| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,474,968 | G→T | 39.3% | S88* (TCA→TAA) | U712_07575 ← | Uncharacterized protein ykoA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,474,968 | 0 | G | T | 39.3% | 28.0 / 11.0 | 37 | S88* (TCA→TAA) | U712_07575 | Uncharacterized protein ykoA |
| Reads supporting (aligned to +/- strand): ref base G (6/16); new base T (10/5); total (16/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.33e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGAAACGGGCTGGGACTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCACACTGAAGAAAAGGTGAACCTGTTTGTTCTCTTTTCCGCGCTTTTCTAATAGCCGTTTAGAAAAAATGTGCGAAA > CP006881/1474834‑1475106 | ccGAAACGGGCTGGGACTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGCCAGCAGGCG‑TGTTTATTTTGaaa > 1:16270/1‑138 (MQ=255)ccGAAACGGGCTGGGACTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TGTTTTTTTTGaaa > 5:110046/1‑138 (MQ=255) aaaCGGGCTGGGACTGATCGCGGAAGATCGAATTGTAGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAAATCGTCAAACAAAAAAAAAACCCCTTTCTTGCCTAGGACAGCAGGCGTTTTTTATTTTTaaaaa > 6:30438/1‑138 (MQ=255) aCGGGCTGGGACTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCACGCG‑TGTTTATTTTTaaaaataca > 4:172317/1‑135 (MQ=255) ggCTGGGACTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATTCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTTAAAAATAAGcca > 2:25879/1‑137 (MQ=255) ccTGGTACTGATCGCGGAAGAGCGAATTGTCGCCACATCGATTTTTGTCTTTTTCCCGT‑TAAACCAAATGCGACAAACAAAAAAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGAc < 5:301232/138‑1 (MQ=255) cTGGGACTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAACCGAc > 4:367515/1‑138 (MQ=255) cTGGGACTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCCT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTTTTTTTTAAAAAAAGCGccc > 8:191579/1‑139 (MQ=255) gACTGACCCCGCAAGATCTAATTGCCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TAAACGAAATGCGTCAAACAAAAAAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACcaatg < 7:244886/139‑1 (MQ=255) cTGATCGCGTAATATCTAATTGTCGGCACATCTAATTTTGTATTTTACCCTT‑TAAACTAAATGCGAAAAAAAAAAAAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACcaatgca < 1:292307/139‑1 (MQ=255) cTGATCGCGTAAGATCGAATTGTCGGCACATCTAATTTTGTCTTTTTCCCTT‑TTAACTAAATGCGTCAAAAAAAAAAAAAACGCATTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACcaatgca < 2:136378/139‑1 (MQ=255) cTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTACCCGT‑TTAACTAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACcaatgca < 7:11957/139‑1 (MQ=255) aTCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTTTTTTGTAAAAGAAGCGCCcaaaggaatt > 8:312473/1‑138 (MQ=255) aTCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TGTTTTTTTTTAAAAATAAGCGACcaaagcaatg > 2:292307/1‑139 (MQ=255) aTCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAAAGCGTCAAACAAAAAAAAAACGCCTTGCTGGCCTAGGACATCAGGCG‑GTGTTTTTTTGAAAAAGAAGCGACcaaaacaat > 2:67307/1‑138 (MQ=255) aaGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATaaaa < 8:282802/139‑1 (MQ=255) gATCTAATTGTCGTCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGCCAAACAAAATAAAAACGCCTTGCTGGCATAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAAcc < 3:361107/139‑1 (MQ=255) gATCCATTTGTCGCCACATCTATTTTTGTTTTTATCCGCT‑TTAACAACATCGCTCAAAAAAAAAAAACACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTTAAAAAGAAGCGACCAATGCAATGCATAAAAcc < 5:320312/139‑1 (MQ=255) aTCGAATTGTCAGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TGTTTTTTTTGAAAAAAAACCGCCCAAAGCAAAGCCAAAAACCg > 5:280877/1‑139 (MQ=255) aaTTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTTTAAAAACATCGACCAATTCAATTCAAAAAAcccgtgt > 8:254620/1‑134 (MQ=255) attgggggCACTTCCAATTTTGTCTTTTCACCTT‑TTAAAAAACTCGCAAAAACAAAATAAAACCGCCTTGCTGGCCTTGGACAGCAGGCG‑TTTTTTTTTTTAAAAAGAAGCGACCAATGCAATGCATAAAACCGtgat < 7:190155/132‑1 (MQ=255) aTTGTCGGCACATCTAAGTTGGTCTTTTTCCCGT‑TAAACGAAATGCTCCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAACCGtgat < 1:213456/138‑1 (MQ=255) caTCGAAGTTTGTCTTTTTCCCTT‑TTAACTAAATGCGTAAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCT‑TTTTTATTTTTAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAAc < 1:25879/139‑1 (MQ=255) actctaaGTTTGTCTTTTTCCCGT‑TAAACGAAAGGCGTCAAAAAAAAAAAACACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAAc < 7:243676/134‑1 (MQ=255) cctgtggTCTTTATCCCGT‑TTAACCAAAGGCGACAAACAAAAAAAAACCGCCTGGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAACGAAGCGACCACTGCAATGCATAAAACCGTGATGAACACTGAACCGata < 6:293591/133‑1 (MQ=255) aaGTTTGGATTTTTCCCGT‑TAAACGAAATGCGACAAACAAAAAAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGata < 6:110046/139‑1 (MQ=255) attttCCCGTATAAACCAACTGCGACAAACAAAAAAAAACCGCCTGGCTGGCCTAGGCCAGCTGGCG‑TTTTTATTTTGAAAAAGACGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAg < 2:113387/138‑1 (MQ=255) cccTT‑TTAACAAATTGCCTAAAAAAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGAG‑TTTTTATTTTTAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCacac < 5:235360/138‑1 (MQ=255) ccagT‑TTAACTAAATGCGTAAAAAAAAATAAAAACTCCTTGCTGGCCTAGGAAAGCTGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCacac < 6:279444/135‑1 (MQ=255) aaTAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTAATTTTAAAAACAACCCACCCATTAAAAGCATAAAAACGTGAAGAAAACTGAAACCCTAAAAAACAGCCCACAGAAGAAAATGTGAACCTGTTTGTtca > 2:223265/1‑138 (MQ=255) cGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCACACTGAAGAAAAGGTGAACCTGTTTGTTCTCTTTTCcg < 8:196510/139‑1 (MQ=255) gCTGGCCAAGCACAGCAGGTG‑TTTTTATTTTTAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCACACTGAAGAAAAGGTGAACCTGTTTGTTCTCTTTTCCGCGCtt < 5:30438/138‑1 (MQ=255) ggACAGCAGGCG‑TGTTTATTTTTAAAAATAAGCGACCAAAGCAATGCATAAAAACGTGATGAAAACTGCACCGATAATAGCCAGCACACAGAAGAAAAGGTGAACCTGTTTGTTCTCTTTTACGCGCATTTCTAATatc > 2:57764/1‑137 (MQ=255) agcagGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCACACTGAAGAAAAGGTGAACCTGTTTGTTCTCTTTTCCGCGCTTTTCTAATAGCCGtt < 7:278138/139‑1 (MQ=255) cagGCG‑TGTTTATTTTTAAAAAGAATCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCACACTGCAGAAAAGGTGAACCGGTTTGTTCTCTTTTGCGCGCTTTTCTAATATCCGTTTa > 4:274029/1‑139 (MQ=255) g‑TTTTTATTTTTAAAAACAAGCGCCCAAAGCAATGCATAAAAACGTGATGAACACGGAAACGATAATATCCAGCACACTGAAGAAAAGGTGTACCTGTTTGTTCTCTTTTAACCGCGTTTGTAATAGGCGTTTAGaaa > 3:348698/1‑138 (MQ=255) tGAAAAAGAAGCGACCAAAGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCACACTGAAGAAAAGGTGAACCTGTTTGTTCTCTTTTC‑‑CGCTTTTCTAATAGCCGTTTAGAAAAAATGTGCGaaa < 7:254620/138‑1 (MQ=255) gAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCACACTGAAGAAAAGGTGAACCTGTTTGTTCTCTTTTCCGCGCTTTTCTAATAGCCGTTTAGAAAAAATGTGCGaa < 5:26902/138‑1 (MQ=255) | CCGAAACGGGCTGGGACTGATCGCGGAAGATCGAATTGTCGGCACATCGAAGTTTGTCTTTTTCCCGT‑TTAACGAAATGCGTCAAACAAAATAAAAACGCCTTGCTGGCCTAGGACAGCAGGCG‑TTTTTATTTTGAAAAAGAAGCGACCAATGCAATGCATAAAACCGTGATGAACACTGAACCGATAATAGCCAGCACACTGAAGAAAAGGTGAACCTGTTTGTTCTCTTTTCCGCGCTTTTCTAATAGCCGTTTAGAAAAAATGTGCGAAA > CP006881/1474834‑1475106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |