| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,754,612 | T→G | 26.4% | K85N (AAA→AAC) | U712_19355 ← | Putative ribosomal RNA large subunit methyltransferase YwbD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,754,612 | 0 | T | G | 26.4% | 83.9 / 8.0 | 54 | K85N (AAA→AAC) | U712_19355 | Putative ribosomal RNA large subunit methyltransferase YwbD |
| Reads supporting (aligned to +/- strand): ref base T (12/27); new base G (12/2); total (25/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.20e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCTGTACCATTGAATCAGCAGGTAGCCGTCATAATAGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGCCGTAATAGCCCCGCGCGAGAAACTCGCCGCCGCTCTCAGACACGATATC > CP006881/3754476‑3754749 | tGCTGTACCATTGAATCAGCAGGTAGCCGTCATAATAGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCTTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCttt > 5:370582/1‑139 (MQ=255) gCTGTACCATTGAATCAGCAGGTAGCCGTCATAATAGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCttt < 5:336246/138‑1 (MQ=255) ccATTGAATCAGCAGGTAGCCGTCATAATAGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTT‑TTTAt > 2:313264/1‑139 (MQ=255) gCCGTCATATTAGTCGATGGTGACGCCGCCGACACCGTCACCCTGACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCGTGGGCCGCTTTTG‑TTAATTTGGTGA‑GAAAAAATGCt < 1:33225/139‑1 (MQ=255) gCCGTCATAATAGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCt < 3:116621/139‑1 (MQ=255) agcGTCATAATAGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTAGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCt < 3:241827/137‑1 (MQ=255) tcctaataGTCGCTGGTGACGCCGCCGACACCGGCCCCCTCACCGTTGAACCGGCGGACAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCGGGGGCCGCGTTTG‑TTAATTTGCTGA‑GAAAACATGCTTGGt < 8:238279/136‑1 (MQ=255) tCATAATAGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTCTAACTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTG‑GTTATTTTCTGA‑GAAAAAATTCTTggg > 7:57211/1‑138 (MQ=255) ataataGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCa < 1:51329/139‑1 (MQ=255) ataGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAAt < 4:210954/138‑1 (MQ=255) ataGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATc < 8:335706/139‑1 (MQ=255) tCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGtt < 7:276577/139‑1 (MQ=255) tCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGtt < 3:192709/139‑1 (MQ=255) tCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTG‑TTTATTTTGTGG‑TAAAAAATGCTTGGGGAATATGtt > 4:345984/1‑139 (MQ=255) tCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTGGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGtt < 3:283028/139‑1 (MQ=255) tCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTAGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTT‑TTTATTTTCTGA‑GAAAAAATGCTTTGTCAATCTgct > 4:241827/1‑137 (MQ=255) gATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTT‑TTTAATTGGTGA‑CAAAAAATTATTGGTGAATCTGttga > 6:124155/1‑137 (MQ=255) tGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTGATGttt > 5:104631/1‑139 (MQ=255) gACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTa < 4:314669/139‑1 (MQ=255) cgccgcCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTAtt < 6:299672/139‑1 (MQ=255) cgccgAGACCGTCACCCTCACCGTTGAACAGGCGGATAGCTGTTGTATCTTGAGCCTCAAATAGTTTTGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCg < 6:181728/139‑1 (MQ=255) gccgACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTG‑TTTATTTGCTGA‑GAAAAAATGCTTGGTGCATCTGTTGATGTTTTTTGCgg > 3:283124/1‑139 (MQ=255) gACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTa < 2:314483/139‑1 (MQ=255) gACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTa < 5:57703/139‑1 (MQ=255) gTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTG‑TTTATTTTATGAGGAAAAAAAGATTGTTCAA‑CAGTTCATATATTTTGAGGGTAAgggaa > 4:268671/1‑135 (MQ=255) aCCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTAtt > 8:272682/1‑117 (MQ=255) aCCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTAtt < 7:272682/117‑1 (MQ=255) aCCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCaa < 4:353325/137‑1 (MQ=255) aCCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTG‑TTTATTTGGTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTTTTGCGGGTAAGCGTCCAGCCCAcc > 1:58913/1‑139 (MQ=255) ccGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAAccc < 2:42493/139‑1 (MQ=255) gTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCt < 2:349866/139‑1 (MQ=255) gAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTTCTGT‑GAAAAAATGCTTGGTCAATATGTTAATGTTTATTTCGGGTAAGCGTCCAGCCACCCCCGTTg > 8:217979/1‑139 (MQ=255) gAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCCTTTT‑TGAATTTGATGA‑GAAAAAAAGCATCGTGAAAATGTTAATGTTAATTTCGGGTAAGTGTACAGCCAACCACTTTg > 8:72863/1‑139 (MQ=255) ggCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTg < 7:217979/139‑1 (MQ=255) gCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGGTTG‑TTTATTTGGTGA‑GAAAAAATTGGTGGGGAATCTGTTGATGTTTATTTCGGGTTAGCGGCCCGCCACCCCCGTTGgttttc > 4:12777/1‑137 (MQ=255) cGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCGTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCa < 1:281132/139‑1 (MQ=255) cGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCa < 2:202443/139‑1 (MQ=255) aaaGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGc < 2:1682/139‑1 (MQ=255) aaaGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGc < 6:363732/139‑1 (MQ=255) aaaGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGCGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGc < 1:255148/139‑1 (MQ=255) gttgtATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTTATTTTCTGA‑GAAAAAATGCTTGGTGAATCTGTTGATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGGAGGGCGTaa > 3:38356/1‑138 (MQ=255) gttgtATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTTATTTGGTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTTCGGGTAAGCGTCCAGCCAACCCCATGGTTTTGCAGGCCGTaa > 6:182660/1‑138 (MQ=255) tCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTTAATTGCTGA‑GAAAAAATGCTTTGTGAATCTGTTCATGTTTATTTCGGGTAAGCGTCCAGCCAACCCCGTTGTTTTTCAGGCCGTAATAGcccc > 3:330445/1‑139 (MQ=255) aGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTTATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTTCGGGTTAGCGTCCAGCCAACCCCGTTGTTTTGCAGGCCTTAATAGCCCcgcgcg > 7:226718/1‑139 (MQ=255) aGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCa < 2:37669/119‑1 (MQ=255) aGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGCCGTAATAGCCCcgcgcg > 3:81297/1‑139 (MQ=255) aGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGGCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCa > 1:37669/1‑119 (MQ=255) aGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTGTTTATTTTGGGTG‑GAAAAAATG‑GTGGGGAATCTGTTGATGTTTTTTTAGGGTTAGCGGGCAGCCAAACCCGTTGTTTTTGAGGCCGTGATTGCCCcccgcc > 7:326451/1‑138 (MQ=255) aGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGTTTG‑TTTATTTTCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTTCGGGGAAGCGTCCAGCCAACCCCGTTGTTTTTCAGGCCGTAATATCCCcccgcg > 5:225443/1‑139 (MQ=255) aGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCGGTTT‑TTTATTTTTTGA‑GAAAAAAATGGTGGTGGATAAGTTGATTTTTTTTTGGGGTAAGCGGCCAGGCCACCCCATTTTTTTGGAGGCCCTAAAAGCCCcccgcg > 2:182572/1‑139 (MQ=255) cAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTGAATCTTTTCATTTTTATTTCGGGTAAGCGTCCAGCCCACCCCGTTGATTTTCAGGCCGTAAAAGCCCCCCCCGAGaa > 8:104918/1‑138 (MQ=255) ggCGCGCGCGTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGCCGTAATAGCCCCGCGCGAGAAACTcgccgccg < 2:197723/139‑1 (MQ=255) cgcTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGCCGTAATAGCCCCGCGCGAGAAACTCGCCGCCGctct > 7:303311/1‑137 (MQ=255) gggCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGCCGTAATAGCCCCGCGCGAGAAACTCGCCGCCGCTCTCAGaca < 3:177653/138‑1 (MQ=255) gggCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGCCGTAATAGCCCCGCGCGAGAAACTCGCCGCCGCTCTCAGaca < 8:303311/138‑1 (MQ=255) cTTTTG‑TTAATTTGGTGA‑GTATAAATGCGTGGTCAATATGTTCAGGTTTATTGGGGGTTAGCGTGCAGCCCCCCCCGTTGTTTTGGAGGCCGTAATAGCCCCGCGCGCGGGCCTCGGCGCCGCTGTCAGCCACgcgatc > 6:115860/1‑134 (MQ=255) | TGCTGTACCATTGAATCAGCAGGTAGCCGTCATAATAGTCGATGGTGACGCCGCCGACACCGTCACCCTCACCGTTGAACAGGCGGAAAGCTGTTGTATCTTGAGCCTCAAATAGTTTGGCGCGCGCTTGGGCCGCTTTTG‑TTAATTTGCTGA‑GAAAAAATGCTTGGTCAATCTGTTCATGTTTATTGCGGGTAAGCGTCCAGCCAACCCCTTTGTTTTGCAGGCCGTAATAGCCCCGCGCGAGAAACTCGCCGCCGCTCTCAGACACGATATC > CP006881/3754476‑3754749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |