| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,661,585 | A→G | 10.7% | T90T (ACA→ACG) | U712_08545 → | putative flagellar hook‑length control protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,661,585 | 0 | A | G | 10.7% | 100.0 / 3.1 | 37 | T90T (ACA→ACG) | U712_08545 | putative flagellar hook‑length control protein |
| Reads supporting (aligned to +/- strand): ref base A (24/9); new base G (2/2); total (26/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGAAAGGGAACTCCTAATTCTGAAGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCAGAAGCTAAAACGGCTCTGAGT > CP006881/1661451‑1661723 | ggAAAGGGAACTCCTAATTCTGAAGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAGCATTAAGCAACCTGACAggg > 1:328411/1‑138 (MQ=255)ggAAAGGGAACTCCTAATTCTGAAGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAggg > 1:296121/1‑138 (MQ=255) cTCCTAATTCTGAAGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGa < 6:158262/139‑1 (MQ=255) cTAATTCTGAAGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGc > 4:51969/1‑139 (MQ=255) gAAGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATg < 6:36644/136‑1 (MQ=255) gAAGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATg > 5:36644/1‑136 (MQ=255) aaGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGc < 8:275668/136‑1 (MQ=255) cAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCaaa > 7:103352/1‑139 (MQ=255) aTGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCt > 5:281734/1‑139 (MQ=255) aTGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCt > 3:254304/1‑139 (MQ=255) aaTGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCaaa < 7:326098/139‑1 (MQ=255) aaTGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAg > 2:259834/1‑139 (MQ=255) aGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGa < 7:115715/139‑1 (MQ=255) aGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGa > 5:71771/1‑139 (MQ=255) gTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATg < 3:78762/81‑1 (MQ=255) gTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATg > 4:78762/1‑81 (MQ=255) gTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGAc > 5:48262/1‑139 (MQ=255) gTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGCAAGCAATTGGATGCGAATGCTCTGAAAATGTTCCAAAATCTTTAGCAAGCAGTTCAATCAAAAATGTCAGGCGGGAc > 1:54872/1‑139 (MQ=255) aaGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATc > 7:245930/1‑138 (MQ=255) aaGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATc > 7:53518/1‑138 (MQ=255) cAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGc > 1:318983/1‑139 (MQ=255) cAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGc > 1:164348/1‑139 (MQ=255) cAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTCACAGGGAAGCAATTGGATGCTAATGCTCTGCAAATGTTGCAAAATCTTTTCAAAGCAGTTTAATCAAAAATGTCAGGAGGGACGCATCAATTGc > 3:35032/1‑139 (MQ=255) gACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTca < 6:137517/139‑1 (MQ=255) acaaaATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGaa < 8:217522/139‑1 (MQ=255) acaaaATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGa > 7:217522/1‑138 (MQ=255) caaaATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGaaa < 3:344265/139‑1 (MQ=255) tGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACg > 1:299755/1‑136 (MQ=255) acagaCATTAAGCAAACTGACGGGGAAGCAATTGGATGCGAATGCTCTGCAAATTTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCa < 3:311255/135‑1 (MQ=255) aCTGACGGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCATTTGAATCAAAAATGTCAGGAGGGACTGATCAATTGCTCACTGAAACGGAGATAATCTTTTCAGAAGCTAAAAcctg > 4:311255/1‑135 (MQ=255) aCTGACGGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCa > 4:316671/1‑124 (MQ=255) aCTGACGGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCa < 3:316671/124‑1 (MQ=255) aCTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCAGAAGCTAAAACGGct > 8:320796/1‑139 (MQ=255) aCTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCAGAAGCTAAAACGGct > 7:334714/1‑139 (MQ=255) aCTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCAGAAGCTAAAACGGct > 7:148030/1‑139 (MQ=255) aCTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCAGAAGCTAAAACGGct > 1:330211/1‑139 (MQ=255) gACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCAGAAGCTAAAACGGctct > 1:31167/1‑138 (MQ=255) aGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCAGAAGCTAAAACGGCTCTGAGt > 5:12410/1‑139 (MQ=255) | GGAAAGGGAACTCCTAATTCTGAAGATCAGCTTTTAGCAGATGCGCTTAAAAAGATCGGTGAATGGCTAAATGCAAGTCCTGAAGATCAAGACAAACAAAATGCGGATCTTTTGCAAACATTAAGCAAACTGACAGGGAAGCAATTGGATGCGAATGCTCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTGAATCAAAAATGTCAGGCGGGACGGATCAATTGCTCACAGAAACGGAGAAAATCTTTTCAGAAGCTAAAACGGCTCTGAGT > CP006881/1661451‑1661723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |