| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,671,433 | G→C | 45.3% | D228H (GAT→CAT) | U712_08610 → | Flagellar biosynthesis protein flhA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,671,433 | 0 | G | C | 45.3% | 13.5 / 118.4 | 73 | D228H (GAT→CAT) | U712_08610 | Flagellar biosynthesis protein flhA |
| Reads supporting (aligned to +/- strand): ref base G (23/17); new base C (19/14); total (42/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.03e-01 | |||||||||||
TAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCG > CP006881/1671302‑1671571 | tAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAAt > 5:125112/1‑139 (MQ=255) ccGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCgg < 7:65515/138‑1 (MQ=255) ccGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCgg < 2:44372/138‑1 (MQ=255) cGGAATCATCATTTTGATGATCAATATTATTATCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAATTCCCGGCa < 6:46711/139‑1 (MQ=255) cGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCa < 1:329893/139‑1 (MQ=255) atcatcATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGt > 4:171913/1‑139 (MQ=255) catTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCa < 4:238125/120‑1 (MQ=255) catTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCa > 3:238125/1‑120 (MQ=255) catTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAAtt > 5:346465/1‑139 (MQ=255) tgatgaTCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctac > 7:57862/1‑139 (MQ=255) atgatCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacgg > 4:2145/1‑139 (MQ=255) atCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggcta > 6:220040/1‑139 (MQ=255) atCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGCGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGCGTGTAGGGGATGGATTTGTTTCGCAAATCCCGGCACTGTTAATTTctacggcta > 6:46714/1‑139 (MQ=255) tCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggctac < 2:325913/139‑1 (MQ=255) tattatTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACggg > 7:315124/1‑138 (MQ=255) tattatTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc < 7:22913/132‑1 (MQ=255) tattatTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc > 8:22913/1‑132 (MQ=255) attTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTAtt < 8:57862/138‑1 (MQ=255) ttCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTgg > 7:67398/1‑139 (MQ=255) ttCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTgg > 7:257023/1‑139 (MQ=255) ttCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTgg > 7:230265/1‑139 (MQ=255) ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGATTTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTca > 2:2778/1‑139 (MQ=255) ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTca > 5:301246/1‑139 (MQ=255) ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTca > 5:302685/1‑139 (MQ=255) ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCgg < 3:307409/103‑1 (MQ=255) ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTca > 1:66361/1‑139 (MQ=255) ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGATGACTGTAGGGCATGGAATTGTTTCGCAAATCCCgg > 4:307409/1‑103 (MQ=255) aaTCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGTTGCTGACTGTAGTGCATTGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTcaca < 1:189144/139‑1 (MQ=255) aaTCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTcaca < 8:96610/139‑1 (MQ=255) tGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGc < 3:171913/139‑1 (MQ=255) ggAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCAt < 3:2145/139‑1 (MQ=255) cagcagGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGa > 7:24783/1‑138 (MQ=255) cagGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACt > 1:62939/1‑139 (MQ=255) cagGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACt < 5:220040/139‑1 (MQ=255) cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACTAGAGCTGCATCTGAAGGAAACTTAggg < 6:318924/139‑1 (MQ=255) cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAggg < 5:311800/139‑1 (MQ=255) cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAggg < 6:125112/139‑1 (MQ=255) cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggcta > 4:250299/1‑95 (MQ=255) cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggcta < 3:250299/95‑1 (MQ=255) cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAggg > 2:343981/1‑139 (MQ=255) tGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCa < 8:24783/139‑1 (MQ=255) gcccATTCACGAAGCTGCTTCACACTTTCGGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCAt < 2:66361/137‑1 (MQ=255) ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCa > 8:82767/1‑68 (MQ=255) ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCa < 7:82767/68‑1 (MQ=255) ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACAt > 7:311063/1‑139 (MQ=255) ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCAt > 4:225962/1‑134 (MQ=255) ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCAt < 3:225962/134‑1 (MQ=255) aagcagCTGCGTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTATTTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTa < 8:316767/138‑1 (MQ=255) gctgctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGc > 4:99630/1‑138 (MQ=255) tgctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACt < 3:144484/116‑1 (MQ=255) tgctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACt > 4:144484/1‑116 (MQ=255) tgctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAg > 2:304943/1‑139 (MQ=255) tgctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAg > 4:115195/1‑139 (MQ=255) gctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAg > 3:125075/1‑109 (MQ=255) gctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAg < 4:125075/109‑1 (MQ=255) gctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGc > 3:205522/1‑139 (MQ=255) ctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAg < 2:62939/137‑1 (MQ=255) cTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCg < 8:67398/139‑1 (MQ=255) tACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc > 8:324541/1‑63 (MQ=255) tACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc < 7:324541/63‑1 (MQ=255) tACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTAt > 5:31938/1‑139 (MQ=255) gCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGa < 2:31972/108‑1 (MQ=255) gCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGa > 1:31972/1‑108 (MQ=255) cTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGCCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGc > 7:152378/1‑139 (MQ=255) tGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCt > 2:14640/1‑139 (MQ=255) tGACTGTAGGGCATGGAATTGTTTCTCAAATCACGGCACTGTTAATTTCTACGGCTACGGTTATTGTGGGCACAATAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCt > 4:110877/1‑139 (MQ=255) tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc > 6:236675/1‑55 (MQ=255) tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc < 5:236675/55‑1 (MQ=255) tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCaa < 7:291733/135‑1 (MQ=255) tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCaa > 8:291733/1‑135 (MQ=255) tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCt > 8:86329/1‑139 (MQ=255) aCTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCttt > 3:57036/1‑139 (MQ=255) aGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATAc > 5:181101/1‑139 (MQ=255) gggATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGt < 3:178843/139‑1 (MQ=255) gggATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGt > 6:375701/1‑139 (MQ=255) gATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCg > 6:318071/1‑139 (MQ=255) | TAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCG > CP006881/1671302‑1671571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |