Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 1,396,533 C→T 5.2% I99I (ATC→ATT)  U712_07145 → HTH‑type transcriptional regulator mhqR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,396,5330CT 5.2% 311.6 / 2.7 95I99I (ATC→ATT) U712_07145HTH‑type transcriptional regulator mhqR
Reads supporting (aligned to +/- strand):  ref base C (41/47);  new base T (2/3);  total (43/52)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TAGGAGATAAAATTCTCTTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACGCAAAACAGTTTCATAATA  >  CP006881/1396397‑1396669
                                                                                                                                        |                                                                                                                                        
tAGGAGATAAAATTCTCTTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCg                                                                                                                                         <  3:34509/138‑1 (MQ=255)
 aGGAGATAAAATTCTCTTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGt                                                                                                                                       >  4:35770/1‑139 (MQ=255)
 aGGAGATAAAATTCTCTTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGt                                                                                                                                       >  2:209765/1‑139 (MQ=255)
 aGGAGATAAAAATCTCTACGCAAGCTGGAGCAACACATACGTTGAAGATAAGCTGTAGCAAAAACAACTTCTCAATCGGAAACCGTCTCCTACAGACACACGAGTCACATTAGCGAAAATTACTGAAAAAGGCATCGGt                                                                                                                                       >  4:276252/1‑139 (MQ=255)
      aTAAAATTCTCTTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCtttt                                                                                                                                  >  1:250218/1‑139 (MQ=255)
      aTAAAATTCTCTTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCtttt                                                                                                                                  <  3:227374/139‑1 (MQ=255)
          aaTTCTCTTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAAc                                                                                                                              <  7:207981/139‑1 (MQ=255)
                ctTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATTGGTCTTTTGAACGATAtt                                                                                                                        >  1:127255/1‑139 (MQ=255)
                ctTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTAGCTCAAATTACTGAAAAAGGCATTGGTCTTTTGAACGatat                                                                                                                         >  1:121845/1‑138 (MQ=255)
                 ttGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGata                                                                                                                          <  3:87496/136‑1 (MQ=255)
                   ggCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATAtt                                                                                                                        <  8:209451/136‑1 (MQ=255)
                             aGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACg                                                                                                           >  3:209215/1‑139 (MQ=255)
                             aGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACg                                                                                                           >  7:105710/1‑139 (MQ=255)
                                   acaTACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACgctgct                                                                                                      <  2:310178/138‑1 (MQ=255)
                                      tACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGaaa                                                                                                  >  8:214896/1‑139 (MQ=255)
                                       aCGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAAt                                                                                                 >  5:319213/1‑139 (MQ=255)
                                         gTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATtg                                                                                               <  8:95504/139‑1 (MQ=255)
                                          ttGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGATGAAATtga                                                                                              >  8:251220/1‑139 (MQ=255)
                                           tGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGa                                                                                                    >  1:267278/1‑132 (MQ=255)
                                           tGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGa                                                                                                    <  2:267278/132‑1 (MQ=255)
                                           tGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATtgat                                                                                             >  6:330010/1‑139 (MQ=255)
                                            gTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATtgat                                                                                             >  3:299174/1‑138 (MQ=255)
                                             tAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGACCGATATTTTCCCTGATCACGCTGCTGAAATtgatg                                                                                            >  2:264728/1‑138 (MQ=255)
                                             tAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATtgatg                                                                                            >  6:267377/1‑138 (MQ=255)
                                             tAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATtgatg                                                                                            >  1:269388/1‑138 (MQ=255)
                                             tAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATtgatg                                                                                            <  4:241611/138‑1 (MQ=255)
                                               gATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCTCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGaaa                                                                                         >  1:157964/1‑139 (MQ=255)
                                                  aaGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGa                                                                                      >  5:161208/1‑139 (MQ=255)
                                                   aGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGa                                                                                      >  4:259758/1‑138 (MQ=255)
                                                   aGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGAt                                                                                     >  3:272221/1‑139 (MQ=255)
                                                    gCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGAt                                                                                     >  7:256206/1‑138 (MQ=255)
                                                    gCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGAt                                                                                     >  3:155713/1‑138 (MQ=255)
                                                    gCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATc                                                                                    <  2:269388/139‑1 (MQ=255)
                                                    gCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATc                                                                                    <  6:145283/139‑1 (MQ=255)
                                                    ccTGGAGAAAATAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATc                                                                                    <  1:339470/138‑1 (MQ=255)
                                                     cTGGCGCAAAAACACCTTCTCCTTCGGACAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAACATACTGAAAAAGGCATCGGTCTTTTGACCGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCa                                                                                   <  6:213640/139‑1 (MQ=255)
                                                     cTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGAt                                                                                     >  2:80906/1‑137 (MQ=255)
                                                     cTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCa                                                                                   <  4:299174/139‑1 (MQ=255)
                                                       ggAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGc                                                                                 >  2:65166/1‑139 (MQ=255)
                                                       ggAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGc                                                                                 >  1:148621/1‑139 (MQ=255)
                                                       ggAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGAATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGc                                                                                 >  6:3125/1‑139 (MQ=255)
                                                         aGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCg                                                                                >  8:150667/1‑138 (MQ=255)
                                                            ataaaGAACTTCTCATACGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTTCGCAAATTTCTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATGACGCTGCTGAAATTGATGAAATGATCAGCGTAtt                                                                            <  8:94200/137‑1 (MQ=255)
                                                            aaaaaGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCTCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTAtt                                                                            <  2:157964/139‑1 (MQ=255)
                                                            aaaaaGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAACGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTAtt                                                                            <  2:46445/139‑1 (MQ=255)
                                                                     ttCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACCTTTGCTCTAATTACTGAAAAAGGGATTGGTCTTTTGAAAGATTTTTTCCATGTTCACGCTGGTGAAATTGATGATATGATCAGCTTATTAAGCgaaga                                                                   <  4:70078/139‑1 (MQ=255)
                                                                     ttCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTTCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   <  2:250218/139‑1 (MQ=255)
                                                                     ttCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   <  3:259758/139‑1 (MQ=255)
                                                                       ctcATTCGGAACGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   <  2:340596/137‑1 (MQ=255)
                                                                       ctcATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   <  7:251220/137‑1 (MQ=255)
                                                                       ctcATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   <  1:65166/137‑1 (MQ=255)
                                                                       ctcATTCGGAAAGAGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAATATGGCATGGGTCTTTTGAAGGATATTTTCCATGATCACGCTTCTGTATTTGATGATATGATAAGCGTATTAAGCtaaga                                                                   <  3:276252/137‑1 (MQ=255)
                                                                          cttCGGACAGAGGCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCAGTGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGaagaag                                                                 <  2:127255/135‑1 (MQ=255)
                                                                          aTTCGGCATGCGTCTCCTTCAGAGAGACGAGTGACATTTGCGCATATATCTGTAATAGGGATTGGTCTTTTGTACGATATTTTCCCTGTTCACGCTGCTGTAATTGATGAATTGTTGTGCGTATTAAGCGaagtag                                                                 <  2:121845/136‑1 (MQ=255)
                                                                          aTTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAAc                                                                                                                              >  2:171340/1‑75 (MQ=255)
                                                                          aTTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAAc                                                                                                                              <  1:171340/75‑1 (MQ=255)
                                                                          aTTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGaagaag                                                                 <  6:356671/136‑1 (MQ=255)
                                                                          aTTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGaagaag                                                                 <  8:52261/136‑1 (MQ=255)
                                                                               gAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   >  6:208263/1‑129 (MQ=255)
                                                                               gAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   <  5:208263/129‑1 (MQ=255)
                                                                                    cGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGAtgtg                                                    >  4:52133/1‑139 (MQ=255)
                                                                                      tctcCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCa                                                  >  6:19319/1‑139 (MQ=255)
                                                                                      tctcCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCa                                                  >  6:232840/1‑139 (MQ=255)
                                                                                          cTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCg                                               <  7:214896/138‑1 (MQ=255)
                                                                                             cagacagaCGAGTGACATTTGCGCAAATTACTGAAAAAGGTATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGaa                                             <  5:3125/137‑1 (MQ=255)
                                                                                             cagacagaCGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCTCGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGaa                                             <  1:80906/137‑1 (MQ=255)
                                                                                             cagacagaCGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGaa                                             <  5:267377/137‑1 (MQ=255)
                                                                                             cagacagaCGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGaa                                             <  5:330010/137‑1 (MQ=255)
                                                                                             cagacagaCGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGaa                                             <  7:150667/137‑1 (MQ=255)
                                                                                             cagacagaCGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGaa                                             <  3:35770/137‑1 (MQ=255)
                                                                                             cagacagaCGAGTGACATTTGAGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGaa                                             <  2:369911/137‑1 (MQ=255)
                                                                                                   gacGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTaaa                                     <  3:245509/139‑1 (MQ=255)
                                                                                                   gacGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTaaa                                     <  2:148621/139‑1 (MQ=255)
                                                                                                   gacGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTaaa                                     <  5:232840/139‑1 (MQ=255)
                                                                                                    acGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATtg                                                                                               >  2:40771/1‑80 (MQ=255)
                                                                                                    acGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATtg                                                                                               <  1:40771/80‑1 (MQ=255)
                                                                                                    acGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   <  4:320997/108‑1 (MQ=255)
                                                                                                    acGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCgaaga                                                                   >  3:320997/1‑108 (MQ=255)
                                                                                                    acGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTaaa                                     >  8:103949/1‑138 (MQ=255)
                                                                                                    acGAGTGACATTTGCGCAAATTACTGAAAAAGGAATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCTAAATGTTaaa                                     >  8:186710/1‑138 (MQ=255)
                                                                                                    acGAGTGACATATGCGAAAATTACTGAAAAAGGCATCGGTCTTTAGAACGATATTTTCCCTGATCACGATGATGAAATTGATCAAATGATCAGCGTATTATGAGAAGAAGAGGTAGAGATGTCCACCGAAATCTTaaa                                     >  2:325090/1‑138 (MQ=255)
                                                                                                          gACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAagag                                >  5:180612/1‑137 (MQ=255)
                                                                                                           aCATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGaa                                                                                                                               <  1:270501/41‑1 (MQ=255)
                                                                                                           aCATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGaa                                                                                                                               >  2:270501/1‑41 (MQ=255)
                                                                                                           aCATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTa                              <  6:319213/138‑1 (MQ=255)
                                                                                                                tGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGAtt                         <  1:187434/138‑1 (MQ=255)
                                                                                                                  cgcAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTAtt                                                                            >  7:357272/1‑85 (MQ=255)
                                                                                                                  cgcAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTAtt                                                                            <  8:357272/85‑1 (MQ=255)
                                                                                                                     aaaTTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACg                    <  5:19319/138‑1 (MQ=255)
                                                                                                                       aTTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACGCa                  >  1:11653/1‑138 (MQ=255)
                                                                                                                          aCTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACGCaaaa               <  8:105710/138‑1 (MQ=255)
                                                                                                                          aCTGAAAAAGGCATAGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACGCaaaa               <  4:209215/138‑1 (MQ=255)
                                                                                                                           cTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACGCAAAAc              <  4:272221/138‑1 (MQ=255)
                                                                                                                            tGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACGCAAAACAg            >  2:14880/1‑139 (MQ=255)
                                                                                                                                      aTCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACGCAAAACAGTTTCataata  <  2:35979/139‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
TAGGAGATAAAATTCTCTTGGCTAGCGGGAGCATCACATACGTTGTAGATAAGCTGGAGCAAAAAGAACTTCTCATTCGGAAAGCGTCTCCTACAGACAGACGAGTGACATTTGCGCAAATTACTGAAAAAGGCATCGGTCTTTTGAACGATATTTTCCCTGATCACGCTGCTGAAATTGATGAAATGATCAGCGTATTAAGCGAAGAAGAGGTAGAGATGTGCACCGAAATGTTAAAAAGAGTAGGATTAAACGCAAAACAGTTTCATAATA  >  CP006881/1396397‑1396669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑