
RA	2,315,568	A→G	100%	G172G (GGT→GGC)	ompC ←	outer membrane porin protein C
MC JC	2,320,795	Δ1,336 bp	100%		insD–[rcsC]	insD, insC, [rcsC]
RA	2,324,489	C→A	47.5%	A4S (GCA→TCA)	rcsC ←	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA	2,350,543	G→A	40.0%	V337I (GTA→ATA)	nrdA →	ribonucleoside diphosphate reductase 1, alpha subunit
RA	2,397,191	A→G	55.1%	F174S (TTC→TCC)	nuoM ←	NADH:ubiquinone oxidoreductase, membrane subunit M
RA	2,426,403	G→A	30.8%	G113R (GGG→AGG)	yfcG →	predicted glutathione S‑transferase
RA	2,501,495	G→A	100%	S135S (TCG→TCA)	ddg →	palmitoleoyl‑acyl carrier protein (ACP)‑dependent acyltransferase
RA	2,594,104	G→A	100%	H138Y (CAT→TAT)	ypfI ←	predicted hydrolase
RA	2,669,838	T→C	100%	V92A (GTT→GCT)	hcaC →	3‑phenylpropionate dioxygenase, predicted ferredoxin subunit
RA	2,697,845	G→A	68.9%	G144D (GGT→GAT)	yfhH →	predicted DNA‑binding transcriptional regulator
RA	2,710,918	A→T	100%	V168E (GTG→GAG)	yfiC ←	predicted methyltransferase
RA	2,773,435	T→C	22.5%	L488L (TTG→CTG)	yfjW →	predicted inner membrane protein
RA	2,777,419:1	+A	100%	coding (3964/4581 nt)	ypjA ←	adhesin‑like autotransporter
RA	2,794,102	G→A	100%	L398L (TTG→TTA)	gabP →	gamma‑aminobutyrate transporter
RA	2,821,480	T→C	100%	T316A (ACC→GCC)	recA ←	DNA strand exchange and recombination protein with protease and nuclease activity
RA	2,840,761	A→G	71.9%	E372E (GAA→GAG)	ascB →	cryptic 6‑phospho‑beta‑glucosidase
RA	2,860,110	G→A	78.3%	V9I (GTC→ATC)	ygbJ →	predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain
RA	2,866,110	T→A	100%	intergenic (‑20/+160)	rpoS ← / ← nlpD	RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein
RA	2,867,123	G→A	100%	P96L (CCG→CTG)	nlpD ←	predicted outer membrane lipoprotein
RA	2,885,984	C→T	100%	intergenic (‑109/+250)	ygcB ← / ← cysH	conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase
RA	2,893,179	A→C	100%	I110L (ATT→CTT)	ygcP →	predicted anti‑terminator regulatory protein
RA	2,906,931	A→G	57.5%	V464V (GTT→GTC)	pyrG ←	CTP synthetase
RA	2,910,539	C→A	81.2%	R590L (CGC→CTC)	relA ←	(p)ppGpp synthetase I/GTP pyrophosphokinase
RA	2,916,386	G→A	100%	E892K (GAA→AAA)	barA →	hybrid sensory histidine kinase, in two‑component regulatory system with UvrY
RA	2,938,519	A→G	17.0%	I166V (ATC→GTC)	fucR →	DNA‑binding transcriptional activator
RA	2,997,363:1	+C	100%	coding (122/795 nt)	ygeQ ←	hypothetical protein
RA	3,013,681	G→A	59.6%	V11V (GTC→GTT)	yqeC ←	conserved hypothetical protein
RA	3,061,031	A→G	78.3%	Q509R (CAG→CGG)	yliK →	methylmalonyl‑CoA mutase
RA	3,205,103	A→G	79.4%	intergenic (‑191/‑16)	ygiP ← / → ttdA	predicted DNA‑binding transcriptional regulator/L‑tartrate dehydratase, alpha subunit
RA	3,219,258	T→C	29.0%	F379S (TTC→TCC)	ygjG →	putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
RA	3,232,470	A→G	32.5%	L111L (TTG→CTG)	ygjM ←	predicted DNA‑binding transcriptional regulator
MC JC	3,261,134	Δ1,199 bp	100%		insH–[tdcD]	insH, [tdcD]
RA	3,311,878	G→A	40.0%	P252L (CCG→CTG)	truB ←	tRNA pseudouridine synthase
RA	3,343,341	T→C	28.9%	I36T (ATC→ACC)	yhbN →	predicted transporter subunit
RA	3,381,341	T→C	37.5%	S248S (AGT→AGC)	degQ →	serine endoprotease, periplasmic
RA	3,442,070	A→G	40.0%	T497A (ACG→GCG)	thiC →	thiamin (pyrimidine moiety) biosynthesis protein
RA	3,447,843	A→G	76.9%	V1163V (GTT→GTC)	rpoC ←	RNA polymerase, beta prime subunit
RA	3,567,710	T→C	100%	R102R (CGT→CGC)	yihQ →	alpha‑glucosidase
RA	3,573,836	A→G	63.2%	V200A (GTG→GCG)	yihN ←	predicted transporter
RA	3,587,198	C→T	53.5%	E840K (GAA→AAA)	polA ←	fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease
RA	3,591,880	C→T	56.9%	M201I (ATG→ATA)	yihF ←	conserved hypothetical protein
RA	3,622,543	C→T	29.2%	A362A (GCG→GCA)	metE ←	5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase
RA	3,634,018	T→C	22.7%	V46A (GTA→GCA)	yigF →	conserved inner membrane protein
RA	3,682,573	G→A	62.5%	L211L (CTG→TTG)	ilvD ←	dihydroxyacid dehydratase
RA	3,709,115	C→T	71.8%	E138E (GAG→GAA)	asnA ←	asparagine synthetase A
RA	3,714,423	C→T	40.9%	H61Y (CAC→TAC)	atpI →	ATP synthase, membrane‑bound accesory subunit
MC JC	3,742,938	Δ1,336 bp	100%		insD–insC	insD, insC
MC JC	3,746,913	Δ1,199 bp	100%		[tnaB]–[tnaB]	[tnaB], insH, [tnaB]
MC JC	3,750,593	Δ1,199 bp	100%		insH	insH
RA	3,783,965	C→T	35.9%	G13D (GGC→GAC)	yidI ←	predicted inner membrane protein
RA	3,792,107	Δ1 bp	100%	coding (315/1320 nt)	uhpC →	membrane protein regulates uhpT expression
RA	3,798,160	T→C	14.9%	M49T (ATG→ACG)	yicN →	conserved hypothetical protein
RA	3,815,914	T→C	63.2%	N702D (AAT→GAT)	spoT ←	bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,824,280	T→C	100%	pseudogene (413/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,326	T→C	100%	pseudogene (459/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,362	A→T	100%	pseudogene (495/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,368	G→A	100%	pseudogene (501/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,374	C→T	100%	pseudogene (507/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,380	2 bp→AA	100%	pseudogene (513‑514/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,410	T→A	100%	pseudogene (543/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,514	T→C	100%	pseudogene (647/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,524	T→G	100%	pseudogene (657/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,824,533:1	+G	100%	pseudogene (666/687 nt)	rph →	ECK3633:JW3618:b3643; ribonuclease PH
RA	3,832,029	A→G	46.7%	intergenic (‑152/‑290)	kdtA ← / → rfaQ	3‑deoxy‑D‑manno‑octulosonic‑acid transferase/lipopolysaccharide core biosynthesis protein
RA	3,861,751	T→C	51.4%	N423S (AAC→AGC)	lldP ←	L‑lactate permease
RA	3,918,430	G→A	33.3%	L264L (CTG→TTG)	insK ←	IS150 conserved protein InsB
RA	4,025,948	A→G	40.0%	I268T (ATC→ACC)	nikA ←	nickel transporter subunit
RA	4,031,980	T→C	52.6%	N663D (AAC→GAC)	zntA ←	zinc, cobalt and lead efflux system
RA	4,066,786	C→T	100%	intergenic (+144/‑129)	asd → / → glgB	aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding/1,4‑alpha‑glucan branching enzyme
RA	4,111,845	A→C	24.1%	L702R (CTG→CGG)	yrfF ←	predicted inner membrane protein
RA	4,155,146:1	+A	100%	coding (783/870 nt)	prkB ←	predicted phosphoribulokinase
RA	4,174,189	C→T	43.7%	intergenic (+20/+9)	bfr → / ← gspO	bacterioferritin, iron storage and detoxification protein/bifunctional prepilin leader peptidase and methylase
RA	4,182,652	C→T	37.5%	V464M (GTG→ATG)	gspD ←	general secretory pathway component, cryptic
RA	4,271,811	A→G	69.0%	Y369C (TAT→TGT)	tyrB →	tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent
RA	4,295,565	T→C	41.8%	F154F (TTT→TTC)	nrfE →	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA	4,301,561	G→A	24.5%	D429D (GAC→GAT)	fdhF ←	formate dehydrogenase‑H, selenopolypeptide subunit
RA	4,308,687	G→A	34.3%	I464I (ATC→ATT)	yjcS ←	predicted alkyl sulfatase
MC JC	4,310,365	Δ1,199 bp	100%		insH–[alsK]	insH, [alsK]
RA	4,371,273	Δ2 bp	100%	intergenic (‑6/+299)	dcuA ← / ← aspA	C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA	4,414,112	G→A	18.9%	L52L (TTG→TTA)	rlmB →	23S rRNA (Gm2251)‑methyltransferase
RA	4,491,067	G→A	100%	V56V (GTG→GTA)	yjgP →	conserved inner membrane protein
RA	4,501,500	A→G	35.1%	Q23Q (CAA→CAG)	intB →	predicted integrase
RA	4,501,608	A→G	100%	K59K (AAA→AAG)	intB →	predicted integrase
RA	4,528,968	A→G	100%	L242P (CTA→CCA)	yjhH ←	predicted lyase/synthase
RA	4,547,402	Δ1 bp	100%	intergenic (+87/‑395)	fimE → / → fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
RA	4,548,379	G→A	73.1%	intergenic (+34/‑31)	fimA → / → fimI	major type 1 subunit fimbrin/fimbrial protein involved in type 1 pilus biosynthesis
RA	4,549,753	C→T	100%	intergenic (+42/‑25)	fimC → / → fimD	chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis
RA	4,563,589	T→A	100%	K207M (AAG→ATG)	iadA ←	isoaspartyl dipeptidase
RA	4,645,120	T→C	24.4%	S13P (TCC→CCC)	yjjY →	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3575	3577	3	7 [0]	[0] 9	thrB	homoserine kinase
*	*	÷	W3110S.gb	9582	9602	21	6 [0]	[1] 2	mog	predicted molybdochelatase
*	*	÷	W3110S.gb	23697	23713	17	2 [0]	[0] 4	ileS	isoleucyl‑tRNA synthetase
*	*	÷	W3110S.gb	26587	26606	20	4 [0]	[1] 4	ispH	1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate reductase, 4Fe‑4S protein
*	*	÷	W3110S.gb	31694	31701	8	3 [0]	[0] 11	carB	carbamoyl‑phosphate synthase large subunit
*	*	÷	W3110S.gb	54523	54553	31	2 [0]	[0] 2	surA	peptidyl‑prolyl cis‑trans isomerase
*	*	÷	W3110S.gb	62290	62324	35	3 [1]	[1] 4	hepA	RNA polymerase‑associated helicase protein
*	*	÷	W3110S.gb	62793	62850	58	3 [1]	[0] 4	hepA	RNA polymerase‑associated helicase protein
*	*	÷	W3110S.gb	66360	66361	2	2 [0]	[0] 5	araD	L‑ribulose‑5‑phosphate 4‑epimerase
*	*	÷	W3110S.gb	73849	73910	62	6 [1]	[1] 4	thiP	fused subunits of thiamin transporter and membrane components of ABC superfamily
*	*	÷	W3110S.gb	74490	74495	6	5 [0]	[1] 5	thiP	fused subunits of thiamin transporter and membrane components of ABC superfamily
*	*	÷	W3110S.gb	76772	76792	21	3 [1]	[0] 5	sgrR	DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	80337	80361	25	3 [0]	[0] 3	leuC	3‑isopropylmalate isomerase subunit, dehydratase component
*	*	÷	W3110S.gb	102616	102619	4	2 [0]	[0] 7	ddlB	D‑Alanine:D‑alanine ligase
*	*	÷	W3110S.gb	111047	111047	1	2 [0]	[0] 6	mutT	nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP
*	*	÷	W3110S.gb	112321	112351	31	2 [1]	[0] 4	yacF	conserved hypothetical protein
*	*	÷	W3110S.gb	116394	116401	8	3 [1]	[0] 12	hofB	conserved hypothetical protein with nucleoside triphosphate hydrolase domain
*	*	÷	W3110S.gb	117756	117783	28	2 [1]	[0] 2	nadC	quinolinate phosphoribosyltransferase
*	*	÷	W3110S.gb	126240	126255	16	2 [1]	[0] 5	aceF	pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2
*	*	÷	W3110S.gb	128789	128796	8	2 [1]	[0] 2	lpd	lipoamide dehydrogenase, E3 component is part of three enzyme complexes
*	*	÷	W3110S.gb	160932	160995	64	5 [1]	[0] 2	sfsA	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	163650	163692	43	4 [1]	[0] 3	hrpB	predicted ATP‑dependent helicase
*	*	÷	W3110S.gb	171659	171692	34	3 [0]	[1] 3	fhuB	fused subunits of iron‑hydroxamate transporter and membrane components of ABC superfamily transporter
*	*	÷	W3110S.gb	172194	172220	27	3 [1]	[1] 2	fhuB	fused subunits of iron‑hydroxamate transporter and membrane components of ABC superfamily transporter
*	*	÷	W3110S.gb	183623	183630	8	7 [0]	[0] 2	cdaR/yaeH	DNA‑binding transcriptional regulator/conserved hypothetical protein
*	*	÷	W3110S.gb	185822	185840	19	11 [1]	[1] 5	dapD	2,3,4,5‑tetrahydropyridine‑2‑carboxylate N‑succinyltransferase
*	*	÷	W3110S.gb	188597	188616	20	5 [0]	[0] 3	glnD	uridylyltransferase
*	*	÷	W3110S.gb	191241	191261	21	6 [1]	[1] 6	tsf	protein chain elongation factor EF‑Ts
*	*	÷	W3110S.gb	191729	191731	3	2 [0]	[0] 4	tsf/pyrH	protein chain elongation factor EF‑Ts/uridylate kinase
*	*	÷	W3110S.gb	243167	243176	10	8 [0]	[0] 3	fadE	acyl coenzyme A dehydrogenase
*	*	÷	W3110S.gb	253182	253188	7	3 [0]	[0] 2	yafP/ykfJ	predicted acyltransferase with acyl‑CoA N‑acyltransferase domain/conserved hypothetical protein
*	*	÷	W3110S.gb	256414	256430	17	8 [0]	[1] 2	gpt	guanine‑hypoxanthine phosphoribosyltransferase
*	*	÷	W3110S.gb	259774	259818	45	2 [1]	[0] 6	proB	gamma‑glutamate kinase
*	*	÷	W3110S.gb	263009	263018	10	5 [0]	[1] 13	yafW	antitoxin of the YkfI‑YafW toxin‑antitoxin system
*	*	÷	W3110S.gb	275996	276007	12	7 [0]	[0] 2	mmuM	S‑methylmethionine:homocysteine methyltransferase
*	*	÷	W3110S.gb	276485	276495	11	3 [1]	[0] 3	mmuM	S‑methylmethionine:homocysteine methyltransferase
*	*	÷	W3110S.gb	280848	280850	3	2 [1]	[0] 2	yagA	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	281302	281305	4	2 [0]	[0] 2	yagA/yagE	predicted DNA‑binding transcriptional regulator/predicted lyase/synthase
*	*	÷	W3110S.gb	281762	281779	18	5 [1]	[0] 4	yagE	predicted lyase/synthase
*	*	÷	W3110S.gb	282873	282894	22	9 [0]	[0] 3	yagF	predicted dehydratase
*	*	÷	W3110S.gb	283119	283124	6	4 [0]	[1] 3	yagF	predicted dehydratase
*	*	÷	W3110S.gb	285631	285661	31	4 [1]	[1] 3	yagG	predicted sugar transporter
*	*	÷	W3110S.gb	298377	298377	1	4 [0]	[0] 7	yagR	predicted oxidoreductase with molybdenum‑binding domain
*	*	÷	W3110S.gb	298836	298868	33	4 [1]	[0] 5	yagR	predicted oxidoreductase with molybdenum‑binding domain
*	*	÷	W3110S.gb	299027	299040	14	5 [1]	[0] 2	yagR	predicted oxidoreductase with molybdenum‑binding domain
*	*	÷	W3110S.gb	299139	299174	36	2 [0]	[0] 4	yagR	predicted oxidoreductase with molybdenum‑binding domain
*	*	÷	W3110S.gb	301677	301697	21	6 [1]	[1] 3	yagT	predicted xanthine dehydrogenase, 2Fe‑2S subunit
*	*	÷	W3110S.gb	336526	336526	1	4 [0]	[0] 4	yahF	predicted acyl‑CoA synthetase with NAD(P)‑binding domain and succinyl‑CoA synthetase domain
*	*	÷	W3110S.gb	336708	336727	20	2 [0]	[0] 10	yahF	predicted acyl‑CoA synthetase with NAD(P)‑binding domain and succinyl‑CoA synthetase domain
*	*	÷	W3110S.gb	336798	336835	38	9 [0]	[1] 3	yahF	predicted acyl‑CoA synthetase with NAD(P)‑binding domain and succinyl‑CoA synthetase domain
*	*	÷	W3110S.gb	340384	340399	16	3 [1]	[0] 3	yahJ	predicted deaminase with metallo‑dependent hydrolase domain
*	*	÷	W3110S.gb	341639	341643	5	3 [0]	[0] 2	yahJ	predicted deaminase with metallo‑dependent hydrolase domain
*	*	÷	W3110S.gb	349083–349137	349149	13–67	3 [0]	[0] 2	prpB/prpC	2‑methylisocitrate lyase/2‑methylcitrate synthase
*	*	÷	W3110S.gb	352532	352557	26	3 [0]	[0] 4	prpE	predicted propionyl‑CoA synthetase with ATPase domain
*	*	÷	W3110S.gb	357179	357246	68	6 [1]	[1] 8	cynR	DNA‑binding transcriptional dual regulator
*	*	÷	W3110S.gb	358095	358102	8	4 [0]	[0] 3	cynT	carbonic anhydrase
*	*	÷	W3110S.gb	359494	359499	6	7 [0]	[1] 2	cynX	predicted cyanate transporter
*	*	÷	W3110S.gb	361229	361268	40	3 [0]	[1] 3	lacY	lactose/galactose transporter
*	*	÷	W3110S.gb	369316	369316	1	5 [0]	[0] 2	mhpA	3‑(3‑hydroxyphenyl)propionate hydroxylase
*	*	÷	W3110S.gb	371055	371068	14	5 [1]	[0] 3	mhpC	2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase
*	*	÷	W3110S.gb	374357–374390	374445	56–89	2 [1]	[1] 4	mhpE/mhpT	4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/predicted 3‑hydroxyphenylpropionic transporter
*	*	÷	W3110S.gb	375290	375296	7	2 [0]	[1] 4	mhpT	predicted 3‑hydroxyphenylpropionic transporter
*	*	÷	W3110S.gb	377894	377910	17	7 [0]	[1] 8	frmA	alcohol dehydrogenase class III/glutathione‑dependent formaldehyde dehydrogenase
*	*	÷	W3110S.gb	385716	385716	1	5 [0]	[0] 3	tauB	taurine transporter subunit
*	*	÷	W3110S.gb	386806	386813	8	8 [0]	[1] 3	tauC	taurine transporter subunit
*	*	÷	W3110S.gb	395011	395015	5	3 [0]	[0] 6	ampH	beta‑lactamase/D‑alanine carboxypeptidase
*	*	÷	W3110S.gb	397258	397307	50	2 [0]	[0] 10	yaiW	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	397594	397601	8	9 [1]	[1] 2	yaiW	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	402840	402852	13	2 [0]	[1] 5	psiF/yaiC	conserved hypothetical protein/predicted diguanylate cyclase
*	*	÷	W3110S.gb	408555	408557	3	7 [0]	[0] 3	rdgC	DNA‑binding protein, non‑specific
*	*	÷	W3110S.gb	412727	412727	1	2 [0]	[0] 3	sbcC	exonuclease, dsDNA, ATP‑dependent
*	*	÷	W3110S.gb	421651	421666	16	4 [1]	[0] 2	proY/malZ	predicted cryptic proline transporter/maltodextrin glucosidase
*	*	÷	W3110S.gb	422766	422771	6	3 [0]	[0] 5	malZ	maltodextrin glucosidase
*	*	÷	W3110S.gb	423905	423916	12	3 [1]	[0] 3	yajB	conserved hypothetical protein
*	*	÷	W3110S.gb	462651	462661	11	2 [0]	[0] 5	ppiD	peptidyl‑prolyl cis‑trans isomerase
*	*	÷	W3110S.gb	471796	471796	1	5 [0]	[0] 12	mdlB/glnK	fused predicted multidrug transporter subunits and ATP binding components of ABC superfamily/nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB
*	*	÷	W3110S.gb	474213	474238	26	4 [1]	[0] 3	tesB	acyl‑CoA thioesterase II
*	*	÷	W3110S.gb	475755	475788	34	5 [1]	[0] 16	ybaZ/ybaA	predicted methyltransferase/conserved hypothetical protein
*	*	÷	W3110S.gb	481584	481603	20	2 [0]	[0] 2	acrB	multidrug efflux system protein
*	*	÷	W3110S.gb	483332	483337	6	5 [0]	[0] 6	acrB	multidrug efflux system protein
*	*	÷	W3110S.gb	484532	484568	37	7 [0]	[1] 3	acrA	multidrug efflux system
*	*	÷	W3110S.gb	486585	486594	10	3 [0]	[0] 2	kefA	fused mechanosensitive channel proteins
*	*	÷	W3110S.gb	489253	489256	4	2 [0]	[0] 6	kefA/ybaM	fused mechanosensitive channel proteins/hypothetical protein
*	*	÷	W3110S.gb	489486	489496	11	2 [1]	[0] 2	[ybaM]	[ybaM]
*	*	÷	W3110S.gb	489754	489798	45	8 [0]	[0] 3	priC	primosomal replication protein N''
*	*	÷	W3110S.gb	519394	519411	18	3 [1]	[0] 3	ybbA	predicted transporter subunit
*	*	÷	W3110S.gb	522650	522658	9	3 [1]	[0] 9	rhsD	rhsD element protein
*	*	÷	W3110S.gb	523364	523385	22	3 [0]	[1] 2	rhsD	rhsD element protein
*	*	÷	W3110S.gb	535077	535089	13	5 [0]	[1] 3	hyi	hydroxypyruvate isomerase
*	*	÷	W3110S.gb	539746	539748	3	2 [1]	[0] 2	allB/ybbY	allantoinase/predicted uracil/xanthine transporter
*	*	÷	W3110S.gb	544681	544704	24	3 [1]	[1] 5	allD	ureidoglycolate dehydrogenase
*	*	÷	W3110S.gb	545556	545560	5	2 [0]	[0] 5	allD	ureidoglycolate dehydrogenase
*	*	÷	W3110S.gb	547412	547423	12	3 [0]	[0] 5	fdrA	predicted acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain
*	*	÷	W3110S.gb	573871–575013	576010	998–2140	2 [0]	[1] 3	insH–[nmpC]	insH,[nmpC]
*	*	÷	W3110S.gb	591535	591587	53	2 [1]	[1] 5	nfrB	bacteriophage N4 receptor, inner membrane subunit
*	*	÷	W3110S.gb	601877	601882	6	10 [0]	[0] 3	pheP	phenylalanine transporter
*	*	÷	W3110S.gb	615923	615925	3	3 [0]	[0] 2	entF	enterobactin synthase multienzyme complex component, ATP‑dependent
*	*	÷	W3110S.gb	623859	623866	8	2 [0]	[1] 8	fepB/entC	iron‑enterobactin transporter subunit/isochorismate synthase 1
*	*	÷	W3110S.gb	632408	632411	4	7 [0]	[0] 2	ybdH	predicted oxidoreductase
*	*	÷	W3110S.gb	633320	633340	21	4 [0]	[0] 4	ybdL	methionine aminotransferase, PLP‑dependent
*	*	÷	W3110S.gb	640586	640640	55	15 [0]	[0] 3	ahpF/uspG	alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12
*	*	÷	W3110S.gb	641237	641240	4	7 [0]	[0] 6	uspG/ybdR	universal stress protein UP12/predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
*	*	÷	W3110S.gb	642825	642846	22	3 [1]	[1] 10	rnk	regulator of nucleoside diphosphate kinase
*	*	÷	W3110S.gb	647495	647495	1	3 [0]	[0] 4	citF	citrate lyase, citrate‑ACP transferase (alpha) subunit
*	*	÷	W3110S.gb	651901	651905	5	2 [0]	[0] 5	citA	sensory histidine kinase in two‑component regulatory system with citB
*	*	÷	W3110S.gb	654214–655409	655418	10–1205	17 [0]	[0] 2	[dcuC]–[dcuC]	[dcuC],insH,[dcuC]
*	*	÷	W3110S.gb	664623	664634	12	5 [0]	[1] 2	rlpA	minor lipoprotein
*	*	÷	W3110S.gb	665348	665368	21	6 [1]	[1] 5	rlpA	minor lipoprotein
*	*	÷	W3110S.gb	668712	668717	6	2 [1]	[0] 4	ybeA	conserved hypothetical protein
*	*	÷	W3110S.gb	678608	678624	17	3 [0]	[1] 2	djlB	predicted chaperone
*	*	÷	W3110S.gb	684935	684938	4	13 [0]	[0] 6	rihA/gltL	ribonucleoside hydrolase 1/glutamate and aspartate transporter subunit
*	*	÷	W3110S.gb	695039	695049	11	3 [0]	[0] 3	miaB	isopentenyl‑adenosine A37 tRNA methylthiolase
*	*	÷	W3110S.gb	700304	700318	15	3 [1]	[1] 2	nagD	UMP phosphatase
*	*	÷	W3110S.gb	705265	705271	7	3 [0]	[0] 4	nagE	fused N‑acetyl glucosamine specific PTS enzyme IICBA components
*	*	÷	W3110S.gb	714121	714127	7	7 [1]	[0] 2	pgm	phosphoglucomutase
*	*	÷	W3110S.gb	715980	715993	14	4 [0]	[1] 5	ybfP	hypothetical protein
*	*	÷	W3110S.gb	716731	716736	6	2 [0]	[0] 2	ybfG	hypothetical protein
*	*	÷	W3110S.gb	718232	718235	4	5 [0]	[0] 4	potE	putrescine/proton symporter
*	*	÷	W3110S.gb	721519	721571	53	12 [0]	[1] 8	kdpE	DNA‑binding response regulator in two‑component regulatory system with KdpD
*	*	÷	W3110S.gb	725031	725088	58	5 [1]	[1] 3	kdpC	potassium translocating ATPase, subunit C
*	*	÷	W3110S.gb	726771	726793	23	2 [1]	[0] 4	kdpB	potassium translocating ATPase, subunit B
*	*	÷	W3110S.gb	727820	727821	2	4 [0]	[0] 6	kdpA	potassium translocating ATPase, subunit A
*	*	÷	W3110S.gb	738513–738567	738574–738569	3–62	4 [1]	[0] 3	[ybfD]	[ybfD]
*	*	÷	W3110S.gb	742472	742495	24	3 [1]	[0] 6	ybgH	predicted transporter
*	*	÷	W3110S.gb	743725	743752	28	2 [0]	[1] 2	ybgI	conserved metal‑binding protein
*	*	÷	W3110S.gb	744914	744945	32	17 [1]	[0] 3	ybgK	predicted enzyme subunit
*	*	÷	W3110S.gb	746695	746703	9	2 [0]	[0] 3	nei	endonuclease VIII
*	*	÷	W3110S.gb	753545	753546	2	2 [0]	[0] 7	ybgD/gltA	predicted fimbrial‑like adhesin protein/citrate synthase
*	*	÷	W3110S.gb	760469	760469	1	8 [0]	[0] 2	sucA	2‑oxoglutarate decarboxylase, thiamin‑requiring
*	*	÷	W3110S.gb	760557	760587	31	3 [0]	[0] 3	sucA	2‑oxoglutarate decarboxylase, thiamin‑requiring
*	*	÷	W3110S.gb	761505	761536	32	10 [0]	[0] 7	sucA	2‑oxoglutarate decarboxylase, thiamin‑requiring
*	*	÷	W3110S.gb	774775	774820	46	5 [1]	[0] 6	ybgE	conserved inner membrane protein
*	*	÷	W3110S.gb	777121	777294	174	2 [1]	[1] 5	tolA	membrane anchored protein in TolA‑TolQ‑TolR complex
*	*	÷	W3110S.gb	785572	785577	6	5 [0]	[0] 2	ybgS	conserved hypothetical protein
*	*	÷	W3110S.gb	794711	794723	13	2 [0]	[0] 6	modE	DNA‑binding transcriptional dual regulator
*	*	÷	W3110S.gb	797027	797048	22	2 [0]	[0] 5	modC	molybdate transporter subunit
*	*	÷	W3110S.gb	805076	805078	3	4 [0]	[0] 5	ybhJ	predicted hydratase
*	*	÷	W3110S.gb	805383	805405	23	3 [0]	[0] 5	ybhJ	predicted hydratase
*	*	÷	W3110S.gb	814418	814425	8	12 [0]	[0] 2	uvrB	excinulease of nucleotide excision repair, DNA damage recognition component
*	*	÷	W3110S.gb	820017	820054	38	7 [1]	[1] 7	moaE	molybdopterin synthase, large subunit
*	*	÷	W3110S.gb	821270	821283	14	7 [1]	[0] 3	ybhM	conserved inner membrane protein
*	*	÷	W3110S.gb	824416	824436	21	5 [1]	[0] 11	ybhP	predicted DNase
*	*	÷	W3110S.gb	824944	824963	20	2 [0]	[0] 2	ybhP/ybhQ	predicted DNase/predicted inner membrane protein
*	*	÷	W3110S.gb	825242	825258	17	7 [0]	[0] 3	ybhQ	predicted inner membrane protein
*	*	÷	W3110S.gb	828047	828063	17	4 [1]	[0] 7	ybhF	fused predicted transporter subunits and ATP‑binding components of ABC superfamily
*	*	÷	W3110S.gb	828639	828682	44	5 [1]	[0] 3	ybhF	fused predicted transporter subunits and ATP‑binding components of ABC superfamily
*	*	÷	W3110S.gb	833491	833533	43	2 [0]	[0] 3	[dinG]	[dinG]
*	*	÷	W3110S.gb	834709	834721	13	2 [0]	[1] 3	dinG	ATP‑dependent DNA helicase
*	*	÷	W3110S.gb	841562	841595	34	2 [1]	[1] 3	fiu	predicted iron outer membrane transporter
*	*	÷	W3110S.gb	843871	843874	4	8 [0]	[0] 3	ybiO	predicted mechanosensitive channel
*	*	÷	W3110S.gb	845864	845893	30	2 [1]	[0] 4	ybiO	predicted mechanosensitive channel
*	*	÷	W3110S.gb	846642	846643	2	4 [0]	[0] 10	glnQ	glutamine transporter subunit
*	*	÷	W3110S.gb	853765	853784	20	8 [1]	[0] 2	mntR	transcriptional regulator of mntH
*	*	÷	W3110S.gb	854314	854461	148	2 [0]	[1] 10	ybiR	predicted transporter
*	*	÷	W3110S.gb	854595	854628	34	3 [1]	[0] 3	ybiR	predicted transporter
*	*	÷	W3110S.gb	859130	859138	9	3 [1]	[0] 6	ybiU	hypothetical protein
*	*	÷	W3110S.gb	865821	865903	83	3 [0]	[0] 2	moeA	molybdopterin biosynthesis protein
*	*	÷	W3110S.gb	871534	871563	30	2 [1]	[0] 4	yliC	predicted peptide transporter subunit
*	*	÷	W3110S.gb	872385	872389	5	9 [0]	[0] 5	yliD	predicted peptide transporter subunit
*	*	÷	W3110S.gb	877262	877280	19	3 [0]	[0] 5	yliG	predicted SAM‑dependent methyltransferase
*	*	÷	W3110S.gb	877734	877752	19	5 [1]	[0] 4	yliG	predicted SAM‑dependent methyltransferase
*	*	÷	W3110S.gb	878072	878084	13	2 [0]	[0] 4	yliG	predicted SAM‑dependent methyltransferase
*	*	÷	W3110S.gb	879242	879242	1	3 [0]	[0] 9	yliI	predicted dehydrogenase
*	*	÷	W3110S.gb	883658	883700	43	2 [1]	[0] 15	ybjG	undecaprenyl pyrophosphate phosphatase
*	*	÷	W3110S.gb	885870	885886	17	2 [0]	[0] 5	ybjI	conserved hypothetical protein
*	*	÷	W3110S.gb	886967	886980	14	4 [0]	[0] 2	ybjJ	predicted transporter
*	*	÷	W3110S.gb	896110	896173	64	2 [1]	[1] 2	potG	putrescine transporter subunit
*	*	÷	W3110S.gb	898944	898976	33	3 [0]	[1] 5	rumB	23S rRNA m(5)U747 methyltransferase
*	*	÷	W3110S.gb	907960	907997	38	3 [0]	[1] 5	ybjT	conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain
*	*	÷	W3110S.gb	911802	911865	64	2 [1]	[1] 4	hcr	HCP oxidoreductase, NADH‑dependent
*	*	÷	W3110S.gb	915505–915561	915638–915575	15–134	2 [0]	[0] 5	ybjE/aqpZ	predicted transporter/aquaporin
*	*	÷	W3110S.gb	919829	919846	18	2 [0]	[0] 3	macA	macrolide transporter subunit, membrane fusion protein (MFP) component
*	*	÷	W3110S.gb	921141	921170	30	4 [1]	[0] 3	macB	fused macrolide transporter subunits and ATP‑binding component and membrane component of ABC superfamily
*	*	÷	W3110S.gb	925912	925930	19	2 [0]	[0] 2	clpA	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity
*	*	÷	W3110S.gb	927812	927825	14	2 [0]	[0] 2	aat	leucyl/phenylalanyl‑tRNA‑protein transferase
*	*	÷	W3110S.gb	932085	932087	3	3 [0]	[0] 3	trxB	thioredoxin reductase, FAD/NAD(P)‑binding
*	*	÷	W3110S.gb	944779	944795	17	2 [0]	[0] 10	dmsC	dimethyl sulfoxide reductase, anaerobic, subunit C
*	*	÷	W3110S.gb	945027	945048	22	6 [1]	[0] 2	dmsC	dimethyl sulfoxide reductase, anaerobic, subunit C
*	*	÷	W3110S.gb	947664	947675	12	2 [0]	[0] 2	ycaM	predicted transporter
*	*	÷	W3110S.gb	962776	962780	5	5 [0]	[0] 3	rpsA	30S ribosomal subunit protein S1
*	*	÷	W3110S.gb	970550	970553	4	5 [0]	[0] 3	ycaQ	conserved hypothetical protein
*	*	÷	W3110S.gb	974092	974121	30	4 [0]	[0] 2	smtA	S‑adenosylmethionine‑dependent methyltransferase
*	*	÷	W3110S.gb	974532	974535	4	4 [0]	[0] 3	smtA	S‑adenosylmethionine‑dependent methyltransferase
*	*	÷	W3110S.gb	975754	975759	6	3 [0]	[1] 2	mukF	Involved in chromosome partioning, Ca2+ binding protein
*	*	÷	W3110S.gb	976891	976926	36	4 [1]	[1] 5	mukB	fused chromosome partitioning proteins
*	*	÷	W3110S.gb	977959	977961	3	3 [0]	[0] 6	mukB	fused chromosome partitioning proteins
*	*	÷	W3110S.gb	984868	984876	9	3 [0]	[0] 5	ycbL/aspC	predicted metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent
*	*	÷	W3110S.gb	988163	988190	28	6 [1]	[0] 5	asnS	asparaginyl tRNA synthetase
*	*	÷	W3110S.gb	989654	989671	18	3 [1]	[1] 4	pncB	nicotinate phosphoribosyltransferase
*	*	÷	W3110S.gb	990122	990128	7	4 [0]	[1] 8	pncB	nicotinate phosphoribosyltransferase
*	*	÷	W3110S.gb	990241	990252	12	7 [1]	[0] 2	pncB	nicotinate phosphoribosyltransferase
*	*	÷	W3110S.gb	992475	992490	16	2 [0]	[0] 13	pepN	aminopeptidase N
*	*	÷	W3110S.gb	996224	996242	19	8 [1]	[0] 5	ssuD	alkanesulfonate monooxygenase, FMNH(2)‑dependent
*	*	÷	W3110S.gb	996584	996601	18	2 [0]	[1] 2	ssuA	alkanesulfonate transporter subunit
*	*	÷	W3110S.gb	996818	996856	39	2 [0]	[0] 3	ssuA	alkanesulfonate transporter subunit
*	*	÷	W3110S.gb	1004866	1004873	8	2 [0]	[0] 5	ycbF	predicted periplasmic pilini chaperone
*	*	÷	W3110S.gb	1006059	1006083	25	2 [1]	[0] 6	pyrD	dihydro‑orotate oxidase, FMN‑linked
*	*	÷	W3110S.gb	1015730	1015734	5	3 [0]	[1] 4	ymbA	conserved hypothetical protein
*	*	÷	W3110S.gb	1019421	1019456	36	2 [1]	[0] 7	[ompA]	[ompA]
*	*	÷	W3110S.gb	1022632	1022649	18	7 [0]	[1] 11	yccS	predicted inner membrane protein
*	*	÷	W3110S.gb	1025676	1025691	16	2 [1]	[0] 5	helD	DNA helicase IV
*	*	÷	W3110S.gb	1026855	1026886	32	2 [1]	[1] 3	helD	DNA helicase IV
*	*	÷	W3110S.gb	1030623	1030631	9	10 [0]	[0] 4	yccX	predicted acylphosphatase
*	*	÷	W3110S.gb	1036653	1036699	47	3 [0]	[0] 2	hyaD	protein involved in processing of HyaA and HyaB proteins
*	*	÷	W3110S.gb	1043106	1043121	16	6 [0]	[1] 4	yccC	cryptic autophosphorylating protein tyrosine kinase Etk
*	*	÷	W3110S.gb	1047888	1047889	2	8 [0]	[0] 7	ymcA	conserved hypothetical protein
*	*	÷	W3110S.gb	1049558	1049594	37	3 [0]	[0] 3	ymcC	predicted outer membrane lipoprotein
*	*	÷	W3110S.gb	1052778	1052779	2	3 [0]	[0] 4	yccM	predicted 4Fe‑4S membrane protein
*	*	÷	W3110S.gb	1058044	1058054	11	6 [0]	[1] 6	torR	DNA‑binding response regulator in two‑component regulatory system with TorS
*	*	÷	W3110S.gb	1060880	1060883	4	5 [0]	[0] 4	torA	trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
*	*	÷	W3110S.gb	1066497	1066499	3	3 [0]	[0] 4	agp	glucose‑1‑phosphatase/inositol phosphatase
*	*	÷	W3110S.gb	1070008	1070012	5	3 [0]	[0] 5	ycdG	predicted transporter
*	*	÷	W3110S.gb	1071172	1071172	1	3 [0]	[0] 2	ycdI	predicted oxidoreductase
*	*	÷	W3110S.gb	1072822	1072863	42	3 [1]	[0] 3	ycdL	hypothetical protein
*	*	÷	W3110S.gb	1074952	1075030	79	3 [0]	[1] 4	ycdC	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	1077919	1077924	6	2 [0]	[0] 4	putA	fused DNA‑binding transcriptional regulator, proline dehydrogenase, and pyrroline‑5‑carboxylate dehydrogenase
*	*	÷	W3110S.gb	1081313	1081345	33	6 [0]	[1] 2	putP/ycdN	proline:sodium symporter/ECK1007:JW5141:b1016; hypothetical protein, N‑ter fragment
*	*	÷	W3110S.gb	1085633	1085661	29	2 [1]	[0] 4	phoH	conserved hypothetical protein with nucleoside triphosphate hydrolase domain
*	*	÷	W3110S.gb	1093778	1093785	8	2 [0]	[0] 5	ycdT	predicted diguanylate cyclase
*	*	÷	W3110S.gb	1097369	1097369	1	9 [0]	[0] 2	ycdU/serX	predicted inner membrane protein/tRNA‑Ser
*	*	÷	W3110S.gb	1097806–1097885	1097904	20–99	6 [1]	[0] 3	[serX]	[serX]
*	*	÷	W3110S.gb	1101294	1101310	17	2 [0]	[1] 7	csgG	outer membrane lipoprotein
*	*	÷	W3110S.gb	1107909	1107917	9	5 [0]	[0] 2	ymdB	conserved hypothetical protein
*	*	÷	W3110S.gb	1112230	1112246	17	2 [0]	[0] 2	mdoG	glucan biosynthesis protein, periplasmic
*	*	÷	W3110S.gb	1112723	1112723	1	2 [0]	[0] 5	mdoH	glucan biosynthesis: glycosyl transferase
*	*	÷	W3110S.gb	1116394	1116401	8	8 [0]	[0] 2	mdtG	predicted drug efflux system
*	*	÷	W3110S.gb	1127079	1127086	8	2 [0]	[0] 5	mdtH/rimJ	predicted drug efflux system/ribosomal‑protein‑S5‑alanine N‑acetyltransferase
*	*	÷	W3110S.gb	1127665	1127681	17	4 [0]	[0] 2	rimJ	ribosomal‑protein‑S5‑alanine N‑acetyltransferase
*	*	÷	W3110S.gb	1134072	1134084	13	4 [0]	[1] 10	flgD	flagellar hook assembly protein
*	*	÷	W3110S.gb	1139776	1139782	7	4 [0]	[1] 2	flgJ	muramidase
*	*	÷	W3110S.gb	1143768	1143778	11	3 [0]	[0] 17	rne	fused ribonucleaseE endoribonuclease and scaffold for formation of degradosome
*	*	÷	W3110S.gb	1144289	1144332	44	2 [0]	[1] 2	rne	fused ribonucleaseE endoribonuclease and scaffold for formation of degradosome
*	*	÷	W3110S.gb	1145453	1145468	16	8 [1]	[0] 2	rne	fused ribonucleaseE endoribonuclease and scaffold for formation of degradosome
*	*	÷	W3110S.gb	1146192	1146227	36	5 [0]	[0] 2	yceQ	hypothetical protein
*	*	÷	W3110S.gb	1148959	1148959	1	7 [0]	[0] 3	rpmF	50S ribosomal subunit protein L32
*	*	÷	W3110S.gb	1151459	1151472	14	5 [0]	[1] 6	fabD	malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
*	*	÷	W3110S.gb	1151561	1151574	14	9 [1]	[0] 2	fabD	malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
*	*	÷	W3110S.gb	1157113	1157155	43	6 [1]	[1] 3	tmk	thymidylate kinase
*	*	÷	W3110S.gb	1157697	1157719	23	7 [1]	[0] 5	holB	DNA polymerase III, delta prime subunit
*	*	÷	W3110S.gb	1160949	1160963	15	2 [0]	[0] 5	fhuE	ferric‑rhodotorulic acid outer membrane transporter
*	*	÷	W3110S.gb	1164364	1164366	3	2 [0]	[0] 3	ycfM	predicted outer membrane lipoprotein
*	*	÷	W3110S.gb	1166708	1166730	23	4 [1]	[0] 2	[ycfP]	[ycfP]
*	*	÷	W3110S.gb	1170945	1170986	42	2 [1]	[0] 4	ycfR/ycfS	hypothetical protein/conserved hypothetical protein
*	*	÷	W3110S.gb	1173185	1173219	35	4 [0]	[1] 2	mfd	transcription‑repair coupling factor
*	*	÷	W3110S.gb	1178205	1178241	37	3 [0]	[0] 3	lolD	outer membrane‑specific lipoprotein transporter subunit
*	*	÷	W3110S.gb	1181058	1181072	15	4 [0]	[0] 11	ycfX	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	1183483	1183486	4	3 [0]	[0] 4	potD	polyamine transporter subunit
*	*	÷	W3110S.gb	1183614	1183625	12	2 [0]	[0] 6	potD	polyamine transporter subunit
*	*	÷	W3110S.gb	1185744	1185766	23	4 [0]	[0] 6	potB	polyamine transporter subunit
*	*	÷	W3110S.gb	1185843	1185881	39	6 [0]	[0] 2	potB	polyamine transporter subunit
*	*	÷	W3110S.gb	1186698	1186760	63	21 [0]	[0] 2	potA	polyamine transporter subunit
*	*	÷	W3110S.gb	1196228	1196232	5	5 [0]	[0] 3	ymfC	23S rRNA pseudouridine synthase
*	*	÷	W3110S.gb	1200118	1200121	4	5 [0]	[0] 2	ymfE/lit	predicted inner membrane protein/cell death peptidase, inhibitor of T4 late gene expression
*	*	÷	W3110S.gb	1204689	1204728	40	7 [1]	[1] 3	ymfT	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	1207191	1207197	7	2 [0]	[0] 2	ymfR	hypothetical protein
*	*	÷	W3110S.gb	1207566	1207599	34	4 [0]	[1] 5	ymfO	conserved hypothetical protein
*	*	÷	W3110S.gb	1234370	1234370	1	6 [0]	[0] 2	dsbB	oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
*	*	÷	W3110S.gb	1237003	1237011	9	5 [0]	[0] 5	fadR	DNA‑binding transcriptional dual regulator
*	*	÷	W3110S.gb	1237580	1237585	6	7 [0]	[0] 8	ycgB	conserved hypothetical protein
*	*	÷	W3110S.gb	1245174	1245193	20	2 [0]	[0] 2	emtA	lytic murein endotransglycosylase E
*	*	÷	W3110S.gb	1248726	1248732	7	4 [0]	[1] 4	treA	periplasmic trehalase
*	*	÷	W3110S.gb	1251354	1251372	19	2 [0]	[0] 3	dhaK	dihydroxyacetone kinase, N‑terminal domain
*	*	÷	W3110S.gb	1259160	1259215	56	2 [1]	[1] 2	ychF	predicted GTP‑binding protein
*	*	÷	W3110S.gb	1259758	1259763	6	2 [0]	[0] 5	pth	peptidyl‑tRNA hydrolase
*	*	÷	W3110S.gb	1260167	1260192	26	5 [0]	[0] 9	pth/ychH	peptidyl‑tRNA hydrolase/predicted inner membrane protein
*	*	÷	W3110S.gb	1262264	1262279	16	5 [1]	[0] 3	ychM	predicted transporter
*	*	÷	W3110S.gb	1265580	1265588	9	2 [0]	[0] 4	hemA	glutamyl tRNA reductase
*	*	÷	W3110S.gb	1266245	1266285	41	5 [0]	[1] 5	hemA	glutamyl tRNA reductase
*	*	÷	W3110S.gb	1269109	1269110	2	2 [0]	[1] 5	ychA	predicted transcriptional regulator
*	*	÷	W3110S.gb	1273148	1273175	28	5 [0]	[1] 2	chaA	calcium/sodium:proton antiporter
*	*	÷	W3110S.gb	1273499	1273499	1	4 [0]	[0] 2	chaA/chaB	calcium/sodium:proton antiporter/predicted cation regulator
*	*	÷	W3110S.gb	1275591	1275608	18	7 [0]	[1] 4	ychP	predicted invasin
*	*	÷	W3110S.gb	1276225	1276229	5	3 [0]	[0] 4	ychP	predicted invasin
*	*	÷	W3110S.gb	1276455	1276464	10	8 [0]	[0] 2	ychP	predicted invasin
*	*	÷	W3110S.gb	1279076	1279093	18	4 [0]	[0] 5	narX	sensory histidine kinase in two‑component regulatory system with NarL
*	*	÷	W3110S.gb	1280171	1280173	3	6 [0]	[0] 4	narK	nitrate/nitrite transporter
*	*	÷	W3110S.gb	1281837	1281847	11	5 [0]	[0] 9	narG	nitrate reductase 1, alpha subunit
*	*	÷	W3110S.gb	1285426	1285428	3	4 [0]	[1] 2	narH	nitrate reductase 1, beta (Fe‑S) subunit
*	*	÷	W3110S.gb	1287286	1287311	26	6 [1]	[0] 3	narJ	molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1
*	*	÷	W3110S.gb	1288168	1288203	36	2 [0]	[0] 3	narI/ychS	nitrate reductase 1, gamma (cytochrome b(NR)) subunit/hypothetical protein
*	*	÷	W3110S.gb	1289281	1289310	30	2 [1]	[0] 2	tyrT/purU	tRNA‑Tyr/formyltetrahydrofolate hydrolase
*	*	÷	W3110S.gb	1290252	1290268	17	5 [0]	[0] 2	ychJ	conserved hypothetical protein
*	*	÷	W3110S.gb	1297666	1297675	10	2 [0]	[0] 5	adhE	fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenase and pyruvate‑formate lyase deactivase
*	*	÷	W3110S.gb	1312208	1312222	15	6 [0]	[0] 6	kch/yciI	voltage‑gated potassium channel/hypothetical protein
*	*	÷	W3110S.gb	1312641	1312657	17	9 [0]	[0] 3	yciI/tonB	hypothetical protein/membrane spanning protein in TonB‑ExbB‑ExbD complex
*	*	÷	W3110S.gb	1313710	1313732	23	3 [1]	[1] 3	yciA	predicted hydrolase
*	*	÷	W3110S.gb	1314339	1314345	7	4 [0]	[0] 3	yciB	predicted inner membrane protein
*	*	÷	W3110S.gb	1318099	1318108	10	10 [0]	[0] 3	yciG/trpA	hypothetical protein/tryptophan synthase, alpha subunit
*	*	÷	W3110S.gb	1321738	1321772	35	4 [0]	[0] 2	trpD	fused glutamine amidotransferase (component II) of anthranilate synthase and anthranilate phosphoribosyl transferase
*	*	÷	W3110S.gb	1322332	1322343	12	5 [0]	[1] 5	trpD	fused glutamine amidotransferase (component II) of anthranilate synthase and anthranilate phosphoribosyl transferase
*	*	÷	W3110S.gb	1322518	1322522	5	2 [0]	[1] 3	trpD	fused glutamine amidotransferase (component II) of anthranilate synthase and anthranilate phosphoribosyl transferase
*	*	÷	W3110S.gb	1323422	1323445	24	3 [0]	[0] 3	trpE	component I of anthranilate synthase
*	*	÷	W3110S.gb	1326523	1326531	9	11 [1]	[0] 2	yciQ	predicted inner membrane protein
*	*	÷	W3110S.gb	1327160	1327170	11	3 [0]	[0] 2	yciQ	predicted inner membrane protein
*	*	÷	W3110S.gb	1327257	1327272	16	7 [0]	[0] 2	yciQ	predicted inner membrane protein
*	*	÷	W3110S.gb	1328305	1328347	43	3 [0]	[1] 5	yciQ	predicted inner membrane protein
*	*	÷	W3110S.gb	1329221	1329305	85	5 [0]	[1] 2	rluB	23S rRNA pseudouridylate synthase
*	*	÷	W3110S.gb	1331717	1331731	15	3 [1]	[0] 4	sohB	predicted inner membrane peptidase
*	*	÷	W3110S.gb	1332163	1332177	15	9 [1]	[0] 4	yciN	hypothetical protein
*	*	÷	W3110S.gb	1333283	1333293	11	6 [0]	[0] 3	topA	DNA topoisomerase I, omega subunit
*	*	÷	W3110S.gb	1333364	1333368	5	2 [0]	[0] 3	topA	DNA topoisomerase I, omega subunit
*	*	÷	W3110S.gb	1337654	1337662	9	2 [1]	[0] 6	acnA	aconitate hydratase 1
*	*	÷	W3110S.gb	1338229	1338276	48	4 [0]	[1] 4	acnA	aconitate hydratase 1
*	*	÷	W3110S.gb	1338932	1338935	4	4 [0]	[1] 13	acnA	aconitate hydratase 1
*	*	÷	W3110S.gb	1345211	1345224	14	2 [0]	[1] 3	osmB/yciT	lipoprotein/predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	1348265	1348278	14	4 [0]	[0] 6	gmr	modulator of Rnase II stability
*	*	÷	W3110S.gb	1348697	1348730	34	2 [1]	[0] 6	rnb	ribonuclease II
*	*	÷	W3110S.gb	1351107	1351120	14	3 [0]	[0] 2	yciW	predicted oxidoreductase
*	*	÷	W3110S.gb	1352022	1352037	16	6 [0]	[0] 12	fabI	enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent
*	*	÷	W3110S.gb	1355126	1355144	19	5 [1]	[1] 8	sapD	predicted antimicrobial peptide transporter subunit
*	*	÷	W3110S.gb	1358098	1358158	61	3 [0]	[1] 2	sapA	predicted antimicrobial peptide transporter subunit
*	*	÷	W3110S.gb	1359287	1359290	4	2 [0]	[0] 5	ymjA	hypothetical protein
*	*	÷	W3110S.gb	1359938	1359947	10	5 [1]	[0] 2	puuP	putrescine importer
*	*	÷	W3110S.gb	1360076	1360085	10	6 [0]	[1] 2	puuP	putrescine importer
*	*	÷	W3110S.gb	1360713	1360729	17	4 [1]	[0] 2	puuP	putrescine importer
*	*	÷	W3110S.gb	1361575	1361652	78	7 [0]	[0] 2	puuA	gamma‑Glu‑putrescine synthase
*	*	÷	W3110S.gb	1361780	1361783	4	2 [0]	[0] 5	puuA	gamma‑Glu‑putrescine synthase
*	*	÷	W3110S.gb	1363714	1363716	3	5 [0]	[0] 5	puuR	DNA‑binding transcriptional repressor
*	*	÷	W3110S.gb	1365079	1365091	13	2 [0]	[0] 3	puuC	gamma‑Glu‑gamma‑aminobutyraldehyde dehydrogenase, NAD(P)H‑dependent
*	*	÷	W3110S.gb	1366983	1367004	22	4 [1]	[0] 4	puuB	gamma‑Glu‑putrescine oxidase, FAD/NAD(P)‑binding
*	*	÷	W3110S.gb	1367548	1367604	57	6 [1]	[1] 2	puuE	GABA aminotransferase, PLP‑dependent
*	*	÷	W3110S.gb	1368094	1368139	46	4 [1]	[0] 2	puuE	GABA aminotransferase, PLP‑dependent
*	*	÷	W3110S.gb	1368613	1368613	1	3 [0]	[0] 5	puuE/pspF	GABA aminotransferase, PLP‑dependent/DNA‑binding transcriptional activator
*	*	÷	W3110S.gb	1369093	1369094	2	4 [0]	[0] 3	pspF	DNA‑binding transcriptional activator
*	*	÷	W3110S.gb	1370001	1370004	4	5 [0]	[1] 2	pspA	regulatory protein for phage‑shock‑protein operon
*	*	÷	W3110S.gb	1371050	1371051	2	16 [0]	[0] 3	pspC	transcriptional activator
*	*	÷	W3110S.gb	1371185	1371260	76	2 [1]	[1] 6	pspD	peripheral inner membrane phage‑shock protein
*	*	÷	W3110S.gb	1372988	1372991	4	3 [0]	[0] 12	ycjM	predicted glucosyltransferase
*	*	÷	W3110S.gb	1376229	1376232	4	2 [0]	[0] 6	ycjP	predicted sugar transporter subunit
*	*	÷	W3110S.gb	1376687	1376726	40	5 [0]	[1] 6	ycjQ	predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
*	*	÷	W3110S.gb	1378354	1378357	4	4 [0]	[0] 2	ycjR	hypothetical protein
*	*	÷	W3110S.gb	1380505	1380510	6	5 [0]	[0] 2	ycjT	predicted hydrolase
*	*	÷	W3110S.gb	1386953	1386961	9	2 [0]	[0] 3	ycjX	conserved hypothetical protein with nucleoside triphosphate hydrolase domain
*	*	÷	W3110S.gb	1391134	1391147	14	7 [0]	[1] 2	ycjG	L‑Ala‑D/L‑Glu epimerase
*	*	÷	W3110S.gb	1392264	1392321	58	6 [1]	[0] 7	mpaA	murein peptide amidase A
*	*	÷	W3110S.gb	1397684	1397684	1	8 [0]	[0] 4	ynaI/insH	conserved inner membrane protein/IS5 transposase and trans‑activator
*	*	÷	W3110S.gb	1401257	1401294	38	2 [0]	[1] 3	fnr/ogt	DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase
*	*	÷	W3110S.gb	1405226	1405265	40	8 [1]	[0] 2	abgA	predicted peptidase, aminobenzoyl‑glutamate utilization protein
*	*	÷	W3110S.gb	1406109	1406203	95	2 [1]	[0] 2	abgA	predicted peptidase, aminobenzoyl‑glutamate utilization protein
*	*	÷	W3110S.gb	1407902	1407927	26	4 [0]	[0] 6	ydaL	conserved hypothetical protein
*	*	÷	W3110S.gb	1408158	1408164	7	2 [0]	[0] 3	ydaL	conserved hypothetical protein
*	*	÷	W3110S.gb	1408413	1408438	26	2 [1]	[0] 9	ydaM	predicted diguanylate cyclase, GGDEF domain signalling protein
*	*	÷	W3110S.gb	1409175	1409193	19	6 [1]	[0] 2	ydaM	predicted diguanylate cyclase, GGDEF domain signalling protein
*	*	÷	W3110S.gb	1409361	1409371	11	8 [0]	[1] 6	ydaM	predicted diguanylate cyclase, GGDEF domain signalling protein
*	*	÷	W3110S.gb	1412147	1412161	15	4 [1]	[0] 5	dbpA	ATP‑dependent RNA helicase specific for 23S rRNA
*	*	÷	W3110S.gb	1414391	1414441	51	19 [1]	[0] 2	intR	integrase
*	*	÷	W3110S.gb	1421297	1421325	29	3 [0]	[0] 2	ydaG/racR	hypothetical protein/predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	1427644	1427669	26	4 [0]	[1] 6	ydaY	hypothetical protein
*	*	÷	W3110S.gb	1430690	1430690	1	2 [0]	[0] 2	lomR lomR	ECK1366:JW5884+JW5904:b4570; Rac prophage region; hypothetical protein ECK1366:JW5904:b1371; Rac prophage region; hypothetical protein, C‑ter fragment
*	*	÷	W3110S.gb	1431680	1431788	109	8 [0]	[0] 5	stfR	predicted tail fiber protein
*	*	÷	W3110S.gb	1432721	1432728	8	5 [0]	[1] 2	stfR	predicted tail fiber protein
*	*	÷	W3110S.gb	1438037	1438063	27	2 [1]	[0] 4	ompN	outer membrane pore protein N, non‑specific
*	*	÷	W3110S.gb	1440446	1440465	20	7 [0]	[0] 4	ydbK	fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase
*	*	÷	W3110S.gb	1442057	1442078	22	4 [0]	[0] 6	ydbK	fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase
*	*	÷	W3110S.gb	1444363	1444382	20	2 [0]	[1] 9	ldhA	fermentative D‑lactate dehydrogenase, NAD‑dependent
*	*	÷	W3110S.gb	1446273	1446290	18	9 [1]	[0] 7	ydbH	hypothetical protein
*	*	÷	W3110S.gb	1452656	1452661	6	5 [0]	[0] 2	tynA	tyramine oxidase, copper‑requiring
*	*	÷	W3110S.gb	1454123	1454148	26	5 [0]	[0] 6	maoC	fused aldehyde dehydrogenase and enoyl‑CoA hydratase
*	*	÷	W3110S.gb	1456898	1456910	13	10 [0]	[0] 4	paaC	predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
*	*	÷	W3110S.gb	1461224	1461238	15	2 [1]	[0] 2	paaH	3‑hydroxybutyryl‑CoA dehydrogenase
*	*	÷	W3110S.gb	1462834	1462858	25	5 [0]	[1] 6	paaJ	predicted beta‑ketoadipyl CoA thiolase
*	*	÷	W3110S.gb	1465817	1465864	48	3 [1]	[1] 3	paaX	DNA‑binding transcriptional regulator, aryl‑CoA responsive
*	*	÷	W3110S.gb	1468435	1468501–1468447	13–67	2 [0]	[0] 2	ydbA ydbA	ECK1398:JW5802:b1401; predicted outer membrane protein, N‑ter fragment ECK1398:JW5802+JW1402:b4492; predicted outer membrane protein
*	*	÷	W3110S.gb	1476421	1476440	20	4 [0]	[0] 9	ydbC	predicted oxidoreductase, NAD(P)‑binding
*	*	÷	W3110S.gb	1480311	1480318	8	6 [0]	[0] 2	ynbB	predicted CDP‑diglyceride synthase
*	*	÷	W3110S.gb	1487558	1487559	2	3 [0]	[0] 10	hrpA	ATP‑dependent helicase
*	*	÷	W3110S.gb	1489685	1489709	25	2 [0]	[1] 3	ydcF	conserved hypothetical protein
*	*	÷	W3110S.gb	1501914	1501926	13	3 [1]	[0] 2	ydcK	hypothetical protein
*	*	÷	W3110S.gb	1502747	1502749	3	4 [0]	[1] 2	tehA	potassium‑tellurite ethidium and proflavin transporter
*	*	÷	W3110S.gb	1503374	1503408	35	5 [1]	[0] 3	tehB	predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase
*	*	÷	W3110S.gb	1506751	1506756	6	5 [0]	[0] 3	ydcO	predicted benzoate transporter
*	*	÷	W3110S.gb	1507711	1507763	53	5 [1]	[0] 6	ydcO	predicted benzoate transporter
*	*	÷	W3110S.gb	1512954	1512987	34	3 [0]	[1] 9	ydcR	fused predicted DNA‑binding transcriptional regulator and predicted amino transferase
*	*	÷	W3110S.gb	1513292	1513301	10	3 [0]	[1] 2	ydcR/ydcS	fused predicted DNA‑binding transcriptional regulator and predicted amino transferase/predicted spermidine/putrescine transporter subunit
*	*	÷	W3110S.gb	1513887	1513914	28	2 [0]	[0] 2	ydcS	predicted spermidine/putrescine transporter subunit
*	*	÷	W3110S.gb	1516916	1516919	4	4 [0]	[0] 3	ydcV	predicted spermidine/putrescine transporter subunit
*	*	÷	W3110S.gb	1527586	1527599	14	4 [1]	[0] 10	ansP	L‑asparagine transporter
*	*	÷	W3110S.gb	1529852	1529855	4	3 [0]	[0] 3	rhsE	rhsE element core protein RshE
*	*	÷	W3110S.gb	1543610	1543650	41	2 [0]	[1] 8	narZ	nitrate reductase 2 (NRZ), alpha subunit
*	*	÷	W3110S.gb	1549669	1549737–1549702	34–69	5 [1]	[1] 3	fdnG	formate dehydrogenase‑N, alpha subunit, nitrate‑inducible
*	*	÷	W3110S.gb	1553222	1553237	16	2 [0]	[0] 22	fdnI	formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible
*	*	÷	W3110S.gb	1562616	1562636	21	3 [1]	[0] 9	ddpB	D‑Ala‑D‑Ala transporter subunit
*	*	÷	W3110S.gb	1569187	1569212	26	3 [0]	[0] 2	yddV/yddW	predicted diguanylate cyclase/predicted liprotein
*	*	÷	W3110S.gb	1576809	1576859	51	4 [0]	[1] 2	pqqL	predicted peptidase
*	*	÷	W3110S.gb	1580009	1580012	4	3 [0]	[0] 6	yddA	fused predicted multidrug transporter subunits and membrane component and ATP‑binding component of ABC superfamily
*	*	÷	W3110S.gb	1580104	1580127	24	12 [0]	[0] 4	yddA	fused predicted multidrug transporter subunits and membrane component and ATP‑binding component of ABC superfamily
*	*	÷	W3110S.gb	1582631	1582664	34	4 [1]	[1] 2	ydeN	conserved hypothetical protein
*	*	÷	W3110S.gb	1588818	1588835	18	3 [1]	[0] 5	ydeQ	predicted fimbrial‑like adhesin protein
*	*	÷	W3110S.gb	1599016	1599028	13	4 [0]	[0] 3	ydeK	predicted lipoprotein
*	*	÷	W3110S.gb	1600212	1600241	30	9 [0]	[1] 4	ydeK/ydeV	predicted lipoprotein/predicted sugar kinase
*	*	÷	W3110S.gb	1600353	1600353	1	4 [0]	[0] 7	ydeV	predicted sugar kinase
*	*	÷	W3110S.gb	1608189	1608220	32	2 [1]	[0] 5	lsrF	predicted aldolase
*	*	÷	W3110S.gb	1609081	1609130	50	2 [0]	[1] 8	tam	trans‑aconitate methyltransferase
*	*	÷	W3110S.gb	1612767	1612771	5	2 [0]	[0] 3	yneF	predicted diguanylate cyclase
*	*	÷	W3110S.gb	1615182	1615203	22	2 [0]	[1] 4	yneI	predicted aldehyde dehydrogenase
*	*	÷	W3110S.gb	1615386	1615437	52	4 [1]	[1] 2	yneI	predicted aldehyde dehydrogenase
*	*	÷	W3110S.gb	1625129	1625135	7	3 [0]	[1] 2	ydeH	conserved hypothetical protein
*	*	÷	W3110S.gb	1633892	1633893	2	2 [0]	[0] 3	ydfJ	predicted transporter
*	*	÷	W3110S.gb	1635646–1635745	1635763	19–118	3 [0]	[1] 5	pinQ	predicted site‑specific recombinase
*	*	÷	W3110S.gb	1640125	1640136	12	2 [0]	[0] 2	ynfN/cspI	hypothetical protein/cold shock protein
*	*	÷	W3110S.gb	1643455	1643481	27	2 [0]	[0] 6	cspB/cspF	cold shock protein/cold shock protein
*	*	÷	W3110S.gb	1643628	1643628	1	8 [0]	[0] 4	cspF	cold shock protein
*	*	÷	W3110S.gb	1665187	1665190	4	2 [0]	[0] 8	ynfG	oxidoreductase, Fe‑S subunit
*	*	÷	W3110S.gb	1670002	1670012	11	3 [0]	[0] 2	dgsA	DNA‑binding transcriptional repressor
*	*	÷	W3110S.gb	1671249	1671273	25	3 [0]	[1] 10	ynfL	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	1676377	1676390	14	3 [1]	[0] 2	ydgG	predicted inner membrane protein
*	*	÷	W3110S.gb	1680924	1680935	12	14 [1]	[0] 4	ydgH	hypothetical protein
*	*	÷	W3110S.gb	1700529	1700537	9	3 [0]	[1] 5	malI	DNA‑binding transcriptional repressor
*	*	÷	W3110S.gb	1700759	1700813	55	4 [1]	[0] 12	malI	DNA‑binding transcriptional repressor
*	*	÷	W3110S.gb	1701353	1701364	12	6 [1]	[0] 9	malX	fused maltose and glucose‑specific PTS enzyme IIBC components
*	*	÷	W3110S.gb	1704965	1704965	1	3 [0]	[0] 4	add/ydgJ	adenosine deaminase/predicted oxidoreductase
*	*	÷	W3110S.gb	1707694	1707704	11	5 [0]	[0] 6	rsxA	predicted inner membrane subunit
*	*	÷	W3110S.gb	1707812	1707850	39	5 [1]	[0] 3	rsxA	predicted inner membrane subunit
*	*	÷	W3110S.gb	1712616	1712633	18	2 [0]	[1] 3	rsxE	predicted inner membrane NADH‑quinone reductase
*	*	÷	W3110S.gb	1723115	1723136	22	6 [0]	[0] 6	ydhJ	undecaprenyl pyrophosphate phosphatase
*	*	÷	W3110S.gb	1729764	1729805	42	6 [1]	[0] 3	gloA	glyoxalase I, Ni‑dependent
*	*	÷	W3110S.gb	1733145	1733192	48	6 [0]	[1] 3	lhr	predicted ATP‑dependent helicase
*	*	÷	W3110S.gb	1734585	1734588	4	8 [0]	[0] 4	lhr	predicted ATP‑dependent helicase
*	*	÷	W3110S.gb	1735457	1735457	1	7 [0]	[0] 4	lhr/ydhD	predicted ATP‑dependent helicase/conserved hypothetical protein
*	*	÷	W3110S.gb	1738050	1738081	32	2 [0]	[1] 5	ydhP	predicted transporter
*	*	÷	W3110S.gb	1744287	1744309	23	3 [0]	[1] 7	cfa/ribC	cyclopropane fatty acyl phospholipid synthase/riboflavin synthase, alpha subunit
*	*	÷	W3110S.gb	1748687	1748735	49	7 [0]	[0] 4	[ydhR]	[ydhR]
*	*	÷	W3110S.gb	1750874	1750896	23	4 [0]	[1] 7	ydhT	conserved hypothetical protein
*	*	÷	W3110S.gb	1754119	1754128	10	2 [1]	[0] 7	ydhV	predicted oxidoreductase
*	*	÷	W3110S.gb	1755017	1755028	12	3 [0]	[0] 2	ydhV	predicted oxidoreductase
*	*	÷	W3110S.gb	1770019	1770094	76	15 [1]	[1] 5	ydiJ	predicted FAD‑linked oxidoreductase
*	*	÷	W3110S.gb	1771222	1771225	4	2 [0]	[1] 4	ydiK	predicted inner membrane protein
*	*	÷	W3110S.gb	1771388	1771393	6	4 [0]	[1] 5	ydiK	predicted inner membrane protein
*	*	÷	W3110S.gb	1786506	1786509	4	2 [0]	[1] 2	pps	phosphoenolpyruvate synthase
*	*	÷	W3110S.gb	1787321	1787328	8	4 [0]	[0] 3	pps	phosphoenolpyruvate synthase
*	*	÷	W3110S.gb	1792704	1792704	1	4 [0]	[0] 3	ydiU	conserved hypothetical protein
*	*	÷	W3110S.gb	1795112	1795118	7	6 [0]	[0] 4	btuD	vitamin B12 transporter subunit
*	*	÷	W3110S.gb	1797305	1797312	8	7 [0]	[0] 6	pheT	phenylalanine tRNA synthetase, beta subunit
*	*	÷	W3110S.gb	1800379	1800405	27	4 [0]	[0] 4	pheS	phenylalanine tRNA synthetase, alpha subunit
*	*	÷	W3110S.gb	1803611	1803620	10	5 [0]	[0] 3	thrS	threonyl‑tRNA synthetase
*	*	÷	W3110S.gb	1810150	1810158	9	6 [0]	[0] 3	yniA	predicted phosphotransferase/kinase
*	*	÷	W3110S.gb	1813574	1813596	23	2 [0]	[0] 8	ydjN	predicted transporter
*	*	÷	W3110S.gb	1817864	1817911–1817893	30–48	5 [1]	[1] 5	katE/chbG	hydroperoxidase HPII(III)/conserved hypothetical protein
*	*	÷	W3110S.gb	1824074	1824085	12	3 [1]	[0] 6	osmE/nadE	DNA‑binding transcriptional regulator/NAD synthetase, NH3/glutamine‑dependent
*	*	÷	W3110S.gb	1825616	1825638	23	5 [0]	[0] 2	ydjQ	endonuclease of nucleotide excision repair
*	*	÷	W3110S.gb	1827265	1827296	32	2 [0]	[1] 6	spy	envelope stress induced periplasmic protein
*	*	÷	W3110S.gb	1828078	1828143	66	3 [1]	[0] 7	astE	succinylglutamate desuccinylase
*	*	÷	W3110S.gb	1828698	1828718	21	7 [0]	[0] 7	astB	succinylarginine dihydrolase
*	*	÷	W3110S.gb	1834417	1834448	32	5 [0]	[1] 8	xthA	exonuclease III
*	*	÷	W3110S.gb	1836786	1836797	12	4 [0]	[1] 2	ydjZ	conserved inner membrane protein
*	*	÷	W3110S.gb	1837058	1837088	31	3 [0]	[1] 4	ydjZ	conserved inner membrane protein
*	*	÷	W3110S.gb	1837525	1837532	8	3 [1]	[0] 3	ynjA	conserved hypothetical protein
*	*	÷	W3110S.gb	1838219	1838250	32	4 [0]	[0] 4	ynjB	conserved hypothetical protein
*	*	÷	W3110S.gb	1840280	1840327	48	4 [0]	[0] 3	ynjC	fused transporter subunits and membrane component of ABC superfamily
*	*	÷	W3110S.gb	1842375	1842376	2	7 [0]	[0] 2	ynjE	predicted thiosulfate sulfur transferase
*	*	÷	W3110S.gb	1842457	1842457	1	4 [0]	[0] 3	ynjE	predicted thiosulfate sulfur transferase
*	*	÷	W3110S.gb	1842827	1842852	26	3 [0]	[0] 4	ynjF	predicted phosphatidyl transferase, inner membrane protein
*	*	÷	W3110S.gb	1847622	1847654	33	2 [0]	[0] 3	topB	DNA topoisomerase III
*	*	÷	W3110S.gb	1848116	1848119	4	4 [0]	[0] 6	topB	DNA topoisomerase III
*	*	÷	W3110S.gb	1849888	1849912	25	23 [1]	[0] 4	ydjA	predicted oxidoreductase
*	*	÷	W3110S.gb	1857882	1857928	47	6 [1]	[1] 3	ydjH	predicted kinase
*	*	÷	W3110S.gb	1859043	1859043	1	3 [0]	[0] 3	ydjI	predicted aldolase
*	*	÷	W3110S.gb	1870216	1870216	1	5 [0]	[0] 3	yeaG	conserved hypothetical protein with nucleoside triphosphate hydrolase domain
*	*	÷	W3110S.gb	1882387	1882395	9	3 [1]	[0] 9	yeaS	neutral amino‑acid efflux system
*	*	÷	W3110S.gb	1883229	1883239	11	3 [0]	[0] 4	yeaT	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	1886287	1886295	9	2 [1]	[0] 3	yeaV	predicted transporter
*	*	÷	W3110S.gb	1889294	1889319	26	5 [1]	[0] 4	rnd	ribonuclease D
*	*	÷	W3110S.gb	1891201	1891201	1	7 [0]	[0] 5	fadD	acyl‑CoA synthetase
*	*	÷	W3110S.gb	1894812	1894877	66	2 [1]	[1] 6	yoaA	conserved hypothetical protein with nucleoside triphosphate hydrolase domain
*	*	÷	W3110S.gb	1900013	1900013	1	5 [0]	[0] 5	sdaA/yoaD	L‑serine deaminase I/predicted phosphodiesterase
*	*	÷	W3110S.gb	1904114	1904123	10	5 [0]	[1] 12	manX	fused mannose‑specific PTS enzyme IIAB components
*	*	÷	W3110S.gb	1906533	1906602	70	2 [0]	[1] 9	yobD	conserved inner membrane protein
*	*	÷	W3110S.gb	1916227	1916262	36	3 [0]	[0] 2	prc	carboxy‑terminal protease for penicillin‑binding protein 3
*	*	÷	W3110S.gb	1916560	1916566	7	8 [0]	[0] 9	proQ	predicted structural transport element
*	*	÷	W3110S.gb	1919385	1919436	52	8 [0]	[1] 3	yebT	conserved hypothetical protein
*	*	÷	W3110S.gb	1928946	1929004	59	4 [0]	[0] 2	ptrB	protease II
*	*	÷	W3110S.gb	1932166	1932169	4	4 [1]	[0] 4	yebF/yebG	hypothetical protein/conserved hypothetical protein regulated by LexA
*	*	÷	W3110S.gb	1934518	1934524	7	2 [0]	[0] 8	edd	6‑phosphogluconate dehydratase
*	*	÷	W3110S.gb	1937993	1937999	7	3 [0]	[0] 3	zwf	glucose‑6‑phosphate dehydrogenase
*	*	÷	W3110S.gb	1950066	1950076	11	4 [1]	[0] 4	nudB	dATP pyrophosphohydrolase
*	*	÷	W3110S.gb	1960847	1960871	25	7 [0]	[0] 2	cutC	copper homeostasis protein
*	*	÷	W3110S.gb	1963066	1963069	4	5 [0]	[0] 3	argS	arginyl‑tRNA synthetase
*	*	÷	W3110S.gb	1967958	1967961	4	9 [0]	[0] 3	flhB/cheZ	predicted flagellar export pore protein/chemotaxis regulator
*	*	÷	W3110S.gb	1971509	1971512	4	6 [0]	[0] 2	tap	methyl‑accepting protein IV
*	*	÷	W3110S.gb	1972623	1972623	1	2 [0]	[0] 6	tap	methyl‑accepting protein IV
*	*	÷	W3110S.gb	1983917	1983944	28	9 [0]	[0] 2	otsB	trehalose‑6‑phosphate phosphatase, biosynthetic
*	*	÷	W3110S.gb	1984799	1984846	48	7 [0]	[1] 7	araH	fused L‑arabinose transporter subunits and membrane components of ABC superfamily
*	*	÷	W3110S.gb	1991371	1991381	11	6 [1]	[0] 2	ftn/yecH	cytoplasmic ferritin iron storage protein/hypothetical protein
*	*	÷	W3110S.gb	1992574	1992602	29	6 [0]	[0] 5	tyrP	tyrosine transporter
*	*	÷	W3110S.gb	1994824	1994850	27	5 [0]	[0] 4	pgsA	phosphatidylglycerophosphate synthetase
*	*	÷	W3110S.gb	1998693	1998706	14	2 [1]	[0] 6	sdiA	DNA‑binding transcriptional activator
*	*	÷	W3110S.gb	2000940	2000987	48	2 [1]	[1] 6	yedO	D‑cysteine desulfhydrase, PLP‑dependent
*	*	÷	W3110S.gb	2004008	2004030	23	7 [1]	[1] 4	fliA/fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein
*	*	÷	W3110S.gb	2004102	2004105	4	3 [0]	[0] 2	fliA/fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein
*	*	÷	W3110S.gb	2013787	2013805	19	2 [0]	[0] 2	yedN yedN	ECK1932:JW5912+JW1918:b4495; hypothetical protein ECK1932:JW5912:b1934; hypothetical protein, C‑ter fragment
*	*	÷	W3110S.gb	2015589	2015595	7	2 [0]	[0] 3	fliF	flagellar basal‑body MS‑ring and collar protein
*	*	÷	W3110S.gb	2017998	2018000	3	4 [0]	[0] 8	fliG	flagellar motor switching and energizing component
*	*	÷	W3110S.gb	2018554	2018570	17	9 [0]	[0] 27	fliH	flagellar biosynthesis protein
*	*	÷	W3110S.gb	2035466	2035501	36	2 [0]	[0] 6	yedR	predicted inner membrane protein
*	*	÷	W3110S.gb	2041775	2041834	60	10 [0]	[1] 3	yedY	predicted reductase
*	*	÷	W3110S.gb	2061132	2061169	38	2 [1]	[0] 5	yeeO	predicted multidrug efflux system
*	*	÷	W3110S.gb	2070552	2070555	4	6 [0]	[0] 5	insH/yoeA	IS5 transposase and trans‑activator/CP4‑44 prophage region; ECK1989:JW5326:b1995; predicted disrupted hemin or colicin receptor
*	*	÷	W3110S.gb	2095763	2095773	11	3 [0]	[0] 7	hisB	fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase
*	*	÷	W3110S.gb	2096400	2096446	47	3 [1]	[0] 12	hisB	fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase
*	*	÷	W3110S.gb	2097367	2097370	4	4 [0]	[0] 3	hisA	N‑(5'‑phospho‑L‑ribosyl‑formimino)‑5‑amino‑1‑ (5'‑phosphoribosyl)‑4‑imidazolecarboxamide isomerase
*	*	÷	W3110S.gb	2099479	2099505	27	4 [1]	[0] 4	cld	regulator of length of O‑antigen component of lipopolysaccharide chains
*	*	÷	W3110S.gb	2117967	2118012	46	2 [0]	[0] 3	wcaM	predicted colanic acid biosynthesis protein
*	*	÷	W3110S.gb	2120702	2120705	4	7 [0]	[0] 2	wcaK/wzxC	predicted pyruvyl transferase/colanic acid exporter
*	*	÷	W3110S.gb	2121555	2121556	2	8 [0]	[0] 4	wzxC	colanic acid exporter
*	*	÷	W3110S.gb	2121639	2121656	18	11 [0]	[0] 7	wzxC	colanic acid exporter
*	*	÷	W3110S.gb	2123956	2123965	10	4 [0]	[0] 4	cpsG	phosphomannomutase
*	*	÷	W3110S.gb	2127089	2127094	6	5 [1]	[0] 4	wcaI	predicted glycosyl transferase
*	*	÷	W3110S.gb	2129784	2129831	48	8 [0]	[0] 7	gmd	GDP‑D‑mannose dehydratase, NAD(P)‑binding
*	*	÷	W3110S.gb	2141110	2141117	8	10 [0]	[0] 2	yegH	fused predicted membrane proteins
*	*	÷	W3110S.gb	2152581	2152593	13	6 [0]	[0] 3	yegI	conserved hypothetical protein
*	*	÷	W3110S.gb	2153933	2153933	1	3 [0]	[0] 2	yegK	hypothetical protein
*	*	÷	W3110S.gb	2161364	2161365	2	5 [0]	[0] 12	mdtC	multidrug efflux system, subunit C
*	*	÷	W3110S.gb	2163442	2163444	3	3 [0]	[0] 5	mdtC	multidrug efflux system, subunit C
*	*	÷	W3110S.gb	2166164	2166189	26	2 [1]	[0] 3	baeS	sensory histidine kinase in two‑component regulatory system with BaeR
*	*	÷	W3110S.gb	2167710	2167732	23	5 [0]	[1] 4	yegP/yegQ	hypothetical protein/predicted peptidase
*	*	÷	W3110S.gb	2185271	2185308	38	6 [1]	[0] 5	yegV	predicted kinase
*	*	÷	W3110S.gb	2198871	2198877	7	4 [0]	[0] 3	metG	methionyl‑tRNA synthetase
*	*	÷	W3110S.gb	2203255	2203258	4	7 [0]	[0] 4	molR molR	DNA‑binding transcriptional regulator; ECK2108:JW2102+JW5915+JW5916:b4499 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2108:JW5916:b2117
*	*	÷	W3110S.gb	2221727	2221746	20	2 [0]	[0] 7	yehY	predicted transporter subunit
*	*	÷	W3110S.gb	2225824	2225845	22	10 [0]	[0] 8	dld	D‑lactate dehydrogenase, FAD‑binding, NADH independent
*	*	÷	W3110S.gb	2232475	2232628–2232598	124–154	7 [0]	[0] 2	yohH/dusC	conserved hypothetical protein/tRNA‑dihydrouridine synthase C
*	*	÷	W3110S.gb	2236030	2236069	40	2 [1]	[1] 5	[cdd]	[cdd]
*	*	÷	W3110S.gb	2237469	2237474	6	7 [0]	[1] 2	yeiT	predicted oxidoreductase
*	*	÷	W3110S.gb	2258612	2258615	4	3 [0]	[0] 4	rihB/yeiL	ribonucleoside hydrolase 2/DNA‑binding transcriptional activator
*	*	÷	W3110S.gb	2267487	2267513	27	2 [1]	[1] 2	setB	lactose/glucose efflux system
*	*	÷	W3110S.gb	2276617	2276628	12	7 [0]	[0] 5	yejA	predicted oligopeptide transporter subunit
*	*	÷	W3110S.gb	2277696	2277709	14	2 [1]	[0] 3	yejB	predicted oligopeptide transporter subunit
*	*	÷	W3110S.gb	2284896	2284937	42	2 [1]	[0] 5	yejH	predicted ATP‑dependet helicase
*	*	÷	W3110S.gb	2288743	2288779	37	13 [0]	[0] 8	yejM	predicted hydrolase, inner membrane
*	*	÷	W3110S.gb	2296373	2296426	54	3 [0]	[0] 18	ccmF	heme lyase, CcmF subunit
*	*	÷	W3110S.gb	2299870	2299871	2	8 [0]	[0] 5	ccmB	heme exporter subunit
*	*	÷	W3110S.gb	2302102	2302103	2	2 [0]	[0] 2	napH	ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)
*	*	÷	W3110S.gb	2302539	2302556	18	7 [0]	[0] 5	napH	ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)
*	*	÷	W3110S.gb	2306537	2306570	34	3 [1]	[0] 2	napF	ferredoxin‑type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA)
*	*	÷	W3110S.gb	2311069	2311078	10	3 [1]	[0] 2	yojI	fused predicted multidrug transport subunits and membrane component and ATP‑binding component of ABC superfamily
*	*	÷	W3110S.gb	2314710	2314713	4	9 [0]	[0] 3	yojL	predicted thiamine biosynthesis lipoprotein
*	*	÷	W3110S.gb	2332410	2332413	4	2 [0]	[0] 3	yfaP	conserved hypothetical protein
*	*	÷	W3110S.gb	2351502	2351514	13	10 [0]	[0] 2	nrdA	ribonucleoside diphosphate reductase 1, alpha subunit
*	*	÷	W3110S.gb	2352004	2352021	18	3 [1]	[0] 2	nrdA/nrdB	ribonucleoside diphosphate reductase 1, alpha subunit/ribonucleoside diphosphate reductase 1, beta subunit, ferritin‑like
*	*	÷	W3110S.gb	2362909	2362917	9	14 [0]	[0] 3	yfaU	predicted 2,4‑dihydroxyhept‑2‑ene‑1,7‑dioic acid aldolase
*	*	÷	W3110S.gb	2380840	2380874	35	3 [1]	[0] 4	menB	dihydroxynaphthoic acid synthetase
*	*	÷	W3110S.gb	2381915	2381970	56	6 [1]	[0] 7	yfbB	predicted peptidase
*	*	÷	W3110S.gb	2390188	2390199	12	6 [0]	[0] 6	yfbK	conserved hypothetical protein
*	*	÷	W3110S.gb	2405200	2405212	13	6 [0]	[0] 6	nuoF	NADH:ubiquinone oxidoreductase, chain F
*	*	÷	W3110S.gb	2406048	2406071	24	2 [1]	[0] 10	nuoF	NADH:ubiquinone oxidoreductase, chain F
*	*	÷	W3110S.gb	2414915	2414937	23	2 [0]	[1] 4	yfbR/yfbS	deoxyribonucleoside 5'‑monophosphatase/predicted transporter
*	*	÷	W3110S.gb	2421026	2421026	1	3 [0]	[0] 5	pta	phosphate acetyltransferase
*	*	÷	W3110S.gb	2436442	2436464	23	2 [0]	[0] 5	cvpA/dedD	membrane protein required for colicin V production/conserved hypothetical protein
*	*	÷	W3110S.gb	2441834	2441851	18	3 [1]	[0] 2	usg	predicted semialdehyde dehydrogenase
*	*	÷	W3110S.gb	2444516	2444578	63	2 [1]	[0] 2	yfcJ	predicted transporter
*	*	÷	W3110S.gb	2462575	2462575	1	2 [0]	[0] 6	yfcX	fused enoyl‑CoA hydratase, 3‑hydroxybutyryl‑CoA epimerase, dodecenoyl‑CoA D‑isomerase, and 3‑hydroxyacyl‑CoA dehydrogenase, subunit of anaerobic fatty acid oxidation complex
*	*	÷	W3110S.gb	2465572	2465609	38	3 [1]	[0] 7	yfcY	beta‑ketoacyl‑CoA thiolase, anaerobic, subunit
*	*	÷	W3110S.gb	2466783	2466808	26	3 [1]	[0] 3	fadL	long‑chain fatty acid outer membrane transporter
*	*	÷	W3110S.gb	2473545	2473561	17	15 [1]	[1] 2	yfdG	bactoprenol‑linked glucose translocase (flippase)
*	*	÷	W3110S.gb	2493503	2493512	10	2 [0]	[1] 2	yfdE	predicted CoA‑transferase, NAD(P)‑binding
*	*	÷	W3110S.gb	2510368	2510376	9	6 [1]	[1] 3	ypdE	predicted peptidase
*	*	÷	W3110S.gb	2511072	2511082	11	4 [0]	[0] 4	ypdF	predicted peptidase
*	*	÷	W3110S.gb	2511524	2511530	7	3 [0]	[0] 4	ypdF	predicted peptidase
*	*	÷	W3110S.gb	2514221	2514222	2	6 [0]	[0] 2	glk	glucokinase
*	*	÷	W3110S.gb	2517232	2517250	19	4 [0]	[1] 2	mntH	manganese/divalent cation transporter
*	*	÷	W3110S.gb	2534072	2534082	11	3 [0]	[1] 2	ligA	DNA ligase, NAD(+)‑dependent
*	*	÷	W3110S.gb	2536331	2536344	14	8 [0]	[0] 2	zipA	cell division protein involved in Z ring assembly
*	*	÷	W3110S.gb	2545749	2545749	1	3 [0]	[0] 3	cysA	sulfate/thiosulfate transporter subunit
*	*	÷	W3110S.gb	2552107	2552128	22	4 [0]	[0] 12	[yfeU]–[murP]	[yfeU],[murP]
*	*	÷	W3110S.gb	2553369	2553378	10	4 [0]	[0] 2	murP	fused predicted enzyme IIBC components of PTS
*	*	÷	W3110S.gb	2558866	2558880	15	3 [1]	[0] 4	hemF	coproporphyrinogen III oxidase
*	*	÷	W3110S.gb	2569096	2569148	53	8 [1]	[0] 7	eutE	predicted aldehyde dehydrogenase, ethanolamine utilization protein
*	*	÷	W3110S.gb	2571647	2571655	9	2 [0]	[0] 3	eutI	predicted phosphotransacetylase subunit
*	*	÷	W3110S.gb	2579394	2579424	31	2 [0]	[0] 2	tktB	transketolase 2, thiamin‑binding
*	*	÷	W3110S.gb	2585540	2585543	4	11 [0]	[0] 4	narQ	sensory histidine kinase in two‑component regulatory system with NarP (NarL)
*	*	÷	W3110S.gb	2585836	2585844	9	3 [0]	[0] 10	narQ	sensory histidine kinase in two‑component regulatory system with NarP (NarL)
*	*	÷	W3110S.gb	2587615	2587645	31	12 [0]	[0] 5	acrD	aminoglycoside/multidrug efflux system
*	*	÷	W3110S.gb	2599278	2599304	27	2 [0]	[0] 3	bcp	thiol peroxidase, thioredoxin‑dependent
*	*	÷	W3110S.gb	2602907	2602910	4	4 [0]	[0] 9	hyfC	hydrogenase 4, membrane subunit
*	*	÷	W3110S.gb	2606637	2606653	17	3 [0]	[1] 10	hyfF	hydrogenase 4, membrane subunit
*	*	÷	W3110S.gb	2609032	2609047	16	8 [0]	[0] 2	hyfH	hydrogenase 4, Fe‑S subunit
*	*	÷	W3110S.gb	2619500	2619501	2	7 [0]	[0] 9	upp	uracil phosphoribosyltransferase
*	*	÷	W3110S.gb	2629322	2629383	62	3 [1]	[0] 8	yfgI	conserved hypothetical protein
*	*	÷	W3110S.gb	2635369	2635395	27	2 [1]	[0] 3	der	predicted GTP‑binding protein
*	*	÷	W3110S.gb	2641116	2641157	42	2 [1]	[0] 4	yfgA	conserved hypothetical protein
*	*	÷	W3110S.gb	2645316	2645325	10	2 [0]	[0] 2	pbpC	fused transglycosylase and transpeptidase
*	*	÷	W3110S.gb	2652589	2652606	18	2 [0]	[0] 7	sseA/sseB	3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate
*	*	÷	W3110S.gb	2653636	2653653	18	3 [0]	[0] 4	sseB/pepB	rhodanase‑like enzyme, sulfur transfer from thiosulfate/aminopeptidase B
*	*	÷	W3110S.gb	2682663	2682681	19	3 [1]	[0] 4	yphH	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	2706666	2706682	17	5 [0]	[0] 3	rseB	anti‑sigma factor
*	*	÷	W3110S.gb	2719576	2719589	14	3 [0]	[1] 2	yfiQ	fused predicted acyl‑CoA synthetase NAD(P)‑binding subunit and ATP‑binding subunit
*	*	÷	W3110S.gb	2719922	2719941	20	5 [1]	[0] 3	yfiQ	fused predicted acyl‑CoA synthetase NAD(P)‑binding subunit and ATP‑binding subunit
*	*	÷	W3110S.gb	2720982	2721003	22	6 [0]	[0] 2	yfiQ	fused predicted acyl‑CoA synthetase NAD(P)‑binding subunit and ATP‑binding subunit
*	*	÷	W3110S.gb	2737540	2737563	24	12 [0]	[1] 2	[pheA]	[pheA]
*	*	÷	W3110S.gb	2749281	2749286	6	7 [0]	[0] 2	grpE	heat shock protein
*	*	÷	W3110S.gb	2749535	2749536	2	7 [0]	[0] 2	yfjB	NAD kinase
*	*	÷	W3110S.gb	2777816	2777818	3	9 [0]	[0] 6	ypjA	adhesin‑like autotransporter
*	*	÷	W3110S.gb	2793572	2793575	4	9 [0]	[0] 5	gabP	gamma‑aminobutyrate transporter
*	*	÷	W3110S.gb	2794113	2794130	18	7 [1]	[0] 2	gabP	gamma‑aminobutyrate transporter
*	*	÷	W3110S.gb	2813057	2813062	6	13 [0]	[0] 7	luxS	S‑ribosylhomocysteinase
*	*	÷	W3110S.gb	2827367	2827459	93	3 [0]	[1] 12	gutM	DNA‑binding transcriptional activator
*	*	÷	W3110S.gb	2856323	2856336	14	5 [0]	[0] 5	mutS	methyl‑directed mismatch repair protein
*	*	÷	W3110S.gb	2861128	2861131	4	3 [0]	[0] 5	ygbK	conserved hypothetical protein
*	*	÷	W3110S.gb	2861685	2861687	3	2 [0]	[0] 4	ygbK	conserved hypothetical protein
*	*	÷	W3110S.gb	2862732	2862746	15	2 [0]	[1] 3	ygbL	predicted class II aldolase
*	*	÷	W3110S.gb	2872547	2872570	24	4 [0]	[1] 5	cysC	adenosine 5'‑phosphosulfate kinase
*	*	÷	W3110S.gb	2876512	2876555	44	5 [1]	[1] 2	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/hypothetical protein
*	*	÷	W3110S.gb	2876625	2876649	25	2 [1]	[0] 2	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/hypothetical protein
*	*	÷	W3110S.gb	2876731	2876762	32	2 [0]	[1] 5	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/hypothetical protein
*	*	÷	W3110S.gb	2876933	2876933	1	2 [0]	[0] 4	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/hypothetical protein
*	*	÷	W3110S.gb	2893920	2893930	11	2 [1]	[0] 3	ygcQ	predicted flavoprotein
*	*	÷	W3110S.gb	2902983	2903038	56	2 [0]	[1] 6	ygcE/ygcF	predicted kinase/conserved hypothetical protein
*	*	÷	W3110S.gb	2921980	2921984	5	3 [0]	[0] 8	yqcB	tRNA pseudouridine synthase
*	*	÷	W3110S.gb	2937970	2937981	12	8 [1]	[0] 3	fucU/fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator
*	*	÷	W3110S.gb	2942044	2942061	18	5 [0]	[0] 2	csdA	cysteine sulfinate desulfinase
*	*	÷	W3110S.gb	2946721	2946798	78	3 [1]	[1] 14	amiC	N‑acetylmuramoyl‑L‑alanine amidase
*	*	÷	W3110S.gb	2950091	2950140	50	4 [0]	[0] 3	recD	exonuclease V (RecBCD complex), alpha chain
*	*	÷	W3110S.gb	2951834	2951835	2	9 [0]	[1] 5	recB	exonuclease V (RecBCD complex), beta subunit
*	*	÷	W3110S.gb	2953665	2953666	2	6 [0]	[0] 2	recB	exonuclease V (RecBCD complex), beta subunit
*	*	÷	W3110S.gb	2953740	2953753	14	8 [0]	[1] 2	recB	exonuclease V (RecBCD complex), beta subunit
*	*	÷	W3110S.gb	3014537	3014544	8	2 [0]	[1] 4	ygfJ/ygfK	conserved hypothetical protein/predicted oxidoreductase, Fe‑S subunit
*	*	÷	W3110S.gb	3019490	3019514	25	2 [1]	[1] 4	ygfM	predicted oxidoreductase
*	*	÷	W3110S.gb	3044655	3044743	89	5 [1]	[1] 2	ygfF/gcvP	predicted NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex
*	*	÷	W3110S.gb	3051973	3051984	12	4 [0]	[1] 4	ubiH	2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding
*	*	÷	W3110S.gb	3063021	3063028	8	6 [0]	[0] 3	ygfG	methylmalonyl‑CoA decarboxylase, biotin‑independent
*	*	÷	W3110S.gb	3074138	3074157	20	7 [0]	[1] 15	yggF	predicted hexoseP phosphatase
*	*	÷	W3110S.gb	3074733	3074736	4	4 [0]	[0] 2	yggF	predicted hexoseP phosphatase
*	*	÷	W3110S.gb	3089750	3089757	8	9 [0]	[1] 5	endA/yggJ	DNA‑specific endonuclease I/hypothetical protein
*	*	÷	W3110S.gb	3105804	3105835	32	6 [0]	[1] 11	speC	ornithine decarboxylase, constitutive
*	*	÷	W3110S.gb	3117218	3117232	15	5 [0]	[0] 5	yghJ	predicted inner membrane lipoprotein
*	*	÷	W3110S.gb	3123703	3123712	10	2 [0]	[0] 2	glcF	glycolate oxidase iron‑sulfur subunit
*	*	÷	W3110S.gb	3124807	3124919	113	4 [1]	[1] 5	glcE	glycolate oxidase FAD binding subunit
*	*	÷	W3110S.gb	3135887	3135903	17	2 [0]	[1] 5	gss	fused glutathionylspermidine amidase and glutathionylspermidine synthetase
*	*	÷	W3110S.gb	3157525	3157531	7	4 [0]	[0] 2	yqhH	predicted outer membrane lipoprotein
*	*	÷	W3110S.gb	3163852	3163863	12	6 [1]	[0] 5	parC	DNA topoisomerase IV, subunit A
*	*	÷	W3110S.gb	3244124	3244147	24	5 [1]	[1] 3	exuT	hexuronate transporter
*	*	÷	W3110S.gb	3260282	3260290	9	3 [0]	[0] 2	tdcE	pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase
*	*	÷	W3110S.gb	3292440	3292458	19	2 [1]	[0] 2	yraL	predicted methyltransferase
*	*	÷	W3110S.gb	3294220	3294261	42	5 [0]	[1] 3	yraM	conserved hypothetical protein
*	*	÷	W3110S.gb	3299331	3299341	11	6 [0]	[0] 2	yhbO yhbP	predicted intracellular protease conserved hypothetical protein
*	*	÷	W3110S.gb	3315657	3315657	1	4 [0]	[0] 6	infB	fused protein chain initiation factor 2, IF2
*	*	÷	W3110S.gb	3332572	3332587	16	5 [0]	[0] 5	yhbE	conserved inner membrane protein
*	*	÷	W3110S.gb	3392970	3392987	18	2 [1]	[0] 4	yhdP	conserved membrane protein, predicted transporter
*	*	÷	W3110S.gb	3400164	3400164	1	5 [0]	[0] 8	mreB	cell wall structural complex MreBCD, actin‑like component MreB
*	*	÷	W3110S.gb	3403775	3403786	12	7 [0]	[0] 3	yhdH	predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
*	*	÷	W3110S.gb	3415675	3415703	29	2 [1]	[1] 3	acrF	multidrug efflux system protein
*	*	÷	W3110S.gb	3430957	3430965	9	2 [1]	[0] 3	purD	phosphoribosylglycinamide synthetase phosphoribosylamine‑glycine ligase
*	*	÷	W3110S.gb	3513938	3513978	41	7 [0]	[1] 2	ftsN	essential cell division protein
*	*	÷	W3110S.gb	3530835	3530841	7	3 [0]	[1] 2	cpxP	periplasmic protein combats stress
*	*	÷	W3110S.gb	3566995	3567003	9	4 [0]	[0] 2	yihR	predicted aldose‑1‑epimerase
*	*	÷	W3110S.gb	3618117	3618169	53	2 [0]	[0] 8	rmuC	predicted recombination limiting protein
*	*	÷	W3110S.gb	3681943	3681943	1	2 [0]	[0] 2	ilvD	dihydroxyacid dehydratase
*	*	÷	W3110S.gb	3785401	3785437	37	3 [1]	[1] 3	emrD	multidrug efflux system protein
*	*	÷	W3110S.gb	3799024	3799054	31	3 [0]	[0] 2	yicM	predicted transporter
*	*	÷	W3110S.gb	3824757	3824769	13	3 [0]	[1] 2	pyrE	orotate phosphoribosyltransferase
*	*	÷	W3110S.gb	3826798	3826821	24	6 [0]	[0] 4	dfp	fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase, FMN‑binding
*	*	÷	W3110S.gb	3842813	3842817	5	6 [1]	[0] 3	rfaL	O‑antigen ligase
*	*	÷	W3110S.gb	3859256	3859278	23	5 [1]	[0] 4	yibK/lldD	predicted rRNA methylase/L‑lactate dehydrogenase, FMN‑linked
*	*	÷	W3110S.gb	3864627	3864641	15	3 [1]	[0] 9	mtlR	DNA‑binding transcriptional repressor
*	*	÷	W3110S.gb	3900544	3900560	17	2 [1]	[1] 4	avtA	valine‑pyruvate aminotransferase
*	*	÷	W3110S.gb	3915491	3915518	28	2 [0]	[1] 6	glyQ	glycine tRNA synthetase, alpha subunit
*	*	÷	W3110S.gb	3924479	3924480	2	3 [0]	[0] 6	bisC	biotin sulfoxide reductase
*	*	÷	W3110S.gb	3944463	3944470	8	2 [0]	[0] 4	yhjQ	ECK3519:JW5941:b3534; cell division protein; chromosome partitioning ATPase
*	*	÷	W3110S.gb	3950656	3950677	22	3 [0]	[0] 3	bcsZ	endo‑1,4‑D‑glucanase
*	*	÷	W3110S.gb	4023262	4023303	42	2 [1]	[0] 5	nikD	nickel transporter subunit
*	*	÷	W3110S.gb	4029761	4029831	71	6 [1]	[1] 5	yhhS	predicted transporter
*	*	÷	W3110S.gb	4031685	4031722	38	3 [0]	[0] 3	yhhP/zntA	conserved hypothetical protein required for cell growth/zinc, cobalt and lead efflux system
*	*	÷	W3110S.gb	4083796	4083853	58	6 [1]	[1] 5	rtcA	RNA 3'‑terminal phosphate cyclase
*	*	÷	W3110S.gb	4105859	4105863	5	2 [0]	[0] 5	envZ	sensory histidine kinase in two‑component regulatory system with OmpR
*	*	÷	W3110S.gb	4135547	4135552	6	3 [0]	[1] 2	yhfS/frlR	conserved hypothetical protein/predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	4157943	4157951	9	3 [1]	[0] 3	yheS	fused predicted transporter subunits and ATP‑binding components of ABC superfamily
*	*	÷	W3110S.gb	4160929	4160937	9	2 [0]	[1] 3	kefB	potassium:proton antiporter
*	*	÷	W3110S.gb	4170810	4170812	3	4 [0]	[1] 2	chiA	periplasmic endochitinase
*	*	÷	W3110S.gb	4179692	4179693	2	4 [0]	[0] 9	gspF	general secretory pathway component, cryptic
*	*	÷	W3110S.gb	4190820	4190827	8	4 [0]	[1] 9	rpsC	30S ribosomal subunit protein S3
*	*	÷	W3110S.gb	4213637–4215889	4216717–4215891	3–3081	2 [0]	[0] 4	[rrlE]–[rrfE]	[rrlE],[rrfE]
*	*	÷	W3110S.gb	4295816	4295834	19	5 [1]	[1] 3	nrfE	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
*	*	÷	W3110S.gb	4320314	4320320	7	8 [0]	[0] 4	phnN	ribose 1,5‑bisphosphokinase
*	*	÷	W3110S.gb	4326611	4326661	51	2 [1]	[1] 2	phnF	transcriptional regulator of phosphonate uptake and biodegradation
*	*	÷	W3110S.gb	4328227	4328274	48	4 [0]	[0] 6	phnD	phosphonate/organophosphate ester transporter subunit
*	*	÷	W3110S.gb	4334430	4334440	11	2 [1]	[0] 3	yjcZ	conserved hypothetical protein
*	*	÷	W3110S.gb	4342734	4342759	26	3 [1]	[1] 4	adiY/adiA	DNA‑binding transcriptional activator/biodegradative arginine decarboxylase
*	*	÷	W3110S.gb	4369562	4369569	8	22 [1]	[0] 3	dipZ	fused thiol:disulfide interchange protein
*	*	÷	W3110S.gb	4391046	4391047	2	2 [0]	[0] 6	yjeP	predicted mechanosensitive channel
*	*	÷	W3110S.gb	4401122	4401205	84	7 [0]	[1] 2	amiB	N‑acetylmuramoyl‑l‑alanine amidase II
*	*	÷	W3110S.gb	4403221	4403251	31	2 [0]	[1] 3	mutL	methyl‑directed mismatch repair protein
*	*	÷	W3110S.gb	4403530	4403530	1	2 [0]	[0] 2	mutL	methyl‑directed mismatch repair protein
*	*	÷	W3110S.gb	4444649	4444650	2	7 [0]	[0] 2	ytfL	predicted inner membrane protein
*	*	÷	W3110S.gb	4448044	4448058	15	2 [0]	[0] 11	ytfM	predicted outer membrane protein and surface antigen
*	*	÷	W3110S.gb	4448840	4448850	11	2 [0]	[1] 4	ytfN	conserved hypothetical protein
*	*	÷	W3110S.gb	4507311	4507312	2	2 [0]	[0] 2	insG	IS4 predicted transposase
*	*	÷	W3110S.gb	4522634	4522640	7	2 [0]	[0] 4	fecI	RNA polymerase, sigma 19 factor
*	*	÷	W3110S.gb	4547373	4547375	3	3 [0]	[0] 4	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
*	*	÷	W3110S.gb	4547675	4547675	1	2 [0]	[0] 2	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
*	*	÷	W3110S.gb	4557987	4557993	7	8 [0]	[0] 3	uxuB	D‑mannonate oxidoreductase, NAD‑binding
*	*	÷	W3110S.gb	4565117	4565155	39	5 [0]	[1] 2	yjiH	conserved inner membrane protein
*	*	÷	W3110S.gb	4567696	4567698	3	6 [0]	[0] 2	yjiK	conserved hypothetical protein
*	*	÷	W3110S.gb	4571745	4571808	64	3 [0]	[1] 7	yjiN	conserved inner membrane protein
*	*	÷	W3110S.gb	4579448	4579471	24	4 [1]	[0] 9	yjiV	ECK4334:JW5954:b4486; conserved hypothetical protein
*	*	÷	W3110S.gb	4592709	4592746	38	3 [1]	[0] 3	yjiA	predicted GTPase
*	*	÷	W3110S.gb	4593147	4593150	4	2 [0]	[0] 7	yjiA	predicted GTPase
*	*	÷	W3110S.gb	4597552	4597556	5	7 [0]	[1] 10	tsr	methyl‑accepting chemotaxis protein I, serine sensor receptor
*	*	÷	W3110S.gb	4597703	4597704	2	10 [0]	[0] 4	tsr	methyl‑accepting chemotaxis protein I, serine sensor receptor
*	*	÷	W3110S.gb	4597858	4597887	30	3 [1]	[0] 9	tsr	methyl‑accepting chemotaxis protein I, serine sensor receptor
*	*	÷	W3110S.gb	4605425	4605437	13	2 [0]	[1] 2	dnaC	DNA biosynthesis protein
*	*	÷	W3110S.gb	4616527	4616535	9	2 [0]	[0] 10	osmY	periplasmic protein
*	*	÷	W3110S.gb	4617519	4617547	29	8 [0]	[1] 10	yjjU	predicted esterase
*	*	÷	W3110S.gb	4626748	4626774	27	3 [1]	[0] 3	yjjJ	predicted DNA‑binding transcriptional regulator
*	*	÷	W3110S.gb	4627892	4627904	13	6 [1]	[0] 13	lplA	lipoate‑protein ligase A
*	*	÷	W3110S.gb	4637885	4637885	1	5 [0]	[0] 2	trpR/yjjX	DNA‑binding transcriptional repressor, tryptophan‑binding/thiamin metabolism associated protein
*	*	÷	W3110S.gb	4644526	4644536	11	5 [0]	[0] 2	arcA	DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	314453 =	7 (0.300)	23 (1.050) +TCA	7/106	NT	87.4%	coding (873/888 nt)	eaeH	attaching and effacing protein, pathogenesis factor
	?	W3110S.gb	= 3920281	0 (0.000)					coding (88/213 nt)	cspA	major cold shock protein
*	?	W3110S.gb	314453 =	7 (0.300)	30 (1.340) +TC	7/108	NT	89.9%	coding (873/888 nt)	eaeH	attaching and effacing protein, pathogenesis factor
	?	W3110S.gb	3932930 =	0 (0.000)					coding (219/1608 nt)	dppA	dipeptide transporter
*	?	W3110S.gb	= 315707	NA (NA)	19 (0.820)	6/112	NT	100%	coding (654/687 nt)	ykgA	predicted DNA‑binding transcriptional regulator
	?	W3110S.gb	576911 =	0 (0.000)					coding (76/498 nt)	ybcS	predicted lysozyme
*	?	W3110S.gb	566000 =	NA (NA)	19 (0.820)	4/112	NT	100%	intergenic (+90/‑56)	ybcD/insE	DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE
	?	W3110S.gb	= 576913	0 (0.000)					coding (78/498 nt)	ybcS	predicted lysozyme
*	?	W3110S.gb	= 713954	14 (0.600)	18 (0.770)	6/112	NT	41.9%	coding (546/546 nt)	seqA	regulatory protein for replication initiation
	?	W3110S.gb	2809398 =	36 (1.550)					intergenic (+63/‑28)	ygaH/mprA	predicted inner membrane protein/DNA‑binding transcriptional regulator
*	?	W3110S.gb	1209367 =	16 (0.690)	30 (1.810)	5/80	NT	76.5%	coding (290/630 nt)	ycfK	hypothetical protein
	?	W3110S.gb	1211196 =	7 (0.420)					pseudogene (37/537 nt)	stfE	ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment
*	?	W3110S.gb	2018571 =	0 (0.000)	24 (1.090)	8/106	NT	100%	coding (567/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	2519723 =	NA (NA)					intergenic (+33/‑54)	nupC/insL	nucleoside (except guanosine) transporter/predicted transposase
*	?	W3110S.gb	= 2173564	NA (NA)	17 (0.740)	6/110	NT	100%	pseudogene (307/2041 nt) pseudogene (307/339 nt)	gatR gatR	DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
	?	W3110S.gb	3920278 =	0 (0.000)					coding (91/213 nt)	cspA	major cold shock protein
*	?	W3110S.gb	= 2173565	NA (NA)	58 (2.500)	13/112	NT	100%	pseudogene (306/2041 nt) pseudogene (306/339 nt)	gatR gatR	DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
	?	W3110S.gb	= 3932933	0 (0.000)					coding (222/1608 nt)	dppA	dipeptide transporter
*	?	W3110S.gb	= 2412225	NA (NA)	35 (1.510)	8/112	NT	100%	intergenic (‑55/‑782)	insA/yfbQ	IS1 element protein/predicted aminotransferase
	?	W3110S.gb	= 3748807	0 (0.000)					coding (176/984 nt)	tnaB	tryptophan transporter of low affinity
*	?	W3110S.gb	3748799 =	1 (0.040)	42 (1.810)	8/112	NT	97.7%	coding (184/984 nt)	tnaB	tryptophan transporter of low affinity
	?	W3110S.gb	4056222 =	NA (NA)					intergenic (‑564/+15)	yrhB/insB	hypothetical protein/IS1 transposase InsAB'