| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,569,105 | C→A | 6.5% | I146I (ATC→ATA) | U712_08075 → | RNA polymerase sigma‑G factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,569,105 | 0 | C | A | 6.5% | 327.0 / 6.4 | 100 | I146I (ATC→ATA) | U712_08075 | RNA polymerase sigma‑G factor |
| Reads supporting (aligned to +/- strand): ref base C (43/50); new base A (3/4); total (46/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 102 total aligned reads displayed.
ATCCGCAGGTATTTACGTGATAATAACCCGATCCGTGTCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGTGATGAGCGT > CP006881/1568974‑1569243 | aTCCGCAGGTATTTACGTGATAATAACCCGATCCGTGTCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAg > 3:282952/1‑139 (MQ=255) ccGCAGGTATTTACGTGATAATAACCCGATCCGTGTCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGt > 2:190935/1‑138 (MQ=255) ataataACCCGATCCGTGTCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCAt > 6:230900/1‑137 (MQ=255) aataaCCCGATCCGTGTCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAg > 2:234212/1‑138 (MQ=255) ataaCCCTATCCGTGTCTCATGATCACTCCGGGACATCGCTTACAAGGCGCTTCTGGTAAGAGAGCGGTTAATCAGTGAGACAAGCACGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGa < 2:354072/139‑1 (MQ=255) aTCCGTGTCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATAGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTAt > 5:263873/1‑139 (MQ=255) cGTGTCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTg < 1:300091/139‑1 (MQ=255) tgtCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTgcg > 8:261456/1‑139 (MQ=255) tctcAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCt < 5:324198/139‑1 (MQ=255) cAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGCCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGa > 5:103440/1‑139 (MQ=255) cAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAATTTGTATTTGCGCTTGa < 4:292509/139‑1 (MQ=255) aaGCTCCCTCCCGGACATCGCATACAAGGCGCGTCAGGGCAGCGAGCGGAAAATCAGGCCGACACGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAAGTGTATTTGCGCTTGa < 2:338197/138‑1 (MQ=255) aCTCCGGGACATCGCTTACACGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCAtt < 2:207025/139‑1 (MQ=255) aCTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCAtt > 5:74348/1‑139 (MQ=255) tCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCAtt > 7:316790/1‑137 (MQ=255) ggACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATAGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGAt > 6:185433/1‑139 (MQ=255) cGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGtt > 8:315922/1‑139 (MQ=255) cGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGtt > 1:336370/1‑139 (MQ=255) cGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGtt > 4:98192/1‑139 (MQ=255) cGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGtt > 5:367980/1‑139 (MQ=255) cGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGtt > 2:265295/1‑139 (MQ=255) cGCTTACAAGGCGCTTCAGCTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCgcat > 4:221850/1‑136 (MQ=255) cTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTtc < 7:261456/139‑1 (MQ=255) cTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTtc < 8:316790/139‑1 (MQ=255) aCAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTtct < 5:324443/137‑1 (MQ=255) aaGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTAt < 1:130319/139‑1 (MQ=255) aGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTAtt > 5:232388/1‑139 (MQ=255) gcTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGaa < 4:282952/139‑1 (MQ=255) cTTCATGTAAGCGCGCTGTTAATCAGTGAGACAAGCAAGGATCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTAACGCATGAGGAAATTGTATTTGCGCTTGATGCAATTCAGGATCCGGTTTCTCTATTTGAAc < 7:66554/139‑1 (MQ=255) cTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCAtt < 2:18268/114‑1 (MQ=255) cTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCAtt > 1:18268/1‑114 (MQ=255) cTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAAc < 1:145136/139‑1 (MQ=255) cTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAAc > 6:122564/1‑139 (MQ=255) cTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATAGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAAc > 7:353045/1‑139 (MQ=255) cTTCAGGGAAGCCAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAAc < 2:349405/139‑1 (MQ=255) aGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGAt > 6:222887/1‑139 (MQ=255) aaGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGa < 4:87213/111‑1 (MQ=255) aaGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGa > 3:87213/1‑111 (MQ=255) agagagCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCtat > 5:161844/1‑138 (MQ=255) agCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTtc < 7:353132/115‑1 (MQ=255) agCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTtc > 8:353132/1‑115 (MQ=255) agCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAacga > 1:274962/1‑139 (MQ=255) cGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTtc > 8:120078/1‑113 (MQ=255) cGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTtc < 7:120078/113‑1 (MQ=255) cGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAacgacg > 1:80558/1‑139 (MQ=255) cGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAacgacg > 1:151619/1‑139 (MQ=255) cGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAacgacg > 3:30052/1‑139 (MQ=255) cGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTCAACCGATCTATAacgacg > 7:220190/1‑139 (MQ=255) ggTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGAcgg > 3:213005/1‑139 (MQ=255) tAATCAGTGAGACAAGCACGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGAcggcg < 5:73373/138‑1 (MQ=255) aaTCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAAcc < 8:279824/120‑1 (MQ=255) aaTCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAAcc > 7:279824/1‑120 (MQ=255) aTCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGgag > 4:17024/1‑139 (MQ=255) tccgggagaCAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTGTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGgaga < 2:336370/134‑1 (MQ=255) aGTGTGAAATGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTGTTGATGTACGGCTTGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGAc < 2:80558/138‑1 (MQ=255) gTGAGAAAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTGCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGAccc < 4:56731/139‑1 (MQ=255) tGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAAtt < 6:213889/67‑1 (MQ=255) tGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAAtt > 5:213889/1‑67 (MQ=255) tGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCAtt < 1:143643/88‑1 (MQ=255) tGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCAtt > 2:143643/1‑88 (MQ=255) tGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGAccc > 1:162812/1‑138 (MQ=255) tGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGAccc > 1:94114/1‑138 (MQ=255) agaCACGCATGGTCCCGACTGCAGAAGACATAGCAAAAGTTCTTGAAGTACAGCATGAGTAAATTGTATTTGCGCTGGATGCCATTCTGGATCCGGTTGCTATATTTGAACCGATCTATAACGACGGCGGAGACCCGAt < 2:232260/139‑1 (MQ=255) aCAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCt < 2:274962/139‑1 (MQ=255) aagcaagGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTAt > 6:199220/1‑139 (MQ=255) caagGAGCCGACTGCAGAAGACATCGCAAAAGATCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTAtgt > 8:26323/1‑138 (MQ=255) aagGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGa < 6:161844/139‑1 (MQ=255) aagGAGCCGACTGCAGAAGACATAGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGa < 5:185433/139‑1 (MQ=255) gAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATg > 2:266112/1‑138 (MQ=255) aGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGa > 6:137268/1‑139 (MQ=255) gCCGACTGCAGAAGAGATCGCAAATGTTCTTGAAGTTCCGCTTGAGTAATTTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACGGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGAc < 3:221850/139‑1 (MQ=255) ccGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGAt < 8:57850/125‑1 (MQ=255) ccGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGAt > 7:57850/1‑125 (MQ=255) cgccTGCAGACGACATCGCAAACGTTCTTCACCTACCGCAAGAGGAAATTGTATTTGCGCTTCATCCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCa < 4:213005/136‑1 (MQ=255) ctgctgAAGACATCGCAAAAGTTCTTGAATTACCGCATGAGGAAATTGTTTTTGCGCTTGATGCCATTCATGATCCGGTTTCTCTATTTGAACCTATCTATAACGACGGCGGAGACCCGATCTATGTGATGGAACAAAt < 8:220190/139‑1 (MQ=255) cTGAAGAAGACATCGCAAAAGTTCTTGACTTACCGCATGAGGAAATTGTATTTGCGCTTGCTGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAAt < 8:146044/139‑1 (MQ=255) agaagaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGaa > 3:343066/1‑88 (MQ=255) agaagaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGaa < 4:343066/88‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCTCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTATATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 5:230900/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGATGAAATTGTATTTGCGCTTGATGCAATTCAGGATCCGGTTTCTCTATTTGAACCTTTCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 5:288868/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGTAATTTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 3:101109/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 7:26323/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 7:315922/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 5:222887/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 6:367980/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 1:18458/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 1:190935/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 5:122564/139‑1 (MQ=255) agaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 5:199220/139‑1 (MQ=255) agaCATAGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgat < 8:353045/139‑1 (MQ=255) gaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgatg < 3:98192/139‑1 (MQ=255) gaCATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGtgatg < 1:234212/139‑1 (MQ=255) cATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGTGATGAg < 2:33244/139‑1 (MQ=255) cATAGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGTGATGAg < 6:263873/139‑1 (MQ=255) aTCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGAccc > 8:246526/1‑107 (MQ=255) aTCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGAccc < 7:246526/107‑1 (MQ=255) aTCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGTGATGAGc > 1:193768/1‑139 (MQ=255) aTCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGTGATGAGc > 2:61048/1‑139 (MQ=255) cGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGCTGCCATTCAGGATCCGGTTGCTCGATTTGCCCCGATCTAGAACGACGCCGGCGACCCGATCTTTGTGATGGACCAAAGCAGGGATGAGCGt > 8:180745/1‑139 (MQ=255) cGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGTGATGAGCg > 7:212622/1‑138 (MQ=255) | ATCCGCAGGTATTTACGTGATAATAACCCGATCCGTGTCTCAAGATCACTCCGGGACATCGCTTACAAGGCGCTTCAGGTAAGAGAGCGGTTAATCAGTGAGACAAGCAAGGAGCCGACTGCAGAAGACATCGCAAAAGTTCTTGAAGTACCGCATGAGGAAATTGTATTTGCGCTTGATGCCATTCAGGATCCGGTTTCTCTATTTGAACCGATCTATAACGACGGCGGAGACCCGATCTATGTGATGGACCAAATCAGTGATGAGCGT > CP006881/1568974‑1569243 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |